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At least 289 records · Page 16Linked to original sources
USGS2011

Modelling ecological flow regime: an example from the Tennessee and Cumberland River basins

Predictive equations were developed for 19 ecologically relevant streamflow characteristics within five major groups of flow variables (magnitude, ratio, frequency, variability, and date) for use in the Tennessee and Cumberland River basins using stepbackward regression. Basin characteristics explain 50% or more of the variation for 12 of the 19 equations. Independent variables identified through stepbackward regression were statistically significant in 78 of 304 cases (α > 0.0001) and represent four major groups: climate, physical landscape features, regional indicators, and land use. Of these groups, the regional and climate variables were the most influential for determining hydrologic response. Daily temperature range, geologic factor, and rock depth were major factors explaining the variability in 17, 15, and 13 equations, respectively. The equations and independent datasets were used to explore the broad relation between basin properties and streamflow and the implication of streamflow to the study of ecological flow requirements. Key results include a high degree of hydrologic variability among least disturbed Blue Ridge streams, similar hydrologic behaviour for watersheds with widely varying degrees of forest cover, and distinct hydrologic profiles for streams in different geographic regions. Published in 2011. This article is a US Government work and is in the public domain in the USA.

Alabama;Georgia;Kentucky;Mississippi;North Carolin↗
USGS2016

The plant phenology monitoring design for the National Ecological Observatory Network

Phenology is an integrative science that comprises the study of recurring biological activities or events. In an era of rapidly changing climate, the relationship between the timing of those events and environmental cues such as temperature, snowmelt, water availability or day length are of particular interest. This article provides an overview of the plant phenology sampling which will be conducted by the U.S. National Ecological Observatory Network NEON, the resulting data, and the rationale behind the design. Trained technicians will conduct regular in situ observations of plant phenology at all terrestrial NEON sites for the 30-year life of the observatory. Standardized and coordinated data across the network of sites can be used to quantify the direction and magnitude of the relationships between phenology and environmental forcings, as well as the degree to which these relationships vary among sites, among species, among phenophases, and through time. Vegetation at NEON sites will also be monitored with tower-based cameras, satellite remote sensing and annual high-resolution airborne remote sensing. Ground-based measurements can be used to calibrate and improve satellite-derived phenometrics. NEON’s phenology monitoring design is complementary to existing phenology research efforts and citizen science initiatives throughout the world and will produce interoperable data. By collocating plant phenology observations with a suite of additional meteorological, biophysical and ecological measurements (e.g., climate, carbon flux, plant productivity, population dynamics of consumers) at 47 terrestrial sites, the NEON design will enable continentalscale inference about the status, trends, causes and ecological consequences of phenological change.

Ecosphere↗
USGS2021

An integrated path for spatial capture–recapture and animal movement modeling

Ecologists and conservation biologists increasingly rely on spatial capture–recapture (SCR) and movement modeling to study animal populations. Historically, SCR has focused on population-level processes (e.g., vital rates, abundance, density, and distribution), whereas animal movement modeling has focused on the behavior of individuals (e.g., activity budgets, resource selection, migration). Even though animal movement is clearly a driver of population-level patterns and dynamics, technical and conceptual developments to date have not forged a firm link between the two fields. Instead, movement modeling has typically focused on the individual level without providing a coherent scaling from individual- to population-level processes, whereas SCR has typically focused on the population level while greatly simplifying the movement processes that give rise to the observations underlying these models. In our view, the integration of SCR and animal movement modeling has tremendous potential for allowing ecologists to scale up from individuals to populations and advancing the types of inferences that can be made at the intersection of population, movement, and landscape ecology. Properly accounting for complex animal movement processes can also potentially reduce bias in estimators of population-level parameters, thereby improving inferences that are critical for species conservation and management. This introductory article to the Special Feature reviews recent advances in SCR and animal movement modeling, establishes a common notation, highlights potential advantages of linking individual-level (Lagrangian) movements to population-level (Eulerian) processes, and outlines a general conceptual framework for the integration of movement and SCR models. We then identify important avenues for future research, including key challenges and potential pitfalls in the developments and applications that lie ahead.

