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Challenge theme 4: People in the Borderlands: Chapter 6 in United States-Mexican Borderlands: Facing tomorrow's challenges through USGS science

The management of shared resources in the United States–Mexican border region requires cooperation from the people of both countries to assess and understand their relation to the environment. Society is dependent on the long-term healthy functioning of ecosystems and their ability to supply food and raw materials. Likewise, resources and services obtained from nature could be used efficiently within the society. A more equitable distribution of costs and benefits related to goods and services can lead to fewer tensions and a higher quality of life for all the people in the Borderlands. Urban development, background contamination from mineral ore deposits, irrigation, sewage effluent, and even global climate change all have the potential to alter the stability of the fragile systems in the Borderlands (Brady and others, 2001, 2002; Norman, 2007, 2010; Gu and others, 2008; Norman, Gray, and others, 2008; Norman, Hirsch, and Ward, 2008; Norman, Callegary, and others, 2010; Norman, Huth, and others, 2010; Norman, Levick, and others, 2010; Norman, Tallent-Halsell, and others, 2010; Norman, Villarreal, and others 2012). Social efficiency means that because resources should be used where they are needed most, they should be distributed proportionally among human societies and individuals (Azar and others, 1996). Despite the critical role natural resources play in maintaining human and environmental health, current knowledge of the manner in which natural and human-caused forces interact to limit these resources—including their quality and quantity (such as through spatiotemporal changes in precipitation, evapotranspiration, pumping of groundwater, and release of contaminants)—is inadequate. The U.S. Geological Survey (USGS) is trying to understand the relation between changing landscapes, changing demographics, and a changing climate in the Borderlands while the environmental, economic, and societal issues continue to be intertwined between the two nations.

United States-Mexico Borderlands

Prediction of the probability of elevated nitrate concentrations at groundwater depths used for drinking-water supply in the Puget Sound basin, Washington, 2004–19

The Puget Sound basin encompasses the 13,700-square-mile area that drains to the Puget Sound and the adjacent marine waters of Washington State. Well more than 4 million people live within the basin, with numbers continuing to increase, who rely on the basin’s natural resources including groundwater. The Puget Sound Partnership was created by a Washington State statute to implement a science-based recovery of the Puget Sound to help address impacts to these resources. As part of the recovery, the partnership developed the Puget Sound Vital Signs as measures of ecosystem health that guide the assessment of progress toward Puget Sound recovery goals. The Puget Sound Partnership Leadership Council adopted a Drinking Water Vital Sign associated with human health and quality of life, recognizing certain indicators as integral to the sustainability of Puget Sound recovery efforts. One such Vital Sign indicator was the vulnerability of groundwater throughout the aquifers of the Puget Sound basin to elevated nitrate concentrations as defined by the probability of exceeding 2 milligrams/liter (mg/L) at a specific location and well depth. The U.S. Geological Survey (USGS) led the effort to characterize groundwater vulnerability. For this study, groundwater vulnerability refers to a probability with which a contaminant applied at or near the land surface can migrate to the aquifer of interest for a given set of land-use practices. Nitrate concentration data were selected for evaluation because elevated nitrate concentrations are typically caused by anthropogenic activities and have been associated with deleterious impacts on human health. To identify groundwater vulnerability to elevated nitrate concentrations, logistic regression was used to relate anthropogenic (human associated) and natural variables to the occurrence of elevated nitrate concentrations in untreated groundwater from large public water supply system wells found within the Washington State Department of Health Sentry database. Variables that were analyzed included well depth, soil hydraulic conductivity, precipitation, population density, fertilizer application amounts, and land-use types. Statistically significant models that predicted the probabilities of groundwater nitrate concentrations greater than 2 mg/L based on the predictor variables were created for the time periods 2000–04, 2005–09, 2010–14, and 2015–19. For all time periods, well depth and a measure of the abundance of urban and agricultural land over or near the well consistently helped explain the vulnerability of the well to elevated nitrate concentrations defined as a probability of exceeding 2 mg/L of nitrate. Precipitation and (or) soil hydraulic conductivity were also important predictor variables in the models. The models for each time period were used to create maps of groundwater vulnerability at 150- and 300-foot depths throughout the Puget Sound basin. As expected, the most vulnerable locations were associated with shallower well depths and increased agriculture and urban land cover. Across all four time periods, groundwater vulnerability throughout the Puget Sound was low, with probabilities of exceeding 2 mg/L concentrations of nitrate at depths at 150 and 300 feet typically less than 50 percent. Results also found a slight decrease in probabilities of elevated nitrate concentrations throughout the basin over time. More specifically, additional statistical tests found that groundwater with probabilities of less than about 60 percent declined from 2000 to 2019 and represented more than 75 percent of the modeled Puget Sound basin aquifer. Wells with greater than 60 percent probability increased over the same time period but represented only about 25 percent of the aquifer. The maps and statistical analysis presented in the study provide valuable and informative evaluation of the vulnerability of groundwater in the Puget Sound basin to elevated nitrate concentrations. The probability maps do not represent measured nitrate concentrations in groundwater, but rather they present the probability that nitrate concentrations exceed 2 mg/L. The models and predictions from this study are a viable indicator for the Puget Sound Partnership’s Healthy Human Population—Drinking Water Vital Sign. The logistic regression modeling approach presented here benefits water managers by allowing them to assess temporal trends in a range of probabilities, explore vulnerability changes as new regional land cover and anthropogenic data are generated, and distinguish vulnerabilities at different depths within the aquifer.

