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At least 271 records · Page 15Linked to original sources

USGS2006

The western pond turtle (Clemmys marmorata) in the Mojave River, California, USA: Highly adapted survivor or tenuous relict?

Aspects of the ecology of populations of the western pond turtle Clemmys marmorata were investigated in the Mojave River of the central Mojave Desert, California, U.S.A. One population occupied man-made ponds and the other occurred in natural ponds in the flood plain of the Mojave River. Both habitats are severely degraded as a result of ground water depletion from human activities along the river and one is infested with the exotic shrub saltcedar Tamarix ramosissima . Mean female carapace length (CL) was significantly greater (14.4 cm) than that of males (13.7 cm). Live juveniles were not detected during the period of study. Shelled eggs were visible in X-radiographs from 26 May to 14 July. Mean clutch size was 4.46 and ranged from 3 to 6 eggs. Clutch size did not vary between 1998 and 1999 but was significantly correlated with CL for both years combined, increasing at the rate of 0.548 eggs/cm CL. Gravid female CL ranged from 13.3–16.0 cm. Some females nested in both years. Mean X-ray egg width (21.8 mm) was not significantly correlated with CL or clutch size. X-ray egg width differed more among clutches than within, whether including CL as a co-variate or not. Nesting migrations occurred from 6 June to 8 July with minimum round trip distances ranging from 17.5–585 m with a mean of 195 m. Mean estimated time of departure as measured at the drift fence was 18:13. Most females returned to the ponds in the early morning. Nesting migrations required females to be out of the water for estimated periods of 0.83 to 86 h. The destination of nesting females was typically fluvial sand bars in the channel of the dry riverbed. Overall, the ecology of C. marmorata in the Mojave River is very similar to that reported for populations in less severe habitats along the west coast of the United States. Notable exceptions include long nesting migrations to sandbars in the dry river channel, a possible result of human modifications to the environment, and an apparent lack of terrestrial overwintering behaviour in Mojave River populations. The general similarity of desert and coastal populations is possibly a reflection of their recent geographic separation. Overall, populations in the Mojave River exhibit few obvious adaptations to living in the desert and are considered to be tenuous relicts of the Pleistocene. The small size and tenuous status of these populations suggests that immediate conservation action is needed, including establishment of satellite populations as a hedge against extirpation.

California↗

USGS2008

Rainfall effects on rare annual plants

Variation in climate is predicted to increase over much of the planet this century. Forecasting species persistence with climate change thus requires understanding of how populations respond to climate variability, and the mechanisms underlying this response. Variable rainfall is well known to drive fluctuations in annual plant populations, yet the degree to which population response is driven by between-year variation in germination cueing, water limitation or competitive suppression is poorly understood. We used demographic monitoring and population models to examine how three seed banking, rare annual plants of the California Channel Islands respond to natural variation in precipitation and their competitive environments. Island plants are particularly threatened by climate change because their current ranges are unlikely to overlap regions that are climatically favourable in the future. Species showed 9 to 100-fold between-year variation in plant density over the 5–12 years of censusing, including a severe drought and a wet El Niño year. During the drought, population sizes were low for all species. However, even in non-drought years, population sizes and per capita growth rates showed considerable temporal variation, variation that was uncorrelated with total rainfall. These population fluctuations were instead correlated with the temperature after the first major storm event of the season, a germination cue for annual plants. Temporal variation in the density of the focal species was uncorrelated with the total vegetative cover in the surrounding community, suggesting that variation in competitive environments does not strongly determine population fluctuations. At the same time, the uncorrelated responses of the focal species and their competitors to environmental variation may favour persistence via the storage effect. Population growth rate analyses suggested differential endangerment of the focal annuals. Elasticity analyses and life table response experiments indicated that variation in germination has the same potential as the seeds produced per germinant to drive variation in population growth rates, but only the former was clearly related to rainfall. Synthesis . Our work suggests that future changes in the timing and temperatures associated with the first major rains, acting through germination, may more strongly affect population persistence than changes in season-long rainfall.