Ecology↗
USGS2023

Bayesian spatio-temporal survival analysis for all types of censoring with application to a wildlife disease study

In this article, we consider modeling arbitrarily censored survival data with spatio-temporal covariates. We demonstrate that under the piecewise constant hazard function, the likelihood for uncensored or right-censored subjects is proportional to the likelihood of multiple conditionally independent Poisson random variables. To address left- or interval-censored subjects, we propose to impute the exact event times and convert them into uncensored subjects, enabling the application of the integrated nested Laplace approximation to update model parameters using the imputed data. We introduce an iterative algorithm that alternates between imputing event times for left- and interval-censored subjects and re-estimating model parameters. The proposed method is assessed through a simulation study and applied to analyze a spatio-temporal survival dataset in a wildlife disease study investigating bovine tuberculosis in white-tailed deer in Michigan.

Environmetrics↗
USGS2002

Large scale wildlife monitoring studies: Statistical methods for design and analysis

Techniques for estimation of absolute abundance of wildlife populations have received a lot of attention in recent years. The statistical research has been focused on intensive small-scale studies. Recently, however, wildlife biologists have desired to study populations of animals at very large scales for monitoring purposes. Population indices are widely used in these extensive monitoring programs because they are inexpensive compared to estimates of absolute abundance. A crucial underlying assumption is that the population index ( C ) is directly proportional to the population density ( D ). The proportionality constant, β , is simply the probability of 'detection' for animals in the survey. As spatial and temporal comparisons of indices are crucial, it is necessary to also assume that the probability of detection is constant over space and time. Biologists intuitively recognize this when they design rigid protocols for the studies where the indices are collected. Unfortunately, however in many field studios the assumption is clearly invalid. We believe that the estimation of detection probability should be built into the monitoring design through a double sampling approach. A large sample of points provides an abundance index, and a smaller sub-sample of the same points is used to estimate detection probability. There is an important need for statistical research on the design and analysis of these complex studies. Some basic concepts based on actual avian, amphibian, and fish monitoring studies are presented in this article.

Environmetrics↗
USGS2014

Implications of next generation attenuation ground motion prediction equations for site coefficients used in earthquake resistant design

Proposals are developed to update Tables 11.4-1 and 11.4-2 of Minimum Design Loads for Buildings and Other Structures published as American Society of Civil Engineers Structural Engineering Institute standard 7-10 (ASCE/SEI 7–10). The updates are mean next generation attenuation (NGA) site coefficients inferred directly from the four NGA ground motion prediction equations used to derive the maximum considered earthquake response maps adopted in ASCE/SEI 7–10. Proposals include the recommendation to use straight-line interpolation to infer site coefficients at intermediate values of (average shear velocity to 30-m depth). The NGA coefficients are shown to agree well with adopted site coefficients at low levels of input motion (0.1 g) and those observed from the Loma Prieta earthquake. For higher levels of input motion, the majority of the adopted values are within the 95% epistemic-uncertainty limits implied by the NGA estimates with the exceptions being the mid-period site coefficient, F v , for site class D and the short-period coefficient, F a , for site class C, both of which are slightly less than the corresponding 95% limit. The NGA data base shows that the median value of 913 m/s for site class B is more typical than 760 m/s as a value to characterize firm to hard rock sites as the uniform ground condition for future maximum considered earthquake response ground motion estimates. Future updates of NGA ground motion prediction equations can be incorporated easily into future adjustments of adopted site coefficients using procedures presented herein. Published 2014. This article is a U.S. Government work and is in the public domain in the USA. Earthquake Engineering & Structural Dynamics published by John Wiley & Sons Ltd.

Earthquake Engineering and Structural Dynamics↗
USGS2007

Does amplitude scaling of ground motion records result in biased nonlinear structural drift responses?