Washington

Economic Growth and Landscape Change

Prato and Fagre offer the first systematic, multi-disciplinary assessment of the challenges involved in managing the Crown of the Continent Ecosystem (CCE), an area of the Rocky Mountains that includes northwestern Montana, southwestern Alberta, and southeastern British Columbia. The spectacular landscapes, extensive recreational options, and broad employment opportunities of the CCE have made it one of the fastest growing regions in the United States and Canada, and have lead to a shift in its economic base from extractive resource industries to service-oriented recreation and tourism industries. In the process, however, the amenities and attributes that draw people to this “New West” are under threat. Pastoral scenes are disappearing as agricultural lands and other open spaces are converted to residential uses, biodiversity is endangered by the fragmentation of fish and wildlife habitats, and many areas are experiencing a decline in air and water quality. Sustaining Rocky Mountain Landscapes provides a scientific basis for communities to develop policies for managing the growth and economic transformation of the CCE without sacrificing the quality of life and environment for which the land is renowned. This forthcoming edited volume focuses on five aspects of sustaining mountain landscapes in the CCE and similar regions in the Rocky Mountains. The five aspects are: 1) how social, economic, demographic and environmental forces are transforming ecosystem structure and function, 2) trends in use and conditions for human and environmental resources, 3) activating science, policy and education to enhance sustainable landscape management, 4) challenges to sustainable management of public and private lands, and 5) future prospects for achieving sustainable landscapes.

Book chapter

Characterizing the early life history of an imperiled freshwater mussel ( Ptychobranchus jonesi ) with host-fish determination and fecundity estimation

Conservation of imperiled species is frequently challenged by insufficient knowledge of life history and environmental factors that affect various life stages. The larvae (glochidia) of most freshwater mussels in the family Unionidae are obligate ectoparasites of fishes. We described the early life history of the federally endangered Southern Kidneyshell Ptychobranchus jonesi and compared methods for estimating fecundity and conducting host trials on this conglutinate-producing mussel species. Glochidial inoculation baths and direct feeding of conglutinates to Percina nigrofasciata , Etheostoma edwini , and Etheostoma fusiforme resulted in successful metamorphosis to the juvenile life stage. Ptychobranchus jonesi glochidia did not metamorphose on 25 other species of fishes tested representing 11 families. Three juveniles were recovered from Gambusia holbrooki resulting in a metamorphosis rate <1%. We characterize P. jonesi as a host-fish specialist that fractionally releases conglutinates from late January to early June. Intact P. jonesi conglutinates resemble simuliid fly larvae attached to an egg-like structure, but most conglutinates were released as segments representing separate egg or larva mimics. Viability of glochidia encased within a conglutinate was >90% for ≥5 d. Feeding conglutinates directly to fishes allowed us to estimate seminatural infestation rates and calculate average numbers of juveniles produced per conglutinate, unlike the traditional approach of infesting fish hosts in an inoculation bath. Regressions based on the physical dimensions of each conglutinate or conglutinate segment were the most practical method used to estimate fecundity. Species distribution information, early life-history description, and methods developed for determining fecundity and conducting host trials may assist in the conservation of P. jonesi during recovery options that include captive propagation, augmentation, and reestablishment.

Alabama, Florida

Infection of the walleye, Stizostedion v. vitreum, of western Lake Erie with Bothriocephalus cuspidatus (Cooper)

In recent years appreciable changes have taken place in the biota and physiochemical conditions in Lake Erie. The accelerated eutrophication of the lake has been accompanied by the near disappearance of several fish species, e.g., blue pike (Stizostedion vitreum glaucum), lake herring (Coregonus artedi), lake trout (Salvelinus namaycush), sauger (Stizostedion canadense), and whitefish (Coregonus clupeaformis). Interest in the biology of the remaining species has increased as means have been sought to preserve their numbers in the lake. This report, which describes the caecal and intestinal parasites of the walleye, Stizostedion vitreum vitreum, is a contribution to the natural history of this fish in western Lake Erie. This study concerns: the type and degree of intestinal parasitic infestations in a single year class of walleyes during their first 3 years of life; seasonal changes in the incidence and maturity of the dominant parasite Bothriocephalus cuspidatus; and the effects of the infestations on the physical condition of the host.

Papers of the Michigan Academy of Science, Arts, a

The partnership between park wild life management policy and landscape wild life management policy. How shall we then manage?