Journal of Ecology↗

USGS2018

Population history provides foundational knowledge for utilizing and developing native plant restoration materials

A species’ population structure and history are critical pieces of information that can help guide the use of available native plant materials in restoration treatments and decide what new native plant materials should be developed to meet future restoration needs. In the western United States, Pseudoroegneria spicata (bluebunch wheatgrass; Poaceae) is an important component of grassland and shrubland plant communities and commonly used for restoration due to its drought resistance and competitiveness with exotic weeds. We used next‐generation sequencing data to investigate the processes that shaped P. spicata 's geographic pattern of genetic variation across the Intermountain West. Pseudoroegneria spicata 's genetic diversity is partitioned into populations that likely differentiated since the Last Glacial Maximum. Adjacent populations display varying magnitudes of historical gene flow, with migration rates ranging from multiple migrants per generation to multiple generations per migrant. When considering the commercial germplasm sources available for restoration, genetic identities remain representative of the wildland localities from which germplasm sources were originally developed, and they maintain high levels of heterozygosity and nucleotide diversity. However, the commercial germplasm sources represent a small fraction of the overall genetic diversity of P. spicata in the Intermountain West. Given the low migration rates and long divergence times between some pairs of P. spicata populations, using commercial germplasm sources could facilitate undesirable restoration outcomes when used in certain geographic areas, even if the environment in which the commercial materials thrive is similar to that of the restoration site. As such, population structure and history can be used to provide guidance on what geographic areas may need additional native plant materials so that restoration efforts support species and community resilience and improve outcomes.