Limitations of the existing earthquake ground motion database lead to scaling of records to obtain seismograms consistent with a ground motion target for structural design and evaluation. In the engineering seismology community, acceptable limits for 'legitimate' scaling vary from one (no scaling allowed) to 10 or more. The concerns expressed by detractors of scaling are mostly based on the knowledge of, for example, differences in ground motion characteristics for different earthquake magnitude-distance (Mw-Rclose) scenarios, and much less on their effects on structures. At the other end of the spectrum, proponents have demonstrated that scaling is not only legitimate but also useful for assessing structural response statistics for Mw-Rclose scenarios. Their studies, however, have not investigated more recent purposes of scaling and have not always drawn conclusions for a wide spectrum of structural vibration periods and strengths. This article investigates whether scaling of records randomly selected from an Mw-Rclose bin (or range) to a target fundamental-mode spectral acceleration (Sa) level introduces bias in the expected nonlinear structural drift response of both single-degree-of-freedom oscillators and one multi-degree-of-freedom building. The bias is quantified relative to unscaled records from the target Mw-Rclose bin that are 'naturally' at the target Sa level. We consider scaling of records from the target Mw-Rclose bin and from other Mw-Rclose bins. The results demonstrate that scaling can indeed introduce a bias that, for the most part, ca be explained by differences between the elastic response spectra of the scaled versus unscaled records. Copyright ?? 2007 John Wiley & Sons, Ltd.

Earthquake Engineering and Structural Dynamics↗
USGS2012

Measuring gravel transport and dispersion in a mountain river using passive radio tracers

Random walk models of fluvial sediment transport recognize that grains move intermittently, with short duration steps separated by rests that are comparatively long. These models are built upon the probability distributions of the step length and the resting time. Motivated by these models, tracer experiments have attempted to measure directly the steps and rests of sediment grains in natural streams. This paper describes results from a large tracer experiment designed to test stochastic transport models. We used passive integrated transponder (PIT) tags to label 893 coarse gravel clasts and placed them in Halfmoon Creek, a small alpine stream near Leadville, Colorado, USA. The PIT tags allow us to locate and identify tracers without picking them up or digging them out of the streambed. They also enable us to find a very high percentage of our rocks, 98% after three years and 96% after the fourth year. We use the annual tracer displacement to test two stochastic transport models, the Einstein–Hubbell–Sayre (EHS) model and the Yang–Sayre gamma-exponential model (GEM). We find that the GEM is a better fit to the observations, particularly for slower moving tracers and suggest that the strength of the GEM is that the gamma distribution of step lengths approximates a compound Poisson distribution. Published in 2012. This article is a US Government work and is in the public domain in the USA.

Earth Surface Processes and Landforms↗
USGS2015

Export of fine particulate organic carbon from redwood-dominated catchments

Recently, researchers have recognized the significant role of small mountainous river systems in the transport of carbon from terrestrial environments to the ocean, and the scale of such studies have ranged from channel bed units to continents. In temperate zones, these mountain river systems commonly drain catchments that are largely forested. However, the magnitude of carbon export from rivers draining old-growth redwood forests has not been evaluated to date. Old-growth redwood stands support some of the largest quantities of biomass in the world, up to 350 000 Mg of stem biomass km -2 and soil organic carbon can reach 46 800 Mg km -2 . In north coastal California, suspended sediment samples were collected at three gaging stations for two to four years on streams draining old-growth redwood forests. Carbon content, determined through loss-on-ignition tests, was strongly correlated with turbidity, and continuous turbidity records from the gaging stations were used to estimate annual carbon exports of 1 · 6 to 4 · 2 Mg km -2  yr -1 . These values, representing 13 to 33% of the suspended sediment load, are some of the highest percentages reported in the global literature. The fraction of organic carbon as part of the suspended sediment load decreased with discharge, but reached an asymptote of 5 to 10% at flows 10 to 20 times the mean annual flows. Although larger rivers in this region exhibit high sediment yields (up to 3600 Mg km -2  yr -1 ), mainly attributed to high rates of uplift, mass movement, and timber harvest, the small pristine streams in this study have sediment yields of only 8 to 100 Mg km -2  yr -1 . Because the current extent of old-growth redwood stands is less than 5% of its pre-European-settlement distribution, the present organic carbon signature in suspended sediment loads in this region is likely different from that in the early 20th century. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.