Resources management practices are changing in North America, not only based on greater understanding of the resources that are being managed, but also on some critical sociological relationship changes between human beings and between humans and nature. The entire way that humans look at the natural world and our own society is changing dramatically as we come to the end of the twentieth century. Managers are changing from making belief-based decisions to making informed knowledge-based decisions through better science programs. Society appears to increasingly be making a shift to a community mind-set, a mind-set of connectedness and interdependence, and away from strict individualism. Managers appear to be ready to embrace the concept of unity and wholeness; to understand that humans and nature are inextricably tied to each other’s wellbeing

George Wright Society Forum

Cape Romain partnership for coastal protection

This final report summarizes activities, outcomes, and lessons learned from a 3-year project titled “Climate Change Adaptation for Coastal National Wildlife Refuges” with the Cape Romain National Wildlife Refuge (NWR) and local partners in the surrounding South Carolina Lowcountry. The Lowcountry is classified as the 10-county area encompassing the coastal plain of South Carolina (this report specifically focuses on Berkeley, Charleston, and Georgetown Counties). The goals of this work, sponsored by the U.S. Geological Survey’s Southeast Climate Adaptation Science Center (SECASC), were to foster active engagement with stakeholders; to develop a comprehensive definition of adaptation problems faced by agencies, organizations, and individuals near the Cape Romain NWR that accounts for global change, local values, knowledge and perceptions; and to encourage social learning and building of effective networks and trust across South Carolina Lowcountry organizations and individuals. Although project scoping began at the scale of the Atlantic seaboard, by engaging with NWRs from Massachusetts to Florida, participating refuge personnel eventually selected the Cape Romain NWR to serve as a case study for testing our goals. The Cape Romain Partnership for Coastal Conservation was established to address global change impacts at a regional level and includes representation from Federal and State resource agencies, local conservation nongovernmental organizations, and organizations representing underserved community interests. Research topics, originating from discussions with Cape Romain Partnership for Coastal Conservation members, focused on quantifying key drivers of change including localized sea-level rise (SLR) predictions, estimates of coastal hurricane inundation as amplified by SLR, and urban growth trends and forecasts. These key drivers provided a foundation to engage stakeholders in planning exercises to begin a process of collective understanding and collaborative decision making. The goal of this process was to develop collective strategies of adaptation to enhance community and ecosystem resilience in the South Carolina Lowcountry. South Carolina’s Lowcountry is experiencing rapid environmental and social transformation because of SLR rates approaching twice the global average, chronic tidal flooding and catastrophic storm surges, erosion and loss of habitats that provide essential services to wildlife and humans, and increasing social polarization fueled by aggressive low-density urban growth and other forms of land conversion. To support characterizations of plausible future scenarios, we used available or, in some cases, developed new models to project future conditions of key environmental and social-economic drivers. Because of the imprecision of mean global SLR projections, the SECASC commissioned a climatological study to account for local conditions and multiple representative concentration pathways to project a tailored distribution of future sea levels. These projections were matched to SLR scenarios provided by existing models to anticipate the range of future coastal habitat changes in the South Carolina Lowcountry. SLR scenarios were also incorporated into existing storm-surge models, which do not account for alternate baseline sea levels, to project the local effects of future hurricanes. To evaluate the extent and effects of population growth and urban expansion, we relied on an existing urban-growth model to map the spatial distribution of land-conversion probabilities, the total area of which is predicted to increase twofold to threefold over the next 60 years. In addition to this simplified model, an econometric model is in development to account for nonlinear feedback dynamics in land value, land use, and ecosystem service production. Although not yet completed, the goals of this model are to produce more-detailed projections of growth dynamics and to allow predictions of development patterns resulting from alternate land-use planning policies and incentives. Collaborative planning for an uncertain future requires more than providing decision makers with information on future physical and ecological conditions; developing effective and consensual strategies must also integrate sociological values, multiple cultural perspectives, and an understanding of human behavior. To support broad stakeholder engagement in integrative approaches to adaptation planning, emphasis was placed on the importance of considering differences in how individuals perceive their environment and create meaning. Because cultural frameworks form the basis for perceptions and, ultimately, the behaviors of individuals and institutions, we describe a model of human behavior and how it can be used to understand the effect of cultural complexity and variation in perception on choices, behavioral change, and long-term maintenance of behaviors. We consider a model commonly used in the field of behavioral health that accommodates variation in human perception when describing stages of behavior and the dynamics of behavioral change. Tailoring communication and engagement activities to targeted stakeholders is likely to benefit from increased understanding of behavioral change processes. The complex nature of this problem limited the usefulness of a traditional decision-analytic approach, we explored alternative methods for engagement, collaborative learning and decision making. Recognizing that project partners and Lowcountry stakeholders may be at different stages of preparedness and interest level for modifying behavior as a function of global change, we facilitated a scenario-planning exercise to familiarize partners with this well-established approach for communicating the opportunities and threats arising under alternative, plausible futures. We developed narratives for four alternative South Carolina Lowcountry scenarios to be used in later strategic planning that focus on quantitative