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Algal and water-quality data for Rapid Creek and Canyon Lake near Rapid City, South Dakota, 2007

This report summarizes the results of algae and water-quality sampling on Rapid Creek and Canyon Lake during May and September 2007. The overall purpose of the study was to determine the algal community composition of Rapid Creek and Canyon Lake in relation to organisms that are known producers of unwanted tastes and odors in drinking-water supplies. Algal assemblage structure (phytoplankton and periphyton) was examined at 16 sites on Rapid Creek and Canyon Lake during May and September 2007, and actinomycetes bacteria were sampled at the Rapid City water treatment plant intake in May 2007, to determine if taste-and-odor producing organisms were present. During the May 2007 sampling, 3 Rapid Creek sites and 4 Canyon Lake sites were quantitatively sampled for phytoplankton in the water column, 7 Rapid Creek sites were quantitatively sampled for attached periphyton, and 4 lake and retention pond sites were qualitatively sampled for periphyton. Five Rapid Creek sites were sampled for geosmin and 2-methylisoborneol, two common taste-and-odor causing compounds known to affect water supplies. During the September 2007 sampling, 4 Rapid Creek sites were quantitatively sampled for attached periphyton, and 3 Canyon Lake sites were qualitatively sampled for periphyton. Water temperature, dissolved oxygen, pH, and specific conductance were measured during each sampling event. Methods of collection and sample analysis are presented for the various types of biological and chemical constituent samples. Diatoms comprised 91-100 percent of the total algal biovolume in periphyton samples collected during May and September. Cyanobacteria (also called blue-green algae) were detected in 7 of the 11 quantitative periphyton samples and ranged from 0.01 to 2.0 percent of the total biovolume. Cyanobacteria were present in 3 of the 7 phytoplankton samples collected in May, but the relative biovolumes were small (0.01-0.2 percent). Six of seven qualitative samples collected from Canyon Lake and retention ponds during May and September also contained cyanobacteria. Geosmin and 2-methylisoborneol concentrations were less than detection limits (0.005 ug/L) in all five of the Rapid Creek samples collected in May. Actinomycetes bacteria were present at the water treatment plant intake in May 2007, at a concentration of 6 colonies per milliliter. During this study, no taste-and-odor problems with the drinking water within the study area were reported. However, the presence of cyanobacterial taxa known to contain taste-and-odor producing strains (such as Leptolyngbya, Phormidium, and Anabaena) indicates the potential for taste-and-odor problems under certain physical and chemical conditions.

South Dakota↗

Biological Soil Crusts: Webs of Life in the Desert

Although the soil surface may look like dirt to you, it is full of living organisms that are a vital part of desert ecosystems. This veneer of life is called a biological soil crust. These crusts are found throughout the world, from hot deserts to polar regions. Crusts generally cover all soil spaces not occupied by green plants. In many areas, they comprise over 70% of the living ground cover and are key in reducing erosion, increasing water retention, and increasing soil fertility. In most dry regions, these crusts are dominated by cyanobacteria (previously called blue-green algae), which are one of the oldest known life forms. Communities of soil crusts also include lichens, mosses, microfungi, bacteria, and green algae. These living organisms and their by-products create a continuous crust on the soil surface. The general color, surface appearance, and amount of coverage of these crusts vary depending on climate and disturbance patterns. Immature crusts are generally flat and the color of the soil, which makes them difficult to distinguish from bare ground. Mature crusts, in contrast, are usually bumpy and dark-colored due to the presence of lichens, mosses, and high densities of cyanobacteria and other organisms.

Fact Sheet↗

Hydrology and water quality of Park Lake, south-central Wisconsin

Park Lake extends to the northeast from the village of Pardeeville in Columbia County (fig. 1). Local residents perceive water-quality problems in the lake that include excessive algae and aquatic plant growth. Algae and plant growth in a lake are controlled, in part, by the availability of phosphorus in the water. However, no measurements of phosphorus enter- ing the lake or of other factors that affect lake-water quality had been made, and available data on water quality were limited to 2 years of measurements at one site in the lake in 1986- 87. To obtain the data and in- formation needed to address the water-quality problems at Park Lake and to develop a management plan that would limit the input of phosphorus to the lake, the U.S. Geologi- cal Survey, in cooperation with the Park Lake Management District, studied the hydrology of the lake and collected data needed to determine sources and amount of phosphorus en- tering the lake. This Fact Sheet summarizes the results of that study. Data collected during the study were published in a separate report (Holmstrom and others, 1994, p. 70-85).

