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Results for “Journal of Morphology”

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At least 289 records · Page 16Linked to original sources

USGS2010

Spatial trends in tidal flat shape and associated environmental parameters in South San Francisco Bay

Spatial trends in the shape of profiles of South San Francisco Bay (SSFB) tidal flats are examined using bathymetric and lidar data collected in 2004 and 2005. Eigenfunction analysis reveals a dominant mode of morphologic variability related to the degree of convexity or concavity in the cross-shore profileindicative of (i) depositional, tidally dominant or (ii) erosional, wave impacted conditions. Two contrasting areas of characteristic shapenorth or south of a constriction in estuary width located near the Dumbarton Bridgeare recognized. This pattern of increasing or decreasing convexity in the inner or outer estuary is correlated to spatial variability in external and internal environmental parameters, and observational results are found to be largely consistent with theoretical expectations. Tidal flat convexity in SSFB is observed to increase (in decreasing order of significance) in response to increased deposition, increased tidal range, decreased fetch length, decreased sediment grain size, and decreased tidal flat width. ?? 2010 Coastal Education and Research Foundation.

Journal of Coastal Research↗

USGS1994

Assessing smoltification of juvenile spring Chinook salmon Oncorhynchus tshawytscha using changes in body morphology

A morphometric measure of smoltification of juvenile spring chinook salmon ( Oncorhynchus tshawytscha ) was developed and evaluated. Fish were collected from hatcheries in Washington and Idaho prior to release and at McNary Dam on the Columbia River during their downstream migration. Distances between 15 anatomical landmarks were digitized from photographs of each fish resulting in 34 morphometric characters for analysis. The canonical variate calculated from a discriminant function based on several principal components was evaluated as a measure of smoltification. The canonical variate was significantly correlated with gill Na + –K + ATPase activity, a commonly used measure of smoltification. Measuring the morphometric characters and calculating the canonical variate is a relatively simple procedure and can be performed with little harm to the fish. This method of smoltification assessment may be ideally suited to studies in which sacrificing fish is not possible, such as those involving threatened or endangered species, or when access to a laboratory for sample analysis is not available.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS1996

A drowned lycopsid forest above the Mahoning coal (Conemaugh Group, Upper Pennsylvanian) in eastern Ohio, U.S.A

Over 800 mud-filled casts of upright lycopsid tree stumps have been documented immediately above the Mahoning coal in an active underground mine located in northwestern Jefferson County, Ohio. The coal body originated as a pod-shaped peat body of ∼ 60 km 2 . Trees are rooted at several levels within a thin (15–40 cm) bone coal directly above the banded coal; they extend upward up to 15 cm into overlying, flat-bedded, carbonaceous mudstones that coarsen up. From a maximum basal diameter of 1.2 m, stumps taper upward to diameters no less than 0.3 m. Within single-entry transects, < 6 m wide that total 2585 m in length, stumps are randomly distributed. The trees are identified as lepidodenrids on the basis of gross morphology, external stem patterns, and attached stigmarian root systems, and provisionally as Lepidophloios or Lepidodendron by associated palynology of the enclosing matrix. Palynological analyses of incremental seam samples indicate an initial dominance of lycopsid spores with lepidodendracean affinities ( Lycospora granulata from Lepidophloios hallii ), replaced upwards by tree-fern spores, with a reoccurrence of lepidodendracean spores in the upper benches: spores of Sigillaria (Crassispora) are abundant only at the base of the coal. Petrographic analyses indicate a prallel trend from vitrinite-rich to inertinite- and liptinite-rich upward in the coal body. All data indicate that the peat represented by the Mahoning coal was drowned slowly. During the earliest stages of inundation, a lycopsid forest was re-established, only to be subsequently drowned.