Evolutionary Applications↗

USGS2016

California State Waters Map Series — Offshore of Monterey, California

Introduction In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath bathymetry data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow subsurface geology. The Offshore of Monterey map area in central California is located on the Pacific Coast, about 120 km south of San Francisco. Incorporated cities in the map area include Seaside, Monterey, Marina, Pacific Grove, Carmel-by-the-Sea, and Sand City. The local economy receives significant resources from tourism, as well as from the Federal Government. Tourist attractions include the Monterey Bay Aquarium, Cannery Row, Fisherman’s Wharf, and the many golf courses near Pebble Beach, and the area serves as a gateway to the spectacular scenery and outdoor activities along the Big Sur coast to the south. Federal facilities include the Army’s Defense Language Institute, the Naval Postgraduate School, and the Fleet Numerical Meteorology and Oceanography Center (operated by the Navy). In 1994, Fort Ord army base, located between Seaside and Marina, was closed; much of former army base land now makes up the Fort Ord National Monument, managed by the U.S. Bureau of Land Management as part of the National Landscape Conservation System. In addition, part of the old Fort Ord is now occupied by California State University, Monterey Bay. The offshore part of the map area lies entirely within the Monterey Bay National Marine Sanctuary, one of the nation’s largest marine sanctuaries. State beaches and parks within the map area include Fort Ord Dunes State Park and the Marina, Monterey, and Asilomar State Beaches, as well as Carmel River State Beach, which includes the Carmel River Lagoon and Wetland Natural Preserve. The map area also includes all or part of several State Marine Protected Areas, including the Carmel Pinnacles, Asilomar, and Lovers Point–Julia Platt State Marine Reserves, as well as the Carmel Bay, Pacific Grove Marine Gardens, Edward F. Ricketts, and Portuguese Ledge State Marine Conservation Areas. The coastal zone in the map area is characterized by two distinct physiographies. From Marina to Monterey, sandy beaches are backed by a belt of sand dunes, as much as 30 to 40 m high and as wide as 8 km. The Salinas River supplies the sand for the beaches and dunes. Nearshore sediment transport is primarily to the south, in the southern Monterey littoral cell. Along the Monterey peninsula, which lies at the north end of the rugged Santa Lucia Range, coastal relief is very different. The peninsula is characterized largely by low marine terraces that formed mostly on hard and relatively stable granitic bedrock. Carmel Beach in Carmel-by-the-Sea is the longest continuous beach in this area; bedrock points and small pocket beaches characterize most of the rest of the peninsula. The Carmel River littoral cell extends along the coast from Point Pinos to Point Lobos (just south of the map area), including Carmel Beach; sediment transport is primarily to the south. The granitic rocks that crop out so prominently along the Monterey peninsula make up part of the Salinian block, a crustal terrane that in this area lies west of the San Andreas Fault and east of the San Gregorio Fault. The strike-slip San Andreas Fault Zone, which lies just 26 km east of the map area, is the most important structure within the Pacific–North American transform plate boundary. The San Gregorio Fault, a secondary fault within the distributed plate boundary, cuts through (and is roughly aligned with) Carmel Canyon, a submarine canyon in the southwest corner of the map area that is part of the Monterey Canyon system. The San Gregorio Fault Zone is part of a fault system that is present predominantly in the offshore for about 400 km, from Point Conception in the south (where it is known as the Hosgri Fault) to Bolinas and Point Reyes in the north. The offshore part of the map area primarily consists of relatively flat continental shelf, bounded on the west by the steep flanks of Carmel Canyon. Shelf width varies from 2 to 3 km in the southern part of the map area, near the mouth of Carmel Canyon, to 14 km in Monterey Bay. Bedrock beneath the shelf is overlain in many areas by variable amounts (0 to 16 m) of upper Quaternary shelf and nearshore sediments deposited as sea level fluctuated in the late Pleistocene. “Soft-induration,” unconsolidated sediment is the dominant (about 63 percent) habitat type on the continental shelf, followed by “hard-induration” rock and boulders (about 34 percent) and “mixed-induration” substrate (about 3 percent). At water depths of about 100 to 130 m, the shelf break approximates the shoreline during the sea-level lowstand of the Last Glacial Maximum, about 21,000 years ago. Carmel Canyon and other parts of the Monterey Canyon system in the map area extend from the shelf break to water depths that reach 1,600 m. Most of the extensive incision of the shelf break and canyon flanks probably occurred during repeated Quaternary sea-level lowstands. The relatively straight floor of Carmel Canyon notably is aligned with the San Gregorio Fault Zone. Mixed hard-soft substrate is the most common (about 51 percent) habitat type in Carmel Canyon; hard bedrock and soft, unconsolidated sediment cover about 40 percent and 9 percent of canyon habitat, respectively. This part of the central California coast is exposed to large North Pacific swells from the northwest throughout the year. Wave heights range from 2 to 10 m, the larger swells occurring from October to May. During El Niño–Southern Oscillation (ENSO) events, winter storms track farther south than they do in normal (non-ENSO) years, thereby impacting the map area more frequently and with waves of larger heights. Benthic species observed in the map area are natives of the cold-temperate biogeographic zone that is called either the “Oregonian province” or the “northern California ecoregion.” This biogeographic province is maintained by the long-term stability of the southward-flowing California Current, the eastern limb of the North Pacific subtropical gyre that flows from southern British Columbia to Baja California. Biological productivity resulting from coastal upwelling supports populations of Sooty Shearwater, Western Gull, Common Murre, Cassin’s Auklet, and many other less populous bird species. An observable recovery of Humpback and Blue Whales has occurred in the area; both species are dependent on coastal upwelling to provide nutrients. The large extent of exposed inner shelf bedrock supports large forests of “bull kelp,” which is well adapted for high-wave-energy environments. The kelp beds are well-known habitat for the population of southern sea otters. Common fish species found in the kelp beds and rocky reefs include lingcod and various species of rockfish and greenling.

California↗

USGS2011

Salinity tolerance of non-native suckermouth armoured catfish (Loricariidae: Pterygoplichthys) in south-eastern Mexico: Implications for invasion and dispersal