Wisconsin↗

Harmful algal blooms

What are Harmful Algal Blooms (HABs)? Freshwater and marine harmful algal blooms (HABs) can occur anytime water use is impaired due to excessive accumulations of algae. HAB occurrence is affected by a complex set of physical, chemical, biological, hydrological, and meteorological conditions making it difficult to isolate specific causative environmental factors. Potential impairments include reduction in water quality, accumulation of malodorous scums in beach areas, algal production of toxins potent enough to poison both aquatic and terrestrial organisms, and algal production of taste-and-odor compounds that cause unpalatable drinking water and fish. HABs are a global problem, and toxic freshwater and (or) marine algae have been implicated in human and animal illness and death in over 45 countries worldwide and in at least 27 U.S. States (Yoo and others, 1995; Chorus and Bartram, 1999; Huisman and others, 2005).

Fact Sheet↗

Coral calcification in a changing ocean

Animals and plants that live in the ocean form skeletons and other hard parts by combining calcium ions and carbonate ions to create calcium carbonate. This process is called calcification. In tropical and subtropical oceans, the calcification of corals and other organisms creates reefs that protect islands, produce beautiful white-sand beaches, and create habitat for thousands of species that live on coral reefs. Many reefs around the globe are declining in health. Live, reef-building corals are becoming scarcer, often being replaced by fleshy algae (seaweeds) that do not build reefs. Many factors contribute to reef decline, but scientific consensus is that coral bleaching, coral disease, overfishing, and coastal development are largely to blame. It is the role of the U.S. Geological Survey (USGS) to provide science that informs the decision-making process of those who are tasked with managing reef resources under U.S. jurisdiction. One of the goals of the Coral Reef Ecosystem Studies (CREST) project is to examine how calcification rates in reef-building corals and encrusting coralline algae are changing in response to changes in the ocean environment.

Fact Sheet↗

Streamflow characteristics and benthic invertebrate assemblages in streams across the western United States

Hydrographic characteristics of streamflow, such as high-flow pulses, base flow (background discharge between floods), extreme low flows, and floods, significantly influence aquatic organisms. Streamflow can be described in terms of magnitude, timing, duration, frequency, and variation (hydrologic regime). These characteristics have broad effects on ecosystem productivity, habitat structure, and ultimately on resident fish, invertebrate, and algae communities. Increasing human use of limited water resources has modified hydrologic regimes worldwide. Identifying the most ecologically significant hydrographic characteristics would facilitate the development of water-management strategies. Benthic invertebrates include insects, mollusks (snails and clams), worms, and crustaceans (shrimp) that live on the streambed. Invertebrates play an important role in the food web, consuming other invertebrates and algae and being consumed by fish and birds. Hydrologic alteration associated with land and water use can change the natural hydrologic regime and may affect benthic invertebrate assemblage composition and structure through changes in density of invertebrates or taxa richness (number of different species). This study examined associations between the hydrologic regime and characteristics of benthic invertebrate assemblages across the western United States and developed tools to identify streamflow characteristics that are likely to affect benthic invertebrate assemblages.

Fact Sheet↗

Phosphorus and groundwater: Establishing links between agricultural use and transport to streams