International Journal of Coal Geology↗

USGS2017

Ancient lakes, Pleistocene climates and river avulsions structure the phylogeography of a large but little-known rock scorpion from the Mojave and Sonoran deserts

Recent syntheses of phylogeographical data from terrestrial animals in the Mojave and Sonoran deserts have revealed a complex history of geologic and climatic vicariance events. We studied the phylogeography of Smeringurus vachoni to see how vicariance events may have impacted a large, endemic rock scorpion. Additionally, we used the phylogeographical data to examine the validity of two subspecies of S. vachoni that were described using unconventional morphological characters. Phylogenetic, network and SAMOVA analyses indicate that S. vachoni consists of 11 clades mostly endemic to isolated desert mountain ranges. Molecular clock estimates suggest that clades diversified between the Miocene and early Pleistocene. Species distribution models predict a contraction of suitable habitat during the last glacial maximum. Landscape interpolations and Migrate-n analyses highlight areas of gene flow across the Colorado River. Smeringurus vachoni does not comprise two subspecies. Instead, the species represents at least 11 mitochondrial clades that probably diversified by vicariance associated with Pleistocene climate changes and formation of ancient lakes along the Colorado River corridor. Gene flow appears to have occurred from west to east across the Colorado River during periodic river avulsions.

Mojave Desert, Sonoran Desert↗

USGS2009

Littoral transport rates in the Santa Barbara Littoral Cell: a process-based model analysis

Identification of the sediment transport patterns and pathways is essential for sustainable coastal zone management of the heavily modified coastline of Santa Barbara and Ventura County (California, USA). A process-based model application, based on Delft3D Online Morphology, is used to investigate the littoral transport potential along the Santa Barbara Littoral Cell (between Point Conception and Mugu Canyon). An advanced optimalization procedure is applied to enable annual sediment transport computations by reducing the ocean wave climate in 10 wave height - direction classes. Modeled littoral transport rates compare well with observed dredging volumes, and erosion or sedimentation hotspots coincide with the modeled divergence and convergence of the transport gradients. Sediment transport rates are strongly dependent on the alongshore variation in wave height due to wave sheltering, diffraction and focusing by the Northern Channel Islands, and the local orientation of the geologically-controlled coastline. Local transport gradients exceed the net eastward littoral transport, and are considered a primary driver for hot-spot erosion.

California↗

USGS2006

Morphological and electrophysiological examination of olfactory sensory neurons during the early developmental prolarval stage of the sea lamprey Petromyzon marinus L

This study examined olfactory sensory neuron morphology and physiological responsiveness in newly hatched sea lamprey, Petromyzon marinus L. These prolarvae hatch shortly after neural tube formation, and stay within nests for approximately 18 days, before moving downstream to silty areas where they burrow, feed and pass to the larval stage. To explore the possibility that the olfactory system is functioning during this prolarval stage, morphological and physiological development of olfactory sensory neurons was examined. The nasal cavity contained an olfactory epithelium with ciliated olfactory sensory neurons. Axons formed aggregates in the basal portion of the olfactory epithelium and spanned the narrow distance between the olfactory epithelium and the brain. The presence of asymmetric synapses with agranular vesicles within fibers in the brain, adjacent to the olfactory epithelium suggests that there was synaptic connectivity between olfactory sensory axons and the brain. Neural recordings from the surface of the olfactory epithelium showed responses following the application of L-arginine, taurocholic acid, petromyzonol sulfate (a lamprey migratory pheromone), and water conditioned by conspecifics. These results suggest that lampreys may respond to olfactory sensory input during the prolarval stage. ?? 2006 Springer Science + Business Media, LLC.

Journal of Neurocytology↗

USGS2024

Linking temperature sensitivity of mangrove communities, populations and individuals across a tropical-temperate transitional zone