California↗
USGS2016

Characterizing supraglacial meltwater channel hydraulics on the Greenland Ice Sheet from in situ observations

Supraglacial rivers on the Greenland ice sheet (GrIS) transport large volumes of surface meltwater toward the ocean, yet have received relatively little direct research. This study presents field observations of channel width, depth, velocity, and water surface slope for nine supraglacial channels on the southwestern GrIS collected between 23 July and 20 August, 2012. Field sites are located up to 74 km inland and span 494-1485 m elevation, and contain measured discharges larger than any previous in situ study: from 0.006 to 23.12 m 3 /s in channels 0.20 to 20.62 m wide. All channels were deeply incised with near vertical banks, and hydraulic geometry results indicate that supraglacial channels primarily accommodate greater discharges by increasing velocity. Smaller streams had steeper water surface slopes (0.74-8.83%) than typical in terrestrial settings, yielding correspondingly high velocities (0.40-2.60 m/s) and Froude numbers (0.45-3.11) with supercritical flow observed in 54% of measurements. Derived Manning's n values were larger and more variable than anticipated from channels of uniform substrate, ranging from 0.009 to 0.154 with a mean value of 0.035 +/- 0.027 despite the absence of sediment, debris, or other roughness elements. Ubiquitous micro-depressions in shallow sections of the channel bed may explain some of these roughness values. However, we find that other, unobserved sources of flow resistance likely contributed to these elevated n values: future work should explicitly consider additional sources of flow resistance beyond bed roughness in supraglacial channels. We conclude that hydraulic modelling for these channels must allow for both sub- and supercritical flow, and most importantly must refrain from assuming that all ice-substrate channels exhibit similar hydraulic behavior, especially for Froude numbers and Manning's n. Finally, this study highlights that further theoretical and empirical work on supraglacial channel hydraulics is necessary before broad scale understanding of ice sheet hydrology can be achieved. This article is protected by copyright. All rights reserved.

Earth Surface Processes and Landforms↗
USGS2018

Dust on a Hawaiian volcano: A regional model using field measurements to estimate transport and deposition

The western slopes of Hawaii's Mauna Kea volcano are mantled by fine-grained soils, the record of volcanic airfall and eolian deposition. Where exposed, strong winds transport this sediment across West Hawaii, affecting tourism and local communities with decreased air and water quality. Operations on US Army's Ke'amuku Maneuver Area (KMA) have the potential to increase dust flux from these deposits. The USGS established 18 ground monitoring sites and sampling locations surrounding KMA. For over 3 years, each station measured vertical and horizontal dust flux, while co-located anemometers measured wind speed and direction. We used these datasets to develop a parsimonious regional model for dust supply and transport to assess whether KMA is a net dust sink or source. We found that dust transport is most highly correlated with threshold wind speeds of 8 m/s. We used this value as the regional average threshold wind speed for dust entrainment. Using a model that partitions measured horizontal dust flux into inward- and outward-directed components, we estimate that KMA is currently a net dust sink. Geochemical analysis of dust samples illustrates that local organics and carbonate make up 64% of dust mass, the remainder being volcanic silt and fine sand. Measured vertical dust deposition rates of 0.006 mm/yr are similar to 0.004 mm/yr of deposition predicted from taking the divergence of dust across KMA's boundary. These rates are low compared with pre-historic rates of ~0.2–0.3 mm/yr, from radiocarbon dating of buried soils. KMA's soils record persistent deposition over millennia, at rates that imply episodic dust storms. Such events created a soil-mantled landscape in the middle of a largely Pleistocene rocky landscape. A substantial portion of fine-grained soils in other leeward Hawaiian Island landscapes may have formed from similar eolian deposition, and not direct weathering of parent rock. Published 2018. This article is a U.S. Government work and is in the public domain in the USA.

Hawaii↗
USGS2019

Estimating sand concentrations using ADCP‐based acoustic inversion in a large fluvial system characterized by bi‐modal suspended‐sediment distributions