1. Salinity tolerance is one of several important physiological attributes that determine invasion success and the pattern of dispersal of introduced aquatic organisms. Introduced freshwater fishes able to tolerate elevated salinities have the potential to invade and exploit brackish-water (mixohaline) environments and use estuaries and coastal waters as 'bridges' for dispersing from one coastal river system to another. 2. Several members of the neotropical suckermouth armoured catfish genus Pterygoplichthys (Siluriformes: Loricariidae) have established non-native populations in inland waters of North and Central America, Asia and islands in the Caribbean, and Pacific and Indian oceans. Loricariids are generally considered to be strictly freshwater; but a few naturally occur in mesohaline habitats. 3. Catch and habitat data from 2004–2005 and 2009–2011 fish surveys in the Grijalva–Usumacinta River delta region (south-eastern Mexico) confirmed that introduced Pterygoplichthys populations established in upstream freshwater sites (where these catfish are abundant) have recently dispersed into downstream oligohaline and mesohaline estuarine habitats. During 2009–2011 surveys, these non-native catfish — tentatively identified as P. pardalis or its hybrids — were found in sites with salinities ranging from 1 to 8 ppt (mean 5.2 ppt). 4. Acute-salinity experiments were conducted with Pterygoplichthys (110–302 mm standard length, N =140) captured in the Grijalva–Usumacinta Basin to determine upper salinity tolerance levels. Tests demonstrated that individuals maintained in salinities of 0.2 ppt were able to survive abrupt (acute) exposure to salinities up to 10 ppt with little mortality over 10 days (240 h experimental endpoint). A few individuals survived abrupt exposure to 11 and 12 ppt for 20 or more hours, although none survived more than a few hours at 16 ppt or greater. 5. These field and experimental results provide quantitative evidence that non-native Pterygoplichthys are physiologically capable of surviving mesohaline conditions for extended periods and that non-native populations in Mexico are invading and presumably exploiting estuarine and other coastal environments, perhaps as feeding areas and potentially as dispersal routes.

Grijalva–Usumacinta River delta↗

USGS2020

Ontogenetic diet shifts with potential ramifications for resource competition in a kokanee – Mysis diluviana system

Ontogenetic shifts represent important transitions that can influence how fish interact with their environment. However, ontogenetic shifts are rarely placed into a population context due to the difficulty of incorporating the vagaries of size-mediated interactions. As such, we evaluated the role of ontogenetic shifts in diet as they relate to potential competitive interactions between kokanee Oncorhynchus nerka and Opossum Shrimp Mysis diluviana (hereafter Mysis) in Lake Pend Oreille, Idaho. Contemporary data were used to understand diet patterns of Mysis and kokanee. Historical data were evaluated within the context of ontogenetic shifts to better understand the long-term, population-level ramifications of interactions between Mysis and kokanee. Diet analysis revealed age-specific divergences in diet whereby juvenile kokanee primarily consumed copepods and adult kokanee preferentially consumed cladocerans. When placed in a historical context, age-specific patterns in kokanee diet likely led to increases in adult growth following declines in Mysis abundance. Improved fitness of adult fish likely resulted in record high abundances of kokanee in Lake Pend Oreille thereby shifting the balance from inter- to intraspecific competition.

Idaho↗

USGS2011

Environmental endocrinology of salmon smoltification

Smolting is a hormone-driven developmental process that is adaptive for downstream migration and ocean survival and growth in anadromous salmonids . Smolting includes increased salinity tolerance, increased metabolism, downstream migratory and schooling behavior, silvering and darkened fin margins, and olfactory imprinting. These changes are promoted by growth hormone, insulin-like growth factor I, cortisol , thyroid hormones, whereas prolactin is inhibitory. Photoperiod and temperature are critical environmental cues for smolt development, and their relative importance will be critical in determining responses to future climate change. Most of our knowledge of the environmental control and endocrine mediation of smolting is based on laboratory and hatchery studies, yet there is emerging information on fish in the wild that indicates substantial differences. Such differences may arise from differences in environmental stimuli in artificial rearing environments, and may be critical to ocean survival and population sustainability. Endocrine disruptors, acidification and other contaminants can perturb smolt development, resulting in poor survival after seawater entry.

General and Comparative Endocrinology↗

USGS2003

Seismic design provisions and guidelines in the United States: A prologue

Seismic design provisions and guidelines are the basis for reduction of potentially devastating losses of life and property from earthquakes. Six tragic earthquakes since 1985, affecting Mexico, Armenia, the United States, Japan, Turkey, and Taiwan, caused combined property losses exceeding $320 billion and loss of lives exceeding 143,900. These losses emphasize the need to improve the earthquake resistance of the built environment in zones of high seismic risk. With present population exceeding 290 million in major earthquake zones and world population expected to increase by 2 to 4 billion people in the next 50 years, losses from future earthquakes can be expected to reach even greater levels if worldwide improvements in earthquake resistance are not made.