Climate change is reshaping coastal wetlands worldwide, driving ecosystem shifts like mangrove poleward expansion into saltmarshes in tropical-temperate transitional zones. Though warming is recognized as the primary driver, a lack of detailed field studies limits our ability to predict mangrove responses to rapid climate warming. Here, we characterized how mangroves vary across a temperature gradient at 18 sites along Florida's Gulf of Mexico coast (USA). We used minimum air temperature ( T min ) derived from daily data from 1989 to 2021 as the independent variable and applied plot-based and synoptic approaches to quantify species-specific mangrove variation at community, population, and individual levels. We then used these results to spatially project future mangrove ecosystem properties under multiple warming scenarios. Across the T min gradient from −10.8 to −1.4°C, mangrove canopy height and coverage ranged from 0.4 to 11.5 m and 15% to 98%, respectively, with both exhibiting sigmoidal increases with T min . Estimated mangrove aboveground biomass ranged from 0 to 496.7 Mg/ha and showed a positive linear relationship with T min due both to the tall tree stratum's increased biomass per tree and higher abundance. While the population abundance and coverage of Rhizophora mangle and Laguncularia racemosa had positive linear relationships with T min , Avicennia germinans exhibited a significant quadratic relationship, reflecting the higher freeze tolerance of this species. Such tolerance may stem from A. germinans ' higher morphological plasticity observed at the individual level, adapting to cold stress by exhibiting a more shrub-like architecture at colder sites. Based on these field-derived quantitative relationships, we projected substantial increases in mangrove coverage and canopy height near current range limits, with tall A. germinans dominating in the north and R. mangle dominating the centre and south of the study region. Synthesis. To better predict the ecological consequences in coastal wetlands under future climate change, it is essential to understand how mangroves respond to winter temperature regimes across a temperature gradient. Collectively, these cross-level and species-specific results advance our understanding of mangrove temperature sensitivity and provide information about the future of coastal wetland structure and function in response to a changing climate.

Florida↗

USGS1999

Pronounced variation in tarsal and foot feathering in the upland buzzard (Buteo hemilasius) in Mongolia

During 1994, 1995, 1997, and 1998 expeditions across Mongolia, we located over 250 upland buzzard (Buteo hemilasius) nests. At these, we noted considerable morphological variation in plumage coloration and in leg pterylosis. In 1997 and 1998, we examined 131 nests scattered across eastern and central Mongolia and report here the tarsal condition of 119 nestlings from 59 broods where young were at least 2 weeks of age. Of 119 birds carefully examined, 50 (42%) had less than fully feathered tarsi and 4 of the 69 with fully feathered tarsi had scattered feathers on their toes. Thus, 54 of 119 birds (45%) in some way deviated from the feathered tarsibare toes condition. This extraordinary degree of variability in feather patterns may be best explained as the result of extensive and relatively recent hybridization between the longlegged (Buteo rufinus) and roughlegged (B. lagopus) buzzards and/or between long-legged and upland buzzards.

Journal of Raptor Research↗

USGS2021

Evaluating establishment success of non-native fishes introduced to inland aquatic habitats of tropical Pacific islands

An information-theoretic approach was used to evaluate non-native freshwater fish species introduced to insular habitats of Hawaii and Guam comparing successful establishments vs. failures. Since the late 1800s, as many as 81 non-native freshwater fish species have been recorded as introduced to Hawaii and Guam (combined) and 50 (62%) of these are documented as having one or more established populations. We examined eleven independent variables to investigate establishment success by creating 21 a priori logistic regression models ranked using Akaike's Information Criterion adjusted for small sample size. An additional eight post-hoc models were included that comprised the best a priori model and various combinations of individual variables. The best overall model of establishment probability included effects of taxonomic affinity (family membership), prior establishment success on other tropical islands, and hypoxia tolerance. Establishment success in Hawaii and Guam was highest for those species established on many other islands, and according to our best model air-breathing fishes were more likely to become established. Six fish families, each with from three to 18 species introduced to Pacific islands, were highly successful at establishment: Cichlidae (16 established of 18 species introduced), Poeciliidae (seven of eight), Cyprinidae (four of seven), Centrarchidae (four of four), Clariidae (three of three), and Loricariidae (three of four). Those that successfully established include both small and moderately large-bodied taxa, while representing a diverse array of other morphological and life-history traits. Pathways and motives associated with fish introductions in the Pacific have been linked to desires to develop aquaculture, enhance wild stocks of food, sport, and bait fishes, for use as biological control agents, or are linked to the ornamental fish trade. We found that many established species were introduced via multiple pathways (up to eight) and our analyses suggest that the combination of prior establishment success on other tropical islands and presence of non-native fishes in multiple pathways was indicative of high propagule pressure. Our study results and conclusions on Pacific tropical island introductions are in general agreement with previous studies on non-native freshwater fishes in other regions of the world and similar to observations in continental ecosystems and temperate zones.