Quantifying sediment flux within rivers is a challenge for many disciplines due, mainly, to difficulties inherent to traditional sediment sampling methods. These methods are operationally complex, high cost, and high risk. Additionally, the resulting data provide a low spatial and temporal resolution estimate of the total sediment flux, which has impeded advances in the understanding of the hydro‐geomorphic characteristics of rivers. Acoustic technologies have been recognized as a leading tool for increasing the resolution of sediment data by relating their echo intensity level measurements to suspended sediment. Further effort is required to robustly test and develop these techniques across a wide range of conditions found in natural river systems. This article aims to evaluate the application of acoustic inversion techniques using commercially available, down‐looking acoustic Doppler current profilers (ADCPs) in quantifying suspended sediment in a large sand bed river with varying bi‐modal particle size distributions, wash load and suspended‐sand ratios, and water stages. To achieve this objective, suspended sediment was physically sampled along the Paraná River, Argentina, under various hydro‐sedimentological regimes. Two ADCPs emitting different sound frequencies were used to simultaneously profile echo intensity level within the water column. Using the sonar equation, calibrations were determined between suspended‐sand concentrations and acoustic backscatter to solve the inverse problem. The study also analyzed the roles played by each term of the sonar equation, such as ADCP frequency, power supply, instrument constants, and particle size distributions typically found in sand bed rivers, on sediment attenuation and backscatter. Calibrations were successfully developed between corrected backscatter and suspended‐sand concentrations for all sites and ADCP frequencies, resulting in mean suspended‐sand concentration estimates within about 40% of the mean sampled concentrations. Noise values, calculated using the sonar equation and sediment sample characteristics, were fairly constant across evaluations, suggesting that they could be applied to other sand bed rivers.

Earth Surface Processes and Landforms↗
USGS2024

Correction to A regime shift in sediment export from a coastal watershed during a record wet winter, California: Implications for landscape response to hydroclimatic extremes

In the referenced article, the authors would like to correct text in the first paragraph on page 2571, Figure 9 and its caption. The changes reflect an error made in the processing of the rainfall intensity-duration data used to compare storms to published debris flow triggering thresholds. The correctly processed data does not change the interpretations made in the paper but does correctly indicate that the investigated storms did not exceed the rainfall intensity – duration threshold of Cannon (1988) but did significantly exceed the debris flow triggering threshold of Wieczorek (1987).

Earth Surface Processes and Landforms↗
USGS2025

Improving hydroacoustic methods for monitoring suspended-sand flux and grain size in sediment-laden rivers

Suspended-sand concentration and grain-size data in rivers provide valuable information on the catchment's dynamics for scientists and river managers. Producing continuous measurements of suspended-sand concentrations remains a scientific challenge due to their high spatial and temporal variability. Traditional methods such as sediment-rating curves may be highly uncertain, and optical turbidity is insensitive to coarse particles when there are many fine particles. Surrogate hydroacoustic methods aim to improve sand concentration measurements. These single- or dual-frequency acoustic methods use acoustic attenuation and/or backscatter to estimate fine-sediment (i.e., silt and clay) and/or sand concentration and possibly grain size. New methods have recently been developed and applied in rivers exhibiting a wide range of sediment conditions in North America but not independently tested elsewhere by other researchers. In this article, we apply, adapt and evaluate hydroacoustic methods to continuously estimate suspended-sand concentration and grain size in an Alpine river with high suspended-sediment concentrations. From the example of the River Isère at Grenoble Campus, France, we show that the hydroacoustic methods adapted to local conditions may yield valuable sand concentration estimates consistent with traditional measurements. Compared with prior knowledge, limited additional information on the grain size can be obtained due to high uncertainties. Hydroacoustic concentration estimates are more sensitive to real changes in concentration at the event scale than traditional rating-curve methods that relate concentration to discharge only. These findings open the perspective for facilitated sand concentration monitoring at a higher temporal resolution with decreased field work.

Grenoble Campus↗
USGS2013

The influence of global climate change on the scientific foundations and applications of Environmental Toxicology and Chemistry: Introduction to a SETAC international workshop

This is the first of seven papers resulting from a Society of Environmental Toxicology and Chemistry (SETAC) international workshop titled “The Influence of Global Climate Change on the Scientific Foundations and Applications of Environmental Toxicology and Chemistry.” The workshop involved 36 scientists from 11 countries and was designed to answer the following question: How will global climate change influence the environmental impacts of chemicals and other stressors and the way we assess and manage them in the environment? While more detail is found in the complete series of articles, some key consensus points are as follows: (1) human actions (including mitigation of and adaptation to impacts of global climate change [GCC]) may have as much influence on the fate and distribution of chemical contaminants as does GCC, and modeled predictions should be interpreted cautiously; (2) climate change can affect the toxicity of chemicals, but chemicals can also affect how organisms acclimate to climate change; (3) effects of GCC may be slow, variable, and difficult to detect, though some populations and communities of high vulnerability may exhibit responses sooner and more dramatically than others; (4) future approaches to human and ecological risk assessments will need to incorporate multiple stressors and cumulative risks considering the wide spectrum of potential impacts stemming from GCC; and (5) baseline/reference conditions for estimating resource injury and restoration/rehabilitation will continually shift due to GCC and represent significant challenges to practitioners.