International Geophysics↗

USGS2010

Legacy of the California Gold Rush: Environmental geochemistry of arsenic in the southern Mother Lode Gold District

Gold mining activity in the Sierra Nevada foothills, both recently and during the California Gold Rush, has exposed arsenic-rich pyritic rocks to weathering and erosion. This study describes arsenic concentration and speciation in three hydrogeologic settings in the southern Mother Lode Gold District: mineralized outcrops and mine waste rock (overburden); mill tailings submerged in a water reservoir; and lake waters in this monomictic reservoir and in a monomictic lake developing within a recent open-pit mine. These environments are characterized by distinct modes of rock-water interaction that influence the local transport and fate of arsenic. Arsenic in outcrops and waste rock occurs in arsenian pyrite containing an average of 2 wt% arsenic. Arsenic is concentrated up to 1300 ppm in fine-grained, friable, iron-rich weathering products of the arsenian pyrite (goethite, jarosite, copiapite), which develop as efflorescences and crusts on weathering outcrops. Arsenic is sorbed as a bidentate complex on goethite, and substitutes for sulfate in jarosite. Submerged mill tailings obtained by gravity core at Don Pedro Reservoir contain arsenic up to 300 ppm in coarse sand layers. Overlying surface muds have less arsenic in the solid fraction but higher concentrations in porewaters (up to 500 μg/L) than the sands. Fine quartz tailings also contain up to 3.5 ppm mercury related to the ore processing. The pH values in sediment porewaters range from 3.7 in buried gypsum-bearing sands and tailings to 7 in the overlying lake sediments. Reservoir waters immediately above the cores contain up to 3.5 μg/L arsenic; lake waters away from the submerged tailings typically contain less than 1 μg/L arsenic. Dewatering during excavation of the Harvard open-pit mine produced a hydrologic cone of depression that has been recovering toward the pre-mining groundwater configuration since mining ended in 1994. Aqueous arsenic concentrations in the 80 m deep pit lake are up to 1000 μg/L. Redistribution of the arsenic occurs during summer stratification, with highest concentrations at middle depths. The total mass of arsenic in the pit lake increases coinciding with early winter rains that erode, partially dissolve, and transport arsenic-bearing salts into the pit lake. Arsenic concentration, speciation, and distribution in the Sierra Nevada foothills depend on many factors, including the lithologic sources of arsenic, climatic influences on weathering of host minerals, and geochemical characteristics of waters with which source and secondary minerals react. Oxidation of arsenian pyrite to goethite, jarosite, and copiapite causes temporary attenuation of arsenic during summer, when these secondary minerals accumulate; subsequent rapid dissemination of arsenic into the aqueous environment is caused by annual winter storms. As the population of the Mother Lode area grows, it is increasingly important to consider these effects during planning and development of land and groundwater resources.

California↗

USGS2008

Habitat, topographical, and geographical components structuring shrubsteppe bird communities

Landscapes available to birds to select for breeding locations are arrayed along multiple dimensions. Identifying the primary gradients structuring shrubsteppe bird communities in the western United States is important because widespread habitat loss and alteration are shifting the environmental template on which these birds depend. We integrated field habitat surveys, GIS coverages, and bird counts from 61 Breeding Bird Survey routes located in shrubsteppe habitats across a >800 000 km2 region to determine the gradients of habitat, topography, and geography underlying bird communities. A small set of habitat features dominated the primary environmental gradients in a canonical ordination; the 13 species in the shrubsteppe bird community were closely packed along the first two axes. Using hierarchical variance partitioning, we identified habitat as the most important pure (31% explained variation) or shared component. Topography (9%) and geography (4%) were minor components but each shared a larger contribution with habitat (habitat-topography 21%; habitat-geography 22%) in explaining the organization of the bird community. In a second tier partition of habitat structure, pure composition (% land cover) was more important (45%) than configuration (patch size and edge) (7%); the two components shared 27% of the explained variation in the bird community axes. Local (9%), community (14%), and landscape (10%) levels contributed equally. Adjacent organizational levels had a larger shared contribution (local-community 26%; community-landscape 27%) than more separated local-landscape levels (21%). Extensive conversion of shrubsteppe habitats to agriculture, exotic annual grasslands, or pinyon (Pinus spp.)-juniper (Juniperus spp.) woodlands is occurring along the primary axes of habitat structure. Because the shrubsteppe bird community was organized along short gradients dominated by habitat features, relatively small shifts in their available environment will exert a strong influence on these bird populations in the absence of buffering by alternative gradients. ?? 2008 The Authors.

