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At least 271 records · Page 15Linked to original sources
USGS2022

Migration and energetics model predicts delayed migration and likely starvation in oiled waterbirds

Oil spills can inflict mortality and injury on bird populations; many of these deaths involve starvation resulting from thermoregulatory costs incurred by oiling of birds’ feathers. However, the fates and responses of sublethally oiled birds are poorly known. Due to this knowledge gap and the potential for birds to die far from the spill site, resource risk and injury assessors need tools to make informed estimates for delayed deaths and lost reproductive capacity in these birds. Focusing on the thermoregulatory cost of oiled feathers, we present a model addressing one facet of the effects of sublethal oiling on birds. Using mallard-like ducks as a model organism, we combined values from previous laboratory studies of oiled birds with a modified version of an existing temperature-influenced avian migration energetics model. Using this model, we examined the potential effects of oiling on general migration patterns, changes in energetic gains required to compensate for oiling, and starvation. We assessed all metrics across multiple oiling severities; we assessed starvation across both oiling severity and body condition. Median estimates for delays in spring migration were one to two months for trace and lightly oiled birds, and we predicted arrested spring migration in moderately oiled birds. Median estimates of required increases in energetic gains to offset costs of increased thermoregulation ranged from 20.3% to 88.6% depending on severity of oiling. We predicted starvation within four weeks for most combinations of oiling severity and body condition at the median predicted minimum wintering temperature of unoiled birds (-4.9°C). However, at the average winter temperature of the southernmost model latitude (10.8°C), we predicted only moderately oiled birds in less-than-excellent body condition had the potential to starve within a four-week time frame. Due to the potential for even trace oiling to delay spring migration and decrease body condition, the thermoregulatory costs of sublethal oiling during spring migration could reduce a bird's reproductive capacity. Future research integrating this initial energetics-based model into a spatially explicit, population scale migration model could provide additional insight into the potential effects of sublethal oiling on reproduction and survival. Such an integrated model could strengthen risk predictions and injury assessments for birds subjected to sublethal oiling.

Ecological Modelling↗