trends for three primary drivers with high impact and high uncertainty: manifestations of climate change, social-political shifts at a global level, and forces of local value and power structures. This scenario-planning exercise underscored the complex relation between the temporospatial scale of the production of ecological goods and services and the institutional scale at which they are managed. We then guided the partners through an assessment of the relevant strengths and weaknesses of the Cape Romain Partnership for Coastal Protection, using the threats and opportunities characterized by each scenario to understand how the partnership might respond when attempting to meet conservation and societal objectives. The partnership identified key strengths including partnership experience, outreach and technical capacities, a substantial conservation land base, and high social cohesion in the South Carolina Lowcountry. Limited communication expertise, institutional inertia, and insufficient staffing and funding were recognized as important weaknesses across the partnership. By examining and scoring combinations of internal strengths and weaknesses and external threats and opportunities, the partnership developed sets of prioritized strategies to consider in the context of a given scenario. Although we had insufficient time to examine all scenarios in detail, the intent was to identify a portfolio of strategic actions to address threats and opportunities represented in multiple plausible futures. Top-ranking strategies encompassed a range of actions that focused on strengthening the conservation community and communicating the benefits of nature (that is, ecosystem services) to leveraging partnerships to expand land protection. This report also details the methods and preliminary results of several models developed or applied in support of this project. Two parcel-selection algorithms were used to evaluate anticipated habitat changes and patterns of urban growth to guide decisions on optimal conservation reserve design to protect habitat communities. One approach used a widely available planning software (MARXAN) to maximize conservation benefits near the Cape Romain NWR, whereas the other approach was a novel application of economic theory to account for uncertainty in future conditions and for the risks of unanticipated habitat loss. This latter model applies modern portfolio theory to estimate the risk of investing in any portfolio of land parcels (that is, candidate “reserves”) under climate-change uncertainty by quantifying the variation and spatial correlation of conservation benefits derived from each portfolio. We expanded the range of actions beyond simply whether or not to invest in a set of land parcels, an approach commonly used in spatial conservation planning, to also include consideration of divestment from currently protected lands. Such refinements allow for better accounting of system dynamics and can evaluate the benefits of flexible conservation tools such as rolling easements. Model results were conditional on a decision maker’s risk tolerance but highlighted general strategies of land conservation to increase future habitat representation beyond what is expected under the current protected land base. We built models that may help inform coastal planning by estimating salinity dynamics and the performance of oyster reef restoration efforts to predict the combined effects of global change and management of freshwater flows on coastal habitats and the processes that contribute to their resilience. These models can support restoration decisions by evaluating the expected benefits of site locations for shoreline protection and fisheries production. Lastly, we developed a spatially explicit economic model that predicts feedback dynamics among land value, land-use change, and effects on ecosystem service provision to explore zoning policies and incentives on urban growth and ecosystem services. We summarize these efforts with insights and considerations for the Cape Romain Partnership for Coastal Protection to continue to engage stakeholders in effective adaptation planning. First, notions of place attachment (referred to as sense of place), and the role of culture in social discourse are increasingly being used to understand the complex interactions between society and the environment and how societies respond and adapt to climate change. Sense of place was a unifying theme whenever the future of the South Carolina Lowcountry was discussed. The contribution of the South Carolina Lowcountry’s environmental wealth, rich cultural heritage, and quality of life to sense of place has important implications for how adaptation planning might best be pursued. More community-based governance of the commons (in other words, natural and cultural resources held in common), in which broad stakeholder participation and power sharing are key elements, is considered important. This devolution of governance is characterized by polycentric institutions and self-organizing social networks that promote a local culture of knowledge sharing, problem solving, and learning. These so-called bridging organizations (or individuals) often provide the leadership necessary to bring together potentially disparate Government agencies and institutions, private organizations, and individuals in a collective process of problem solving. Our observations also suggest that the conservation community in the South Carolina Lowcountry views its activities as integral to the broader governance of social-ecological systems, in which responses to the forces of global change are mediated through culture, economics, and politics. Rather than directly competing with other interests, the South Carolina Lowcountry conservation community seems to embrace an interpretation of conservation in which the fundamental objective is the quality of human life rather than environmental protection. Fundamental to the types of governance reforms described above is the notion of coproduction, in which experts and users collaborate to develop a shared body of knowledge. In this approach, scientists work with stakeholders to help frame questions, design research, and collect and analyze data. Such sustained collaborations are increasingly believed to be an effective way to produce useable (or actionable) science. The emphasis on social learning, leveraging strong social networks, coordinating and deliberating among diverse stakeholders, and applying principles of adaptive management is an essential contribution to adaptive capacity. The diverse and robust set of scientific approaches, methods to help stakeholders collaborate in effective and goal-driven planning processes, and decision tools resulting from this project hopefully will assist Cape Romain NWR and its partners prepare for climatic, ecological, and social changes over the coming decades.