Hawaii↗

USGS2013

Morphological distinctiveness of Javan Tupaia hypochrysa (Scandentia, Tupaiidae)

The common treeshrew, Tupaia glis, represents a species complex with a complicated taxonomic history. It is distributed mostly south of the Isthmus of Kra on the Malay Peninsula and surrounding islands. In our recent revision of a portion of this species complex, we did not fully assess the population from Java (T. “glis” hypochrysa) because of our limited sample. Herein, we revisit this taxon using multivariate analyses in comparisons with T. glis, T. chrysogaster of the Mentawai Islands, and T. ferruginea from Sumatra. Analyses of both the manus and skull of Javan T. “glis” hypochrysa show it to be most similar to T. chrysogaster and distinct from both T. glis and T. ferruginea. Yet, the Javan population and T. chrysogaster have different mammae counts, supporting recognition of T. hypochrysa as a distinct species. The change in taxonomic status of T. hypochrysa has conservation implications for both T. glis and this Javan endemic.

Journal of Mammalogy↗

USGS2011

Characteristics, distribution, origin, and significance of opaline silica observed by the Spirit rover in Gusev crater, Mars

The presence of outcrops and soil (regolith) rich in opaline silica (∼65–92 wt % SiO 2 ) in association with volcanic materials adjacent to the “Home Plate” feature in Gusev crater is evidence for hydrothermal conditions. The Spirit rover has supplied a diverse set of observations that are used here to better understand the formation of silica and the activity, abundance, and fate of water in the first hydrothermal system to be explored in situ on Mars. We apply spectral, chemical, morphological, textural, and stratigraphic observations to assess whether the silica was produced by acid sulfate leaching of precursor rocks, by precipitation from silica‐rich solutions, or by some combination. The apparent lack of S enrichment and the relatively low oxidation state of the Home Plate silica‐rich materials appear inconsistent with the originally proposed Hawaiian analog for fumarolic acid sulfate leaching. The stratiform distribution of the silica‐rich outcrops and their porous and brecciated microtextures are consistent with sinter produced by silica precipitation. There is no evidence for crystalline quartz phases among the silica occurrences, an indication of the lack of diagenetic maturation following the production of the amorphous opaline phase.

Journal of Geophysical Research E: Planets↗

USGS2012

Dark materials in Valles Marineris: Indications of the style of volcanism and magmatism on Mars

Rifting on the equatorial canyon system of Valles Marineris provides a unique view of the interior of the Martian crust to depths reaching 7 km, exposing several in situ bedrock units which testify to past volcanic and magmatic processes on Mars. A thick, regionally extensive deposit observed in Coprates and Juventae chasmata is interpreted on the basis of spectral reflectance, erosional morphology, and tendency for eolian mobilization to be composed of mafic glass, possibly an ancient Martian analogue of the lunar terra mantling deposits. Spectral mapping suggests that the dark floor‐covering materials in the lower canyons are derived from this unit. A series of cliffs in the Ophir Chasma wall rock is interpreted to be exposures of resistant bedrock; the spectral signature of this massive and uniform unit most closely resembles that of terrestrial mafic rocks altered to or coated by crystalline hematite. Application of computer mapping techniques to probable young volcanic materials in the central troughs yields an inferred distribution of volcanic activity consistent with the interpretation of extrusion along faults near the margins of the canyon floors. This result supports the hypothesis that the valles originated through tectonic extension.