Ecography↗

USGS2016

Metapopulation viability of an endangered shorebird depends on dispersal and human-created habitats: Piping plovers ( Charadrius melodus ) and prairie rivers

Background Many species are distributed as metapopulations in dynamic landscapes, where habitats change through space and time. Individuals locate habitat through dispersal, and the relationship between a species and landscape characteristics can have profound effects on population persistence. Despite the importance of connectivity in dynamic environments, few empirical studies have examined temporal variability in dispersal or its effect on metapopulation dynamics. In response to this knowledge gap, we studied the dispersal, demography, and viability of a metapopulation of an endangered, disturbance-dependent shorebird. We examined three subpopulations of piping plovers ( Charadrius melodus ) on the lower Platte and Missouri rivers from 2008–2013. High flow events from an upstream dam on the Missouri River in 2010 and 2011 allowed us to assess the effect of total habitat loss and the subsequent creation of new habitat associated with a large disturbance at one ‘natural’ study location. The other two sites within the metapopulation, which were maintained by anthropogenic activities (e.g., mining, development, habitat restoration), were largely unaffected by this disturbance, resulting in a controlled natural experiment. Results High flow events were associated with increased emigration, decreased immigration, and decreased survival in the subpopulation that experienced high flows. Following the high flow event, immigration into that subpopulation increased. Dispersal rates among subpopulations were negatively correlated with distance. The metapopulation had a low probability of extinction over 100 years (0%) under the current disturbance interval and associated dispersal and survival rates. However, persistence depended on relatively stable, human-created habitats, not the dynamic, natural habitat (47.7 % extinction probability for this subpopulation). Conclusions We found that functional connectivity, as measured by the rate of dispersal among subpopulations, increased as a result of the high flow event in our study metapopulation. Plovers also increased reproductive output following this event. Although the study metapopulation had a low overall probability of extinction, metapopulation persistence depended on anthropogenically created habitats that provided a small but stable source of nesting habitat and dispersers through time. However, all subpopulations remained small, even if persistent, making them individually vulnerable to extinction through stochastic events. Given the highly dynamic nature of habitat availability in this system, maintaining several subpopulations within the metapopulation and stable sources of habitat will be critical, and this species will likely remain conservation-reliant.

Nebraska↗

USGS2008

Fate and transport of pesticides in the ground water systems of southwest Georgia, 1993-2005

Modern agricultural practices in the United States have resulted in nearly unrivaled efficiency and productivity. Unfortunately, there is also the potential for release of these compounds to the environment and consequent adverse affects on wildlife and human populations. Since 1993, the National Water-Quality Assessment (NAWQA) program of the U.S. Geological Survey has evaluated water quality in agricultural areas to address these concerns. The objective of this study is to evaluate trends in pesticide concentrations from 1993-2005 in the surficial and Upper Floridan aquifers of southwest Georgia using pesticide and pesticide degradate data collected for the NAWQA program. There were six compounds - five herbicides and one degradate - that were detected in more than 20% of samples: atrazine, deethylatrazine (DEA), metolachlor, alachlor, floumeturon, and tebuthiuron. Of the 128 wells sampled during the study, only eight wells had pesticide concentrations that either increased (7) or decreased (1) on a decadal time scale. Most of the significant trends were increasing concentrations of pesticides in older water; median pesticide concentrations did not differ between the surficial and Upper Floridan aquifers from 1993 and 2005. Deethylatrazine, in the Upper Floridan aquifer, was the only compound that had a significant change (increase) in concentration during the study. The limited number of wells with increases in pesticide concentrations suggest that ground-water sources of these compounds are not increasing in concentration over the time scale represented in this study. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Conference Paper↗