South Carolina

Annotated bibliography of scientific research on Taeniatherum caput-medusae published from January 2010 to January 2022

Integrating recent scientific knowledge into management decisions supports effective natural resource management and can lead to better resource outcomes. However, finding and accessing scientific knowledge can be time consuming and costly. To assist in this process, the U.S. Geological Survey is creating a series of annotated bibliographies on topics of management concern for western lands. Previously published reports introduced a methodology for preparing annotated bibliographies to facilitate the integration of recent, peer-reviewed science into resource management decisions. Therefore, relevant text from those efforts is reproduced here to frame the presentation. Invasive annual grasses are widely distributed throughout the western United States and threaten native ecosystems by altering fire regimes, replacing native plants, and altering grazing patterns, often with tremendous associated costs. One invasive annual grass, Taeniatherum caput-medusae (hereafter, medusahead), was first documented in the United States in 1887 and has been identified as a species of management concern. Medusahead’s life history traits allow it to quickly and effectively dominate native plant communities, and it has already taken over millions of acres in western North America. Although medusahead can spread widely and disrupt ecosystem function, it has been studied less than other western invasive grass species. We compiled and summarized peer-reviewed journal articles, data products, and formal technical reports (such as U.S. Department of Agriculture Forest Service General Technical Reports and U.S. Geological Survey Open-File Reports) on medusahead, published between January 2010 and January 2022. We first performed a systematic search of three reference databases and three government databases using the search phrase “medusahead” OR “medusa head” OR “ Taeniatherum caput-medusae ” OR “ Taeniatherum caputmedusae ” OR “ Taeniatherum asperum .” We refined the initial list of products by removing (1) duplicates, (2) products not written in English, (3) publications that were not focused on North America, (4) publications that were not published as research, data products, or scientific review articles in peer-reviewed journals or as formal technical reports, and (5) products for which medusahead was not a research focus, or the study did not present new data or findings about medusahead. We summarized each product using a consistent structure (background, objectives, methods, location, findings, and implications) and identified the management topics (for example, species and population characteristics; habitat; and control and management efforts) addressed by each product. We also noted which publications included new geospatial data. The review process for this annotated bibliography included an initial internal colleague review of each summary, requesting input on each summary from an author of the original publication, and a formal peer review. Our initial searches resulted in 4,245 total products, of which 211 met our criteria for inclusion. The most commonly addressed management topics addressed in products summarized in the annotated bibliography were as follows: nonnative invasive plants, weed management, site-scale habitat characteristics, habitat restoration or reclamation, and cultural management of weeds. All published bibliographies, including the online version of this bibliography, are available at the Science for Resource Managers ( https://apps.usgs.gov/science-for-resource-managers ). This database is searchable by topic, location, and year and includes links to each original publication. The studies compiled and summarized here may inform planning and management actions that seek to maintain and restore sagebrush landscapes and associated native species across the western United States.

Open-File Report

Effect of flood-induced chemical load on filtrate quality at bank filtration sites

Riparian municipal wells, that are located on riverbanks, are specifically designed to capture a portion of the river water through induced infiltration. Runoff from agricultural watersheds is found to carry enormous amounts of pesticides and nitrate. While the risk of contamination for a vast majority of sites with small-capacity vertical wells is low, potential exists for medium to large capacity collector wells to capture a fraction of the surface water contaminants during flood. Prior monitoring and current modeling results indicate that a small-capacity (peak pumpage 0.0315 m3/s) vertical bank filtration well may not be affected by river water nitrate and atrazine even during flood periods. For a medium capacity (0.0875-0.175 m3/s) hypothetical collector well at the same site, potential exists for a portion of the river water nitrate and atrazine to enter the well during flood periods. Various combinations of hydraulic conductivity of the riverbed or bank material were used. For nitrate, it was assumed either no denitrification occurred during the period of simulation or a half-life of 2 years. Equilibrium controlled sorption (organic carbon partition coefficient of 52 ml/g) and a half-life of between 7.5 and 15 weeks were considered for atrazine. Combinations of these parameters were used in various simulations. Peak concentrations of atrazine or nitrate in pumped water could vary from less than 1% to as high as 90% of that in the river. It was found that a combination of river stage, pumping rates, hydraulic properties of the riverbed and bank, and soil/pesticide properties could affect contaminant entry from river water to any of these wells. If the hydraulic conductivity of the bed and bank material were low, atrazine would not reach the pumping well with or without sorption and degradation. However, for moderately low permeable bank and bed materials, some atrazine from river water could enter a hypothetical collector well while pumping at 0.0875 m3/s. It was interesting to note that doubling the pumpage of this collector well would bring in more ground water from the aquifer (with no atrazine) and thus have a lower concentration of atrazine in the filtrate. For highly conductive banks, it is possible to find some atrazine at a vertical well for a sustained pumpage rate of 0.0125 m3/s if the effect of sorption is neglected. However, with equilibrium sorption, the concentration would be below the detection limit. On the other hand, if a collector well of capacity 0.0875 m3/s is used at the place of the vertical well with highly conductive banks, atrazine concentration in the filtrate would be about 80% of river water even assuming equilibrium sorption and a half-life of 7.5 weeks. Remediation of river water contamination of the aquifer using 'scavenger' wells between the river and the pumping well(s) was not a feasible option due to the contact of the aquifer with a highly conductive bank at the site. However, moving the existing pumping well(s) 100 m upstream would have negligible impact from the bank-stored water. ?? 2002 Elsevier Science B.V. All rights reserved.

Journal of Hydrology

Linking physical monitoring to coho and Chinook salmon populations in the Redwood Creek Watershed, California—Summary of May 3–4, 2012 Workshop

On Thursday, May 3, 2012, a science workshop was held at the Redwood National and State Parks (RNSP) office in Arcata, California, with researchers and resource managers working in RNSP to share data and expert opinions concerning salmon populations and habitat in the Redwood Creek watershed. The focus of the workshop was to discuss how best to synthesize physical and biological data related to the freshwater and estuarine phases of salmon life cycles in order to increase the understanding of constraints on salmon populations. The workshop was hosted by the U.S. Geological Survey (USGS) Status and Trends (S&T) Program National Park Monitoring Project ( http://www.fort.usgs.gov/brdscience/ParkMonitoring.htm ), which supports USGS research on priority topics (themes) identified by the National Park Service (NPS) Inventory and Monitoring Program (I&M) and S&T. The NPS has organized more than 270 parks with significant natural resources into 32 Inventory and Monitoring (I&M) Networks ( http://science.nature.nps.gov/im/networks.cfm ) that share funding and core professional staff to monitor the status and long-term trends of selected natural resources ( http://science.nature.nps.gov/im/monitor ). All 32 networks have completed vital signs monitoring plans (available at http://science.nature.nps.gov/im/monitor/MonitoringPlans.cfm ), containing background information on the important resources of each park, conceptual models behind the selection of vital signs for monitoring the condition of natural resources, and the selection of high priority vital signs for monitoring. Vital signs are particular physical, chemical, and biological elements and processes of park ecosystems that represent the overall health or condition of the park, known or hypothesized effects of stressors, or elements that have important human values (Fancy and others, 2009). Beginning in 2009, the I&M program funded projects to analyze and synthesize the biotic and abiotic data generated by vital signs monitoring and previous in-park natural resource monitoring and inventories to provide useful information, models, and tools to park managers for addressing resource management issues. The workshop described in this report is an element of the project funded by USGS NPS-I&M program to conduct a synthesis of salmon-related datasets in the Klamath (KLMN) and San Francisco Bay Area (SFAN) networks of national parks. The synthesis focused on four park units: Redwood National Park (KLMN), Point Reyes National Seashore, Muir Woods National Monument, and Golden Gate National Recreation Area (SFAN).