Phosphorus is a highly reactive element that is essential for life and forms a variety of compounds in terrestrial and aquatic ecosystems. In water, phosphorus may be present as the orthophosphate ion (PO 4 3- ) and is also present in all life forms as an essential component of cellular material. In natural ecosystems, phosphorus is derived from the erosion of rocks and is conserved for plant growth as it is returned to the soil through animal waste and the decomposition of plant and animal tissue; but in agricultural systems, a portion of the phosphorus is removed with each harvest, especially since phosphorus is concentrated in the seeds and fruit. Phosphorus is added to soil by using chemical fertilizers, manure, and composted materials. Agricultural use of chemical phosphorus fertilizer, in the United States, in 2008 was 4,247,000 tons, which is an increase of 25 percent since 1964 (http://www.ers.usda.gov/Data/FertilizerUse/). Widely grown corn, soybeans, and wheat use the greatest amount of phosphorus fertilizer among agricultural crops. Phosphorus is largely retained in soil by a process called adsorption. Soils have a limited capacity to store phosphorus, and once the capacity of soil to adsorb phosphorus is exceeded, the excess will dissolve and move more freely with water either directly to a stream or downward to an aquifer. Surface-water runoff from rainstorms or excess irrigation is the primary way that phosphorus or soil containing phosphorus is transported to streams in most watersheds. There is a growing awareness that long-term over-application of manure and chemical fertilizer contributes to phosphorus movement into the groundwater system, resulting in a significant groundwater source of phosphorus to streams and lakes, as well as potential contamination of the groundwater resources. Leaching of applied fertilizer and surface runoff of phosphorus from the soil can contribute to excess growth of algae in downstream water bodies, a condition known as eutrophication. Excessive amounts of algae in eutrophic water bodies can cause large daily changes in the amount of dissolved oxygen in the water because oxygen concentrations tend to be high during daylight hours as a result of photosynthetic activity but then decrease at night. Low concentrations of dissolved oxygen can stress or kill sensitive species living in the water. This study examined concentrations and movement of phosphorus in the soils and groundwater in five agricultural settings across the United States characterized by differences in soil geochemistry, climate, irrigation usage, and cropping systems to assess potential phosphorus movement in the soil and groundwater under common agricultural conditions. The study design included assessment of a variety of agricultural practices, especially cropping patterns and irrigation, so that the factors that contribute to phosphorus movement to groundwater, or sequestration of the phosphorus to soil could be compared and examined. This type of information could potentially be used to formulate best management practices to limit the transport of phosphorus from the agricultural fields.

Fact Sheet↗

Water-quality parameters and benthic algal communities at selected streams in Minnesota, August 2000 - Study design, methods and data

Water-quality measurements and benthic algal samples were measured or collected from select Minnesota streams as part of a multiagency (Minnesota Pollution Control Agency, Minnesota Department of Natural Resources, U.S. Environmental Protection Agency, and U.S. Geological Survey) study. The goal of the multiagency study was to identify quantifiable thresholds of water-quality impairment and establish quantifiable indicators of nutrient enrichment for medium to high-order streams. This report describes the study design, sampling methods, and summarizes the physical, chemical, and benthic algal data for a component of the multiagency study that was designed to document diurnal water-quality measurements (specific conductance, pH, water temperature, and dissolved oxygen), benthic algal community composition and chlorophyll-a content, and primary productivity at 12 stream sites on 6 streams in Minnesota during August 2000. Specific conductance, pH, water temperature, dissolved oxygen concentrations and percent dissolved oxygen saturation measurements were made with submersible data recorders at 30 minute intervals for a period of 3-6 days during August 2000. Benthic algae collected from wood and rock substrate were identified and enumerated. Biovolume (volume of algal cells per unit area), density (number of cells per unit area), and chlorophyll-a content from benthic algae were determined. These data can be used as part of the multiagency study to develop an understanding of the relations among nutrient concentrations, algal abundance, algal community composition, and primary production and respiration processes in rivers of differing ecoregions in Minnesota.

Minnesota↗

Characterization of the hydrology, water chemistry, and aquatic communities of selected springs in the St. Johns River Water Management District, Florida, 2004