Journal of Geophysical Research B: Solid Earth↗

USGS2003

Variation in plumage, molt, and morphology of the Whiskered Auklet ( Aethia pygmaea ) in Alaska

We studied molt and size variation in Whiskered Auklets collected at sea in August from the Aleutian Islands in 1992 and 1993. We evaluated size differences from external and skeletal measurements. Adults were molting extensively in August, indicating that molt began in July. Primaries 1-5 had been completely replaced, while primaries 6-8 were in various stages of replacement, and primaries 9 and 10 were old in most birds. We also found that juveniles were not molting. This pattern is similar to other species of small auklets where breeding and molt in adults overlap, but juveniles do not molt until the following summer. This suggests that Whiskered Auklets are subjected to similar ecological constraints as other auklets. We provide the first skeletal measurements of Whiskered Auklets and some new external measurements. Results of statistical analyses indicate that there is no sexual dimorphism in adults. A small sample of juveniles suggests that they are similar in size to adults.

Journal of Field Ornithology↗

USGS1988

Relationships of phytomacrofauna to surface area in naturally occurring macrophyte stands

Most studies of the relationships between freshwater macrophytes and phytomacrofauna, or the macroinvertebrates associated with the macrophytes, have been based on individual plant collections or samples from monotypic plant stands. We describe the phytomacrofauna assemblages within naturally occurring, taxonomically mixed stands, and consider how macrophyte surface area and plant morphology influenced phytomacrofauna diversity and abundance. Samples of submersed macrophytes and phytomacrofauna were collected April-November 1979 in Anchor Bay of Lake St. Clair. Only the portions of macrophytes within the water column and invertebrates from above the sediment were considered. Densities of phytomacrofauna were not consistently related to fluctuations in macrophyte surface area, indicating that the use of macrophyte structure by the invertebrates changed during the year. Both the abundance and species richness of the phytomacrofauna were strongly related to macrophyte species richness reflecting the response of the invertebrates to the structural heterogeneity in taxonomically mixed stands. Vertically heterogeneous stands with an understory of Chara and an overstory of vascular macrophytes, for example, were likely to contain more invertebrates than stands with only one macrophyte taxon.

Journal of the North American Benthological Societ↗

USGS2014

Probabilistic estimation of dune retreat on the Gold Coast, Australia

Sand dunes are an important natural buffer between storm impacts and development backing the beach on the Gold Coast of Queensland, Australia. The ability to forecast dune erosion at a prediction horizon of days to a week would allow efficient and timely response to dune erosion in this highly populated area. Towards this goal, we modified an existing probabilistic dune erosion model for use on the Gold Coast. The original model was trained using observations of dune response from Hurricane Ivan on Santa Rosa Island, Florida, USA (Plant and Stockdon 2012. Probabilistic prediction of barrier-island response to hurricanes, Journal of Geophysical Research, 117(F3), F03015). The model relates dune position change to pre-storm dune elevations, dune widths, and beach widths, along with storm surge and run-up using a Bayesian network. The Bayesian approach captures the uncertainty of inputs and predictions through the conditional probabilities between variables. Three versions of the barrier island response Bayesian network were tested for use on the Gold Coast. One network has the same structure as the original and was trained with the Santa Rosa Island data. The second network has a modified design and was trained using only pre- and post-storm data from 1988-2009 for the Gold Coast. The third version of the network has the same design as the second version of the network and was trained with the combined data from the Gold Coast and Santa Rosa Island. The two networks modified for use on the Gold Coast hindcast dune retreat with equal accuracy. Both networks explained 60% of the observed dune retreat variance, which is comparable to the skill observed by Plant and Stockdon (2012) in the initial Bayesian network application at Santa Rosa Island. The new networks improved predictions relative to application of the original network on the Gold Coast. Dune width was the most important morphologic variable in hindcasting dune retreat, while hydrodynamic variables, surge and run-up elevation, were also important