California

Efficacy of otoliths and first dorsal spines for preliminary age and growth determination in Atlantic Tripletails

The Atlantic Tripletail Lobotes surinamensis is a popular sport fish for which age and growth data are scarce in general and nonexistent for Georgia (GA), USA, waters. These data are necessary to ensure that management regulations are adequate to protect this species, especially given its popularity as a sport fish. We evaluated whether otoliths and spines were suitable for determining the estimated age (hereafter, “age”) and growth rates of Atlantic Tripletails, and we ascertained whether one method was more accurate than the other. Atlantic Tripletails were sampled by angling and trawling during March 30–August 10, 2009, and March 14–August 6, 2010, in nearshore GA waters of the Atlantic Ocean. During the study, 243 Atlantic Tripletails were captured and sampled for aging structures. Sagittal otoliths and the first dorsal spine were removed from each fish and used to estimate the age and growth rate. Mean differences in TL at age for spine and otolith data were evaluated with ANOVA. Estimated ages for males and females ranged from 1 to 5 years based on otoliths and spines. Both otolith and spine mean TLs at ages 1 and 2 were significantly different from each other as well as all other age‐classes, whereas mean TLs for ages 3–5 were not significantly different. Differences in Atlantic Tripletail TL among the otolith‐ and spine‐derived age‐classes were not significant. Each method used to age Atlantic Tripletails had advantages and disadvantages. Otoliths had higher initial reader agreement than spines, although agreement between the structures was 84.1%. However, otoliths require sacrifice of the fish, whereas a spine can be taken without sacrificing the fish. The lack of concrete life history data and population estimates suggests that when feasible, nonlethal aging methods would be preferred over lethal methods to ensure the survival of Atlantic Tripletail populations.

Georgia

Data services in ocean science with a focus on the biology

Biological ocean science has a long history; it goes back millennia, whereas the related data services have emerged in the recent digital era of the past decades. To understand where we come from—and why data services are so important—we will start by taking you back to the rise in the study of marine biology—marine biodiversity—and its key players, before immersing ourselves in the data life cycle, past and present joint global initiatives, and systems that allow(ed) scientists to more easily access biological data, online services through some simple keyboard strokes, and the many challenges we still encounter on a daily basis when dealing with these types of data.

Book chapter

Borehole-explosion and air-gun data acquired in the 2011 Salton Seismic Imaging Project (SSIP), southern California: description of the survey