USGS1995

Geologic map of the Littlefield Quadrangle, northern Mohave County, Arizona

The Littlefield 7.5' quadrangle lies in the extreme northwestern corner of Mohave County, Arizona (fig. 1). Elevations range from about 536.5 m (1,760 ft) at the Virgin River (south-central edge of quadrangle) to 975 m (3,200 ft) in the Beaver Dam Mountains (northeastern corner of quadrangle). Interstate Arizona Highway 15 and U.S. Highway 91 provides a general access to the quadrangle while several unimproved dirt roads lead to remote areas of the quadrangle. The community of Littlefield, Arizona is just southeast of Interstate 15 along the west bank of the Virgin River, and the community of Beaver Dam, Arizona is just northwest of Interstate 15 in the valley of Beaver Dam Wash (fig. 1). Population of both communities is about 300 people. The environment, topography, and geography is typical of the Mohave Desert of Nevada and California. There are about 9 sections of private land in the quadrangle and 5 sections belonging to the state of Arizona. The balance is public land administrated by the U.S. Bureau of Land Management, Arizona Strip District in St. George, Utah. The area supports sparse growth of desert shrubs, mainly creosote bush and cactus. Dense growths of tamerisk (Salt Cedar), cottonwood, and willow trees thrive along the alluvial terraces and banks of the Virgin River. A variety of water loving plants thrive in warm spring waters on the east side of the Virgin River near the Interstate 15 bridge, and in Beaver Dam Wash, northwest corner of the quadrangle.

Arizona↗

USGS2012

Immunity to fish rhabdoviruses

Members of the family Rhabdoviridae are single-stranded RNA viruses and globally important pathogens of wild and cultured fish and thus relatively well studied in their respective hosts or other model systems. Here, we review the protective immune mechanisms that fish mount in response to rhabdovirus infections. Teleost fish possess the principal components of innate and adaptive immunity found in other vertebrates. Neutralizing antibodies are critical for long-term protection from fish rhabdoviruses, but several studies also indicate a role for cell-mediated immunity. Survival of acute rhabdoviral infection is also dependent on innate immunity, particularly the interferon (IFN) system that is rapidly induced in response to infection. Paradoxically, rhabdoviruses are sensitive to the effects of IFN but virulent rhabdoviruses can continue to replicate owing to the abilities of the matrix (M) protein to mediate host-cell shutoff and the non-virion (NV) protein to subvert programmed cell death and suppress functional IFN. While many basic features of the fish immune response to rhabdovirus infections are becoming better understood, much less is known about how factors in the environment affect the ecology of rhabdovirus infections in natural populations of aquatic animals.

Viruses↗

USGS2021

Soil reservoir dynamics of ophidiomyces ophidiicola, the causative agent of snake fungal disease

Wildlife diseases pose an ever-growing threat to global biodiversity. Understanding how wildlife pathogens are distributed in the environment and the ability of pathogens to form environmental reservoirs is critical to understanding and predicting disease dynamics within host populations. Snake fungal disease (SFD) is an emerging conservation threat to North American snake populations. The causative agent, Ophidiomyces ophidiicola (Oo), is detectable in environmentally derived soils. However, little is known about the distribution of Oo in the environment and the persistence and growth of Oo in soils. Here, we use quantitative PCR to detect Oo in soil samples collected from five snake dens. We compare the detection rates between soils collected from within underground snake hibernacula and associated, adjacent topsoil samples. Additionally, we used microcosm growth assays to assess the growth of Oo in soils and investigate whether the detection and growth of Oo are related to abiotic parameters and microbial communities of soil samples. We found that Oo is significantly more likely to be detected in hibernaculum soils compared to topsoils. We also found that Oo was capable of growth in sterile soil, but no growth occurred in soils with an active microbial community. A number of fungal genera were more abundant in soils that did not permit growth of Oo, versus those that did. Our results suggest that soils may display a high degree of both general and specific suppression of Oo in the environment. Harnessing environmental suppression presents opportunities to mitigate the impacts of SFD in wild snake populations.