Environmental Toxicology and Chemistry↗
USGS2016

Spatial and temporal variation in microcystins occurrence in wadeable streams in the southeastern USA

Despite historical observations of potential microcystin-producing cyanobacteria (including Leptolyngbya , Phormidium , Pseudoanabaena , and Anabaena species) in 74% of headwater streams in Alabama, Georgia, South Carolina, and North Carolina (USA) from 1993 to 2011, fluvial cyanotoxin occurrence has not been systematically assessed in the southeastern United States. To begin to address this data gap, a spatial reconnaissance of fluvial microcystin concentrations was conducted in 75 wadeable streams in the Piedmont region (southeastern USA) during June 2014. Microcystins were detected using enzyme-linked immunosorbent assay (limit = 0.10 µg/L) in 39% of the streams with mean, median, and maximum detected concentrations of 0.29 µg/L, 0.11 µg/L, and 3.2 µg/L, respectively. Significant (α = 0.05) correlations were observed between June 2014 microcystin concentrations and stream flow, total nitrogen to total phosphorus ratio, and water temperature; but each of these factors explained 38% or less of the variability in fluvial microcystins across the region. Temporal microcystin variability was assessed monthly through October 2014 in 5 of the streams where microcystins were observed in June and in 1 reference location; microcystins were repeatedly detected in all but the reference stream. Although microcystin concentrations in the present study did not exceed World Health Organization recreational guidance thresholds, their widespread occurrence demonstrates the need for further investigation of possible in-stream environmental health effects as well as potential impacts on downstream lakes and reservoirs. Environ Toxicol Chem 2016;9999:1–7. Published 2016 Wiley Periodicals Inc. on behalf of SETAC. This article is a US Government work and, as such, is in the public domain in the United States of America.

Alabama, Georgia, Maryland, North Carolina, South ↗
USGS2016

An automated approach to Litchfield and Wilcoxon's evaluation of dose–effect experiments using the R package LW1949

The authors developed a package, LW1949, for use with the statistical software R to automatically carry out the manual steps of Litchfield and Wilcoxon's method of evaluating dose–effect experiments. The LW1949 package consistently finds the best fitting dose–effect relation by minimizing the chi-squared statistic of the observed and expected number of affected individuals and substantially speeds up the line-fitting process and other calculations that Litchfield and Wilcoxon originally carried out by hand. Environ Toxicol Chem 2016;9999:1–4. Published 2016 Wiley Periodicals Inc. on behalf of SETAC. This article is a US Government work and, as such, is in the public domain in the United States of America.

Environmental Toxicology and Chemistry↗
USGS2016

Alternative approaches to vertebrate ecotoxicity tests in the 21st century: A review of developments over the last 2 decades and current status

The need for alternative approaches to the use of vertebrate animals for hazard assessment of chemicals and pollutants has become of increasing importance. It is now the first consideration when initiating a vertebrate ecotoxicity test, to ensure that unnecessary use of vertebrate organisms is minimized wherever possible. For some regulatory purposes, the use of vertebrate organisms for environmental risk assessments has been banned; in other situations, the number of organisms tested has been dramatically reduced or the severity of the procedure refined. However, there is still a long way to go to achieve a complete replacement of vertebrate organisms to generate environmental hazard data. The development of animal alternatives is based not just on ethical considerations but also on reducing the cost of performing vertebrate ecotoxicity tests and in some cases on providing better information aimed at improving environmental risk assessments. The present Focus article provides an overview of the considerable advances that have been made toward alternative approaches for ecotoxicity assessments over the last few decades.

Environmental Toxicology and Chemistry↗