The Imperial and Coachella Valleys are being formed by active plate-tectonic processes. From the Imperial Valley southward into the Gulf of California, plate motions are rifting the continent apart. In the Coachella Valley, the plates are sliding past one another along the San Andreas and related faults (fig. 1). These processes build the stunning landscapes of the region, but also produce damaging earthquakes. Rupture of the southern section of the San Andreas Fault (SAF), from the Coachella Valley to the Mojave Desert, is believed to be the greatest natural hazard that California will face in the near future. With an estimated magnitude between 7.2 and 8.1, such an event would result in violent shaking, loss of life, and disruption of infrastructure (freeways, aqueducts, power, petroleum, and communication lines) that might bring much of southern California to a standstill. As part of the nation’s efforts to avert a catastrophe of this magnitude, a number of projects have been undertaken to more fully understand and mitigate the effects of such an event. The Salton Seismic Imaging Project (SSIP), funded jointly by the National Science Foundation (NSF) and the U.S. Geological Survey (USGS), seeks to understand, through seismic imaging, the structure of the Earth surrounding the SAF, including the sedimentary basins on which cities are built. The principal investigators (PIs) of this collaborative project represent the USGS, Virginia Polytechnic Institute and State University (Virginia Tech), California Institute of Technology (Caltech), Scripps Institution of Oceanography (Scripps), University of Nevada, Reno (UNR), and Stanford University. SSIP will create images of underground structure and sediments in the Imperial and Coachella Valleys and adjacent mountain ranges to investigate the earthquake hazards posed to cities in this area. Importantly, the images will help determine the underground geometry of the SAF, how deep the sediments are, and how fast earthquake energy can travel through the sediments. All of these factors determine how hard the earth will shake during a major earthquake. If we can improve on our understanding of how and where earthquakes will occur, and how strong their resultant shaking will be, then buildings can be designed or retrofitted accordingly in order to resist damage and collapse, and emergency plans can be adequately prepared. In addition, SSIP will investigate the processes of rifting and magmatism in the Salton Trough in order to better understand this important plate-boundary region. The Salton Trough is a unique rift in that subsidence is accompanied by huge influxes of infilling sediment from the Colorado River. Volcanism that accompanies the subsidence here is muted by these influxes of sediment. The Salton Trough, in the central part of the Imperial Valley, is apparently made up of entirely new crust: young sediment in the upper crust and basaltic intrusive rocks in the mid-to-lower crust (Fuis and others, 1984). Similar to the ultrasound and computed tomography (CT) scans performed by the medical industry, seismic imaging is a collection of techniques that enable scientists to obtain a picture of what is underground. The petroleum industry routinely uses these techniques to search for oil and gas at relatively shallow depths; however, the scope of this project demanded that we image as much as 30 km into the Earth’s crust. This project generated and recorded seismic waves, similar to sound waves, which move downward into the Earth and are bent (refracted) or echoed (reflected) back to the surface. SSIP acquired data in a series of intersecting lines that cover key areas of the Salton Trough. The sources of sound waves were detonations (shots) in deep boreholes, designed to create energy equivalent to magnitude 1–2 earthquakes. The study region routinely experiences earthquakes of these magnitudes, but earthquakes are not located in such a way as to permit us to create the detailed images we need for earthquake hazard assessment. Air gun bursts, generated in the Salton Sea along extensions of our onshore seismic lines, also were utilized as sound-wave sources. Temporary deployments of portable land seismometers, as well as ocean-bottom seismometers (OBSs) on the floor of the Salton Sea, recorded the energy from the land shots and air gun bursts. SSIP is similar to the Los Angeles Regional Seismic Experiments of 1994 and 1999 (LARSE I and II, respectively; Murphy and others, 1996; Fuis and others, 2001). The LARSE surveys demonstrated that the USGS and collaborators can safely and effectively conduct seismic imaging surveys in urban and nonurban areas, on lands owned and/or managed by many different types of agencies and entities. Information was produced that could not have been obtained any other way, and this information was key to changing the leading ideas about earthquake hazards at that time in the Los Angeles region. These surveys produced no significant environmental impact or damage to structures, and they did not trigger earthquakes.

California

Toxicity and accumulation of silver nanoparticles during development of the marine polychaete Platynereis dumerilii

Pollutants affecting species at the population level generate ecological instability in natural systems. The success of early life stages, such as those of aquatic invertebrates, is highly affected by adverse environmental conditions. Silver released into the environment from emerging nanotechnology represents such a threat. Sediments are sinks for numerous pollutants, which aggregate and/or associate with depositing suspended particles. Deposit feeder such as the annelid Platynereis dumerilii, which has a large associated literature on its development, is an excellent model organism for exposure studies in coastal environments. We exposed eggs, larvae, juveniles and adults of P. dumerilii to various concentrations of citrate (cit-Ag NPs) or humic acid (HA-Ag NPs) capped silver nanoparticles (Ag NPs) as well to dissolved Ag (added as AgNO3). We showed that mortality and abnormal development rate increased with younger life stages. While adults and juvenile were the most tolerant life stages, fertilized eggs were highly sensitive to AgNO3, cit-Ag NPs and HA-Ag NPs. Exposures to HA-Ag NPs triggered the highest cute toxicity responses in P. dumerilii and in most cases both Ag NPs were more toxic than AgNO3. Uptake rate of HA-Ag NPs in adult worms was also higher than from other Ag forms, consistent with toxicity to other life stages. The early stages of the life cycle of marine coastal organisms are more affected by Ag NPs than the juvenile or adult life stages, indicating that exposure experiments at the larval level contribute to realistic eco-toxicological studies in aquatic environments.

Science of the Total Environment

Recruitment dynamics and reproductive ecology of Blue Sucker in Texas, with a focus on the Big Bend region of the Rio Grande

Blue Sucker Cycleptus elongatus is a state-listed threatened species in Texas and is considered vulnerable throughout its range. Once considered a single, wide-ranging species, blue suckers are now recognized as a complex of closely related, but genetically and morphologically distinct species within the genus Cycleptus , including an undescribed species within the Rio Grande Basin. Numerous factors likely are driving the decline of blue suckers in Texas, including flow alteration, water quality, habitat fragmentation, and changing land-use patterns, but it is not clear how these factors interact to influence the abundance and distribution of the species. Our research integrates a variety of methodologies to provide information critical to the conservation and management of Blue Sucker in the Sabine River (Texas and Louisiana) and Colorado River (Texas) and Rio Grande Blue Sucker Cycleptus sp. cf. elongatus in the Rio Grande. The objectives of this report are to 1) determine the habitat associations of the young-of-year (YOY) Rio Grande Blue Sucker; 2) assess the effects of flow regime on growth and recruitment of Blue Sucker in the lower Sabine River; and 3) examine differences in life-history traits of Blue Suckers and flow regime across river basins in Texas. This study is the first to quantitatively address the sequence of YOY blue sucker mesohabitat use and increases our understanding of early life history of blue suckers, and the results of this work will help to develop conservation and management strategies, e.g., prioritizing conservation areas, developing flow recommendation, etc., for blue suckers throughout their geographic distribution.