Journal of Fungi↗

USGS2008

Influence of habitat amount, arrangement, and use on population trend estimates of male Kirtland's warblers

Kirtland's warblers (Dendroica kirtlandii) persist in a naturally patchy environment of young, regenerating jack pine forests (i.e., 5-23 years old) created after wildfires and human logging activities. We examined how changing landscape structure from 26 years of forest management and wildfire disturbances influenced population size and spatial dispersion of male Kirtland's warblers within their restricted breeding range in northern Lower Michigan, USA. The male Kirtland's warbler population was six times larger in 2004 (1,322) compared to 1979 (205); the change was nonlinear with 1987 and 1994 identified as significant points of change. In 1987, the population trend began increasing after a slowly declining trend prior to 1987, and the rate of increase appeared to slow after 1994. Total amount of suitable habitat and the relative area of wildfire-regenerated habitat were the most important factors explaining population trend. Suitable habitat increased 149% primarily due to increasing plantations from forest management. The relative amount and location of wildfire-regenerated habitat modified the distribution of males among various habitat types, and the spatial variation in their abundance across the primary breeding range. These findings indicate that the Kirtland's warbler male population shifted its use of habitat types temporally and spatially as the population increased and as the relative availability of habitats changed through time. We demonstrate that researchers and managers need to consider not only habitat quality, but the temporal and the spatial context of habitat availability and population levels when making habitat restoration decisions. ?? 2008 Springer Science+Business Media B.V.

Landscape Ecology↗

USGS2011

No population genetic structure in a widespread aquatic songbird from the Neotropics

Neotropical lowland organisms often show marked population genetic structure, suggesting restricted migration among populations. However, most phylogeographic studies have focused on species inhabiting humid forest interior. Little attention has been devoted to the study of species with ecologies conducive to dispersal, such as those of more open and variable environments associated with watercourses. Using mtDNA sequences, we examined patterns of genetic variation in a widely distributed Neotropical songbird of aquatic environments, the Yellow-hooded Blackbird (Icteridae, Chrysomus icterocephalus ). In contrast to many forest species, Yellow-hooded Blackbirds showed no detectable genetic structure across their range, which includes lowland populations on both sides of the Andes, much of northeastern South America, Amazonia, as well as a phenotypically distinct highland population in Colombia. A coalescent-based analysis of the species indicated that its effective population size has increased considerably, suggesting a range expansion. Our results support the hypothesis that species occurring in open habitats and tracking temporally dynamic environments should show increased dispersal propensities (hence gene flow) relative to species from closed and more stable environments. The phenotypic and behavioral variation among populations of our study species appears to have arisen recently and perhaps in the face of gene flow.

Molecular Phylogenetics and Evolution↗

USGS2022

What common-garden experiments tell us about climate responses in plants

Common garden experiments are indoor or outdoor plantings of species or populations collected from multiple distinct geographic locations, grown together under shared conditions. These experiments examine a range of questions for theory and application using a variety of methods for analysis. The eight papers of this special feature comprise a cross section of contemporary approaches, summarized and synthesized here by what they tell us about the relationships between climate-related trait spectra and fitness optima. Four of the eight papers are based on field experiments in prairie, desert, Mediterranean and boreal biomes. Representative of many common garden experiments, these experiments reveal consistent evidence of traits varying with population climate provenance, but evidence of a tradeoff between growth and tolerance traits or of consistent fitness optimization at home is scant, in contrast to trait theory. Two synthesis papers highlight dominant patterns of trait divergence, including for an exotic invasive species. One theoretical paper warned that unknown kinship relationships between populations can result in the misidentification of adaptive trait divergence. A third synthesis paper formulated novel and ambitious goals for common-garden studies through including measurement of response variables at multiple levels of biological organization. The featured papers discuss multiple avenues for improving common garden studies. Genomic analysis, together with the quantification of kinship relationships, will continue to reveal the influence of environmental drivers on gene selection. Measuring a more complete set of fitness traits, especially for traits related to regeneration, will permit the development of projection models to explicitly link trait spectra, climate patterns and fitness consequences. More standardized data reporting will additionally improve abilities to synthesize findings across experiments. Testing population performance in competition with other species will produce more robust fitness comparisons between genotypes, especially for slower-growing genotypes in higher-resource environments. Adding gardens in and beyond climatic edge locations will furthermore strengthen the understanding of population failure and species exclusion. Finally, there is unrealized potential in adding ecosystem-level observations to common-garden studies that will enhance integrative analysis across scales of biological organization and scientific domains. Synthesis . With novel, creative designs, data integration and synthesis, common garden experiments will continue to advance the understanding of trait ensembles interacting with climate across scales of biological organization, provide pivotal data for global change models and guide ecological applications such as restoration of habitats for rare and climate sensitive species.

Journal of Ecology↗