Queensland↗

USGS2006

Hibernating bears as a model for preventing disuse osteoporosis

The hibernating bear is an excellent model for disuse osteoporosis in humans because it is a naturally occurring large animal model. Furthermore, bears and humans have similar lower limb skeletal morphology, and bears walk plantigrade like humans. Black bears (Ursus americanus) may not develop disuse osteoporosis during long periods of disuse (i.e. hibernation) because they maintain osteoblastic bone formation during hibernation. As a consequence, bone volume, mineral content, porosity, and strength are not adversely affected by annual periods of disuse. In fact, cortical bone bending strength has been shown to increase with age in hibernating black bears without a significant change in porosity. Other animals require remobilization periods 2-3 times longer than the immobilization period to recover the bone lost during disuse. Our findings support the hypothesis that black bears, which hibernate for as long as 5-7 months annually, have evolved biological mechanisms to mitigate the adverse effects of disuse on bone porosity and strength. ?? 2005 Elsevier Ltd. All rights reserved.

Journal of Biomechanics↗

USGS2005

Quantifying the rapid evolution of a nourishment project with video imagery

Spatially and temporally high-resolution video imagery was combined with traditional surveyed beach profiles to investigate the evolution of a rapidly eroding beach nourishment project. Upham Beach is a 0.6-km beach located downdrift of a structured inlet on the west coast of Florida. The beach was stabilized in seaward advanced position during the 1960s and has been nourished every 4-5 years since 1975. During the 1996 nourishment project, 193,000 m 3 of sediment advanced the shoreline as much as 175 m. Video images were collected concurrent with traditional surveys during the 1996 nourishment project to test video imaging as a nourishment monitoring technique. Video imagery illustrated morphologic changes that were unapparent in survey data. Increased storminess during the second (El Nin??o) winter after the 1996 project resulted in increased erosion rates of 0.4 m/d (135.0 m/y) as compared with 0.2 m/d (69.4 m/y) during the first winter. The measured half-life, the time at which 50% of the nourished material remains, of the nourishment project was 0.94 years. A simple analytical equation indicates reasonable agreement with the measured values, suggesting that project evolution follows a predictable pattern of exponential decay. Long-shore planform equilibration does not occur on Upham Beach, rather sediment diffuses downdrift until 100% of the nourished material erodes. The wide nourished beach erodes rapidly due to the lack of sediment bypassing from the north and the stabilized headland at Upham Beach that is exposed to wave energy.

Journal of Coastal Research↗

USGS2006

New maps, new information: Coral reefs of the Florida keys

A highly detailed digitized map depicts 22 benthic habitats in 3140.5 km2 of the Florida Keys National Marine Sanctuary. Dominant are a seagrass/lime-mud zone (map area 27.5%) throughout Hawk Channel and seagrass/carbonate-sand (18.7%) and bare carbonate-sand (17.3%) zones on the outer shelf and in The Quicksands. A lime-mud/seagrass-covered muddy carbonate-sand zone (9.6%) abuts the keys. Hardbottom communities (13.2%) consist of bare Pleistocene coralline and oolitic limestone, coral rubble, and senile coral reefs. Smaller terrestrial (4.0%) and marine habitats, including those of live coral (patch reefs, 0.7%), account for the rest (13.7%) of the area. Derived from aerial photomosaics, the seabed dataset fits precisely when transposed onto a newly developed National Geophysical Data Center hydrographic-bathymetry map. Combined, the maps point to new information on unstudied seabed morphologies, among them an erosional nearshore rock ledge bordering the seaward side of the Florida Keys and thousands of patch-reef clusters aligned in mid-Hawk Channel. Preliminary indications are that the ledge may represent the seaward extent of the 125-ka Key Largo and Miami Limestone that form the keys, and the patch reefs colonized landward edges of two noncoralline, non-dune-ridge topographic troughs. The troughs, their substrate, and inner-shelf location along the seaward side of the Hawk Channel bedrock depression are the first of that type of nuclei to be recognized in the Florida reef record. Together, the map datasets establish the efficacy and accuracy of using aerial photographs to define in extraordinary detail the seabed features and habitats in a shallow-reef setting.

Journal of Coastal Research↗