Texas

Chemical contaminants in water and sediment near fish nesting sites in the Potomac River basin: determining potential exposures to smallmouth bass (Micropterus dolomieu)

The Potomac River basin is an area where a high prevalence of abnormalities such as testicular oocytes (TO), skin lesions, and mortality has been observed in smallmouth bass (SMB, Micropterus dolomieu). Previous research documented a variety of chemicals in regional streams, implicating chemical exposure as one plausible explanation for these biological effects. Six stream sites in the Potomac basin (and one out-of-basin reference site) were sampled to provide an assessment of chemicals in these streams. Potential early life-stage exposure to chemicals detected was assessed by collecting samples in and around SMB nesting areas. Target chemicals included those known to be associated with important agricultural and municipal wastewater sources in the Potomac basin. The prevalence and severity of TO in SMB were also measured to determine potential relations between chemistry and biological effects. A total of 39 chemicals were detected at least once in the discrete-water samples, with atrazine, caffeine, deethylatrazine, simazine, and iso-chlorotetracycline being most frequently detected. Of the most frequently detected chemicals, only caffeine was detected in water from the reference site. No biogenic hormones/sterols were detected in the discrete-water samples. In contrast, 100 chemicals (including six biogenic hormones/sterols) were found in a least one passive-water sample, with 25 being detected at all such samples. In addition, 46 chemicals (including seven biogenic hormones/sterols) were found in the bed-sediment samples, with caffeine, cholesterol, indole, para-cresol, and sitosterol detected in all such samples. The number of herbicides detected in discrete-water samples per site had a significant positive relation to TO rank (a nonparametric indicator of TO), with significant positive relations between TO rank and atrazine concentrations in discrete-water samples and to total hormone/sterol concentration in bed-sediment samples. Such significant correlations do not necessarily imply causation, as these chemical compositions and concentrations likely do not adequately reflect total SMB exposure history, particularly during critical life stages.

Potomac River Basin

U.S. Geological Survey science vision for native freshwater mussel research in the United States

Executive Summary North America is a global center for native freshwater mussel (order Unionida, hereinafter “mussels”) diversity, with more than 350 species. Mussels are among the most imperiled fauna on the planet. Reasons for both local and widespread declines in mussels are mostly unknown, although the threats may include habitat loss and fragmentation, diseases, environmental contaminants, altered flow regimes, migration barriers to larval hosts, non-native species, and climate change. Over the past three decades, research on mussels has been substantial. Nevertheless, current conservation and management efforts are limited by significant information gaps. For example, the effects of emerging stressors on mussels are largely unknown and identifying when habitats are rehabilitated and suitable for reestablishment of mussels remains challenging. Additionally, historical and current information on the distribution, taxonomy, and life histories are often unreliable or lacking altogether, and more reliable information is needed for many species. We identified focal research themes, goals, and objectives where research on mussels is needed based on information gaps identified through conversations with resource partners across local, regional, and national organizations. Research on biodiversity seeks to enhance the diversity of mussel species and populations to support healthy aquatic ecosystems. Research on emerging stressors seeks to improve the understanding of how mussel species, populations, and communities respond to emerging stressors, including environmental contaminants and climate change. Research on conservation seeks to enhance the recovery of species and populations and to identify data gaps limiting the conservation of mussels and their habitats. Mussels are in urgent need of proactive conservation because they are an integral part of our natural heritage, enhance biodiversity, and provide vital ecological services that support freshwater ecosystems. The U.S. Geological Survey (USGS) has been, and continues to be, a leader in mussel research. Although the USGS is well suited to address the broad-scale multidisciplinary research needed to conserve mussels, the USGS has had substantial loss of scientists with mussel expertise over the past 20 years. However, the breadth of the USGS expertise on mussels can be leveraged internally across other USGS mission and program areas and externally across research partners. Given the breadth and scope of the issues facing mussels across the United States, the research themes outlined in this science vision can only be accomplished through extensive collaborations between the USGS and the full spectrum of natural resource partners, including other Federal and State agencies, Tribal organizations, universities, industries, and nongovernmental organizations.

Circular

Environmental DNA methods for ecological monitoring and biodiversity assessment in estuaries

Environmental DNA (eDNA) detection methods can complement traditional biomonitoring to yield new ecological insights in aquatic systems. However, the conceptual and methodological frameworks for aquatic eDNA detection and interpretation were developed primarily in freshwater environments and have not been well established for estuaries and marine environments that are by nature dynamic, turbid, and hydrologically complex. Environmental context and species life history are critical for successful application of eDNA methods, and the challenges associated with eDNA detection in estuaries were the subject of a symposium held at the University of California Davis on January 29, 2020 ( https://marinescience.ucdavis.edu/engagement/past-events/edna ). Here, we elaborate upon topics addressed in the symposium to evaluate eDNA methods in the context of monitoring and biodiversity studies in estuaries. We first provide a concise overview of eDNA science and methods, and then examine the San Francisco Estuary (SFE) as a case study to illustrate how eDNA detection can complement traditional monitoring programs and provide regional guidance on future potential eDNA applications. Additionally, we offer recommendations for enhancing communication between eDNA scientists and natural resource managers, which is essential for integrating eDNA methods into existing monitoring programs. Our intent is to create a resource that is accessible to those outside the field of eDNA, especially managers, without oversimplifying the challenges or advantages of these methods.

Estuaries and Coasts