The hydrology, water chemistry, and aquatic communities of Silver Springs, De Leon Spring, Gemini Springs, and Green Spring in the St. Johns River Water Management District, Florida, were studied in 2004 to provide a better understanding of each spring and to compile data of potential use in future water-management decisions. Ground water that discharges from these and other north-central Florida springs originates from the Upper Floridan aquifer of the Floridan aquifer system, a karstic limestone aquifer that extends throughout most of the State's peninsula. This report summarizes data about flow, water chemistry, and aquatic communities, including benthic invertebrates, fishes, algae, and aquatic macrophytes collected by the U.S. Geological Survey, the St. Johns River Water Management District, and the Florida Department of Environmental Protection during 2004, as well as some previously collected data. Differences in water chemistry among these springs reflect local differences in water chemistry in the Upper Floridan aquifer. The three major springs sampled at the Silver Springs group (the Main Spring, Blue Grotto, and the Abyss) have similar proportions of cations and anions but vary in nitrate and dissolved oxygen concentrations. Water from Gemini Springs and Green Spring has higher proportions of sodium and chloride than the Silver Springs group. Water from De Leon Spring also has higher proportions of sodium and chloride than the Silver Springs group but lower proportions of calcium and bicarbonate. Nitrate concentrations have increased over the period of record at all of the springs except Green Spring. Compounds commonly found in wastewater were found in all the springs sampled. The most commonly detected compound was the insect repellant N,N'-diethyl-methyl-toluamide (DEET), which was found in all the springs sampled except De Leon Spring. The pesticide atrazine and its degradate 2-chloro-4-isopropylamino-6-amino-s-triazine (CIAT) were detected in water from the Silver Springs group and in both boils at Gemini Springs. No pesticides were detected in water samples from De Leon Spring and Green Spring. Evidence of denitrification was indicated by the presence of excess nitrogen gas in water samples from most of the springs. Aquatic communities varied among the springs. Large floating mats of cyanobacteria (blue-green algae), identified as Lyngbya wollei, were observed in De Leon Spring during all sampling events in 2004. At Gemini Springs, the dominant periphyton was Rhizoclonium sp. Of the three springs sampled for benthic invertebrates, De Leon Spring had the highest overall species richness and most disturbance intolerant species (Florida Index = 4). Green Spring had the lowest species richness of the springs sampled. Based on qualitative comparisons, overall macroinvertebrate species richness seemed to be negatively related to magnesium, potassium, sodium, and specific conductance. Invertebrate abundance was greatest when dissolved oxygen and nitrate were high but phosphorus and potassium concentrations were low. Dipteran abundance seemed to be positively associated with specific conductance and total organic carbon but negatively associated with nitrate-N. Amphipods were the numerically dominant group collected in most (six of nine) collections. Shifts in amphipod abundance of the two species collected (Gammarus sp. and Hyalella azteca) varied by season among the three springs, but there were no trends evident in the variation. Fish populations were relatively species-rich at the Silver Springs group, De Leon Spring, and Gemini Springs, but not at Green Spring. Nonindigenous fish species were observed at all springs except Green Spring.

Open-File Report↗

Total selenium and selenium species in irrigation drain inflows to the Salton Sea, California, October 2007 and January 2008

This report presents the results for two sampling periods (October 2007 and January 2008) during a 4-year monitoring program to characterize selenium concentrations in selected irrigation drains flowing into the Salton Sea, California. Total selenium, selenium species (selenite, selenate, organoselenium), and total suspended solids were determined in water samples, and total selenium was determined in sediment, detritus, and biota that included algae, plankton, midge larvae (family, Chironomidae), and two fish species?western mosquitofish (Gambusia affinis) and sailfin molly (Poecilia latipinna). In addition, sediments were analyzed for percent total organic carbon and particle size. Mean total selenium concentrations in water for both sampling periods ranged from 0.97 to 64.5 micrograms per liter, predominately as selenate, which is typical of waters where selenium is leached out of selenium-containing marine shales and associated soils under alkaline and oxidizing conditions. Total selenium concentrations (micrograms per gram dry weight) ranged as follows: algae, 0.95 to 5.99; plankton, 0.15 to 19.3; midges, 1.39 to 15.4; fish, 3.71 to 25.1; detritus, 0.85 to 21.7; sediment, 0.32 to 7.28.

Open-File Report↗

Biological communities and geomorphology of patch reefs in Biscayne National Park, Florida, U.S.A.

Coral reef ecosystem management benefits from continual, quantitative assessment of the resources being managed, plus assessment of factors that affect distribution patterns of organisms in the ecosystem. In this study, we investigated the relationships among physical, benthic, and fish variables in effort to help explain the distribution patterns of ecologically and economically important species on twelve patch reefs within Biscayne National Park (BNP), Florida, U.S.A. We visited 196 randomly-located sampling stations across twelve shallow (< 10m) patch reefs, using SCUBA to conduct our surveys. We measured physical variables (e.g., substratum type), estimated the percent cover of benthic community members (e.g., coral, algae), and counted and estimated mean size for each fish species observed. We also used high-density bathymetric data collected remotely via airborne laser surveying (Experimental Advanced Airborne Research Lidar (EAARL)) to calculate rugosity (bumpiness) of the reef habitat. Here we present our findings visually by graphing our quantitative community and physical structure data simultaneously in a GIS map format. You will see that biological organisms arrange themselves on each patch reef in a non-random manner. For example, many species of fish prefer to locate themselves in areas of the reef where the rugosity index is high. Rugose parts of the reef provide them with good hiding places from predators. These maps (and the data used to create them) are permanent records of the status of reef resources found on these twelve patch reefs in BNP as of September, 2003. The survey data found in the shapefile located on this CD product includes benthic percent cover data for algae, coral, encrusting invertebrates, and substratum type, in addition to gorgonian abundance and volume, total fish abundance and species richness, and specific counts for Acanthurids (surgeonfish), Scarids (parrotfish), Lutjanids (snappers), Haemulids (grunts), Serranids (groupers), and Pomacentrids (damselfish).

Florida↗

Total selenium and selenium species in irrigation drain inflows to the Salton Sea, California, April and July 2008

This report presents the results for two sampling periods (April 2008 and July 2008) during a 4-year monitoring program to characterize selenium concentrations in selected irrigation drains flowing into the Salton Sea, California. Total selenium, selenium species (dissolved selenite, selenate, organoselenium), and total suspended solids were determined in water samples and total selenium was determined in water column particulates and in sediment, detritus, and biota that included algae, plankton, midge larvae (family, Chironomidae), and two fish species - western mosquitofish (Gambusia affinis) and sailfin molly (Poecilia latipinna). In addition, sediments were analyzed for percent total organic carbon and particle size. Mean total selenium concentrations in water for both sampling periods ranged from 1.93 to 44.2 micrograms per liter, predominately as selenate, which is typical of waters where selenium is leached out of selenium-containing marine shales and associated soils under alkaline and oxidizing conditions. Total selenium concentrations (micrograms per gram dry weight) ranged as follows: algae, 0.75 to 3.39; plankton, 0.88 to 4.03; midges, 2.52 to 44.3; fish, 3.37 to 18.9; detritus, 1.11 to 13.6; sediment, 0.11 to 8.93.

Open-File Report↗

Total selenium and selenium species in irrigation drain inflows to the Salton Sea, California, October 2008 and January 2009

This report presents the results for two sampling periods (October 2008 and January 2009) during a 4-year monitoring program to characterize selenium concentrations in selected irrigation drains flowing into the Salton Sea, California. Total selenium, selenium species (dissolved selenite, selenate, organoselenium), and total suspended solids were determined in water samples. Total selenium also was determined in water column particulates and in sediment, detritus, and biota that included algae, plankton, midge larvae (family, Chironomidae), and two fish species (western mosquitofish, Gambusia affinis, and sailfin molly, Poecilia latipinna). In addition, sediments were analyzed for percent total organic carbon and particle size. Mean total selenium concentrations in water for both sampling periods ranged from 1.00 to 33.6 micrograms per liter, predominately as selenate, which is typical of waters where selenium is leached out of selenium-containing marine shales and associated soils under alkaline and oxidizing conditions. Total selenium concentrations (micrograms per gram dry weight) ranged as follows: algae, 1.52 to 8.26; plankton, 0.79 to 3.66; midges, 2.68 to 50.6; fish, 3.09 to 30.4; detritus, 1.78 to 58.0; and sediment, 0.42 to 10.0.

Open-File Report↗

Upper Clear Creek watershed aquatic chemistry and biota surveys, 2004-5, Whiskeytown National Recreation Area, Shasta County, California

The U.S. Geological Survey, in cooperation with the National Park Service and Whiskeytown National Recreation Area, performed a comprehensive aquatic biota survey of the upper Clear Creek watershed, Shasta County, California, during 2004-5. Data collected in this study can provide resource managers with information regarding aquatic resources, watershed degradation, and regional biodiversity within Whiskeytown National Recreation Area. Surveys of water chemistry, bed-sediment chemistry, algae assemblages, benthic macroinvertebrate assemblages, aquatic vertebrate assemblages, in-stream habitat characteristics, and sediment heterogeneity were conducted at 17 stream sites during both 2004 and 2005, with an additional 4 sites surveyed in 2005. A total of 67 bed-sediment samples were analyzed for major and trace inorganic element concentrations. Forty-six water samples were analyzed for trace metals and nutrients. A total of 224 taxa of invertebrates were collected during these surveys. Eleven fish species, seven of which were native, and two species of larval amphibians, were collected. A total of 24 genera of soft algae and 159 taxa of diatoms were identified. To date, this survey represents the most comprehensive inventory of aquatic resources within Whiskeytown National Recreation Area, and this information can serve as a baseline for future monitoring efforts and to inform management decisions.

California↗

Biotic, water-quality, and hydrologic metrics calculated for the analysis of temporal trends in National Water Quality Assessment Program Data in the Western United States

The U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program was established by Congress in 1991 to collect long-term, nationally consistent information on the quality of the Nation's streams and groundwater. The NAWQA Program utilizes interdisciplinary and dynamic studies that link the chemical and physical conditions of streams (such as flow and habitat) with ecosystem health and the biologic condition of algae, aquatic invertebrates, and fish communities. This report presents metrics derived from NAWQA data and the U.S. Geological Survey streamgaging network for sampling sites in the Western United States, as well as associated chemical, habitat, and streamflow properties. The metrics characterize the conditions of algae, aquatic invertebrates, and fish. In addition, we have compiled climate records and basin characteristics related to the NAWQA sampling sites. The calculated metrics and compiled data can be used to analyze ecohydrologic trends over time.

Open-File Report↗

Catalog of microscopic organisms of the Everglades, Part 1—The cyanobacteria

The microscopic organisms of the Everglades include numerous prokaryotic organisms, including the eubacteria, such as the cyanobacteria and non-photosynthetic bacteria, as well as several eukaryotic algae and protozoa that form the base of the food web. This report is part 1 in a series of reports that describe microscopic organisms encountered during the examination of several hundred samples collected in the southern Everglades. Part 1 describes the cyanobacteria and includes a suite of images and the most current taxonomic treatment of each taxon. The majority of the images are of live organisms, allowing their true color to be represented. A number of potential new species are illustrated; however, corroborating evidence from a genetic analysis of the morphological characteristics is needed to confirm these designations as new species. Part 1 also includes images of eubacteria that resemble cyanobacteria. Additional parts of the report on microscopic organisms of the Everglades are currently underway, such as the green algae and diatoms. The report also serves as the basis for a taxonomic image database that will provide a digital record of the Everglades microscopic flora and fauna. It is anticipated that these images will facilitate current and future ecological studies on the Everglades, such as understanding food-web dynamics, sediment formation and accumulation, the effects of nutrients and flow, and climate change.

Florida↗

Kelp forest monitoring at Naval Base Ventura County, San Nicolas Island, California—Fall 2019, sixth annual repor

The U.S. Geological Survey conducts ecological monitoring of rocky subtidal communities at four permanent sites around San Nicolas Island. The sites—Nav Fac 100, West End, Dutch Harbor, and Daytona 100—were based on ones that had been monitored since 1980 by the U.S. Geological Survey and, in cooperation with the U.S. Navy, were combined or expanded in 2014 for better comparability with monitoring programs conducted at the other California Channel Islands. At the sites, we counted a suite of kelps and invertebrates on benthic band transects, measured bottom cover of algae and sessile invertebrate species in quadrats, and counted and sized fish on swimming transects. Holdfast diameter and number of stipes of giant kelp ( Macrocystis pyrifera ) were recorded on these transects and size data were collected for urchins, sea stars, and shelled mollusks. Bottom temperatures were recorded at hourly intervals by archival data loggers that were deployed at the sites. Typically, this monitoring work is conducted semi-annually, in fall and spring. Because the spring 2020 trip was cancelled due to the Coronavirus Disease 2019 pandemic, this report focuses primarily on data collected in fall 2019 and makes comparisons with data collected in previous years, beginning in fall 2014. The sites are distributed around the island and differ in their physical and ecological characteristics. Nav Fac 100, situated on the north side of San Nicolas Island, has a relatively low benthic profile. The invasive brown alga Sargassum horneri was first observed at this site in 2015. West End, to the southwest of the island, also lacks much bottom relief but has more crevice habitat associated with boulders. For almost three decades, West End has been a focal point for the small, but growing, population of southern sea otters ( Enhydra lutris nereis ) at the island. Dutch Harbor, on the south side, has many high relief rocky reefs and had the greatest fish and non-motile invertebrate densities. Daytona 100, on the southeast side, has moderate relief and has remained a patchwork of kelp and sea urchin dominated areas. There were no major changes at the sites since spring 2019, but some trends observed during the last few years continued whereas others changed. Red urchins continued a declining trend (observed during the last 4 years) at Daytona 100. The wavy turban snail ( Megastraea undosa ) began to increase rapidly at Nav Fav 100 in 2015 and has subsequently been increasing at the other sites as well, after more than a decade of very low numbers at all sites. Sea star wasting syndrome, which has devastated multiple species of sea stars along the Pacific coast of North America, affected most species at San Nicolas Island in the year prior to the fall 2014 sampling. Since then, there has been a reduction in the number of bat stars ( Patiria miniata ), and very few sea stars of other species have been observed. There has been a slight recovery of P. miniata since 2016 but little sign of change in other species. All the sites had a slight decline in the densities of purple urchins following an increase during the previous 2 years. Long-term data are presented to illustrate trends and changes during almost four decades of monitoring this dynamic system.

Naval Base Ventura County, San Nicolas Island↗

Evaluation of the Bushy Park Reservoir three-dimensional hydrodynamic and water-quality model, South Carolina, 2012–15

The Bushy Park Reservoir is a relatively shallow impoundment in southeastern South Carolina. The reservoir, located under a semi-tropical climate, is the principal water supply for the city of Charleston, South Carolina, and the surrounding areas including the Bushy Park Industrial Complex. Although there was an adequate supply of freshwater in the reservoir in 2022, water-quality concerns are present over taste-and-odor and saltwater-intrusion issues. From 2013 to 2015, the U.S. Geological Survey (USGS), in cooperation with the Charleston Water System, engaged in a multi-year study of the hydrology and hydrodynamics of Bushy Park Reservoir to better understand factors affecting water-quality conditions in the reservoir. As part of this study, Charleston Water System worked with Tetra Tech, Inc., a consulting and engineering firm, to develop a Bushy Park Reservoir hydrodynamic and water-quality modeling framework, built upon earlier efforts by both Tetra Tech and the U.S. Army Corps of Engineers. At the completion of the new modeling framework, the USGS was requested to evaluate the calibrated hydrodynamic and water-quality model. The Bushy Park Reservoir Environmental Fluid Dynamics Code (EFDC) model was calibrated for the time period from January 1, 2012, to December 31, 2015. The general modeling approach for the newly revised modeling framework, as briefly detailed in this report, was developed with EFDC. The EFDC is a grid-based modeling package that can simulate three-dimensional flow, transport, and water quality in surface-water systems. This report evaluated the capacity of Tetra Tech’s Bushy Park EFDC model to simulate water discharge, water circulation, surface elevations, temperature, salinity, and other water-quality parameters. The USGS model review focused specifically on the following criteria: (1) determine if the model, with additional effort, could be developed into an adequate planning tool for Bushy Park Reservoir; (2) assess the capacity of the model to specifically address water-quality issues in the reservoir related to taste-and-odor and saltwater intrusions; and, (3) evaluate three preliminary water-management scenarios related to reduced water withdrawals in the reservoir and the effect on saltwater intrusion. Overall, the model was able to simulate discharge, flow velocity, and water-surface elevations with generally good agreement between the simulated and measured values. Specifically, the model was able to demonstrate good agreement for discharge at two USGS continuous discharge locations (USGS station 02172002; USGS station 02172040), with Wilmott index of agreements of 0.86 and 0.75, respectively. A total of seven USGS streamgages, located on the West Branch of the Cooper River, Durham Canal, and the Cooper River, were available for water-surface elevations, with index of agreements ranging from 0.74 to 0.99. However, model-simulated water-surface elevation ranges were appreciably high (compared to measured ranges) for two locations near Pinopolis Dam, farthest upstream on the West Branch of the Cooper River. This result may indicate that too much simulated tidal energy propagated through the model domain. For water temperature, 16 calibration stations were available for at least part of the 4-year simulation. The index of agreement range for temperature comparisons was from 0.95 to 1.00, indicating excellent agreement between the measured and simulated results. One of the primary future applications for the Bushy Park Reservoir EFDC model is to determine the extent of saltwater intrusions. A wide range in the salinity prediction quality was simulated with the model. The prediction quality ranged from an index of agreement of 0.15 at Cooper River approximately 2.75 miles southeast of the Tee, South Carolina, to 0.92 at West Branch Cooper River near Moncks Corner, South Carolina. Although the model did not accurately simulate some of the larger salinity deviations resulting during individual hydrologic events, the seasonal salinity trends were adequately simulated with the model during the study period (2012–15). Therefore, it may be difficult to simulate extreme hydrologic events, such as during large storms, where high salinity water is exchanged with Bushy Park Reservoir. There was agreement in model simulation with the measured data either on the quantitative index of agreement values or qualitative agreement in the seasonal salinity data trends. For water quality, the index of agreement values were generally low for total nitrogen, ammonia, nitrate, total Kjeldahl nitrogen, total phosphorus, and orthophosphate. Although general trends were adequately simulated at specific stations, particularly for Bushy Park Reservoir, the model-simulated fit was low across all the constituents described above with index of agreements usually below 0.50. A limitation for simulating nutrient concentrations across the model domain was the lack of characterization for the constituents directly entering Bushy Park Reservoir, or the lack of data directly attributed to the boundary condition (for example, the Cooper River). The other two calibrated water-quality constituents (besides the nutrients mentioned above) were dissolved oxygen and chlorophyll a . Dissolved oxygen varied from index of agreement values from 0.58 to 0.94 for 11 stations, generally indicating agreement with the available measured data. Chlorophyll a , calibrated for seven stations, had a wider range from 0.11 to 0.74 for the index of agreement. With the current modeling framework, taste-and-odor events, related to cyanobacterial blooms, cannot be directly simulated. However, indirect estimates of cyanobacteria concentrations may be obtained by using the chlorophyll a model outputs, which represent total phytoplankton biomass, and the phytoplankton biovolume data by group (diatoms, green algae, cyanobacteria and others) collected from 2012 to 2015. For the Bushy Park Reservoir modeling framework to be used directly for taste-and-odor issues, cyanobacteria must be simulated and calibrated based on observations of cyanobacteria biomass concentrations. In addition to the cyanobacteria sampling conducted within the reservoir between 2012 and 2015, the new model calibration would also require new algae biomass data-collection efforts to characterize the external sources of cyanobacteria entering the Bushy Park Reservoir from tributaries, as well as the internal cycling, production, and decay of cyanobacteria in the hydrologic system. Further improvements to the EFDC model would include expanding the collection of boundary condition datasets, such as water-quality monitoring to determine improved nutrient loads into the model domain. Along with improved water-quality monitoring for the major boundary conditions, continuous discharge, for both Foster Creek and the Back River, would further constrain the flow balance and the loads into Bushy Park Reservoir. In addition to better boundary-condition characterization, it is important to better characterize possible shortcomings specifically to the model domain, such as the grid resolution, bathymetry, and numerical hydrodynamic errors. Further consideration of the model may involve a sensitivity analysis to determine if errors in the simulation outputs, such as discharge, water-surface elevations, and salinity, were more likely caused by poor boundary condition characterization or, specifically, the model setup. Three model scenarios were run with the revised Bushy Park Reservoir model: (1) reduced withdrawals from one of the large intake-discharge locations for Bushy Park Reservoir, the Williams Station; (2) elevated (above background levels) ocean water level causing saltwater intrusion from the ocean through Durham Canal into Bushy Park Reservoir; and (3) overtopping of the Back River Dam at the southernmost end of Bushy Park Reservoir. For the reduced withdrawals scenarios, the largest shift in flow resulted near the Williams Station intake, with the next largest flow change at the southern end of Bushy Park Reservoir, and a net increase in flow out of the Bushy Park Reservoir to the Cooper River by way of the Durham Canal. The effect resulting from scenario 3 on water quality and salinity was small, with larger increases for dissolved oxygen than other constituents at several monitoring stations. For the two scenarios related to saltwater intrusion (including dam overtopping), the changes in salinity generally were found to dissipate in the following 2 weeks and generally back to baseline salinity conditions within 3 months. This result did vary depending on the severity of the storm or length of the dam overtopping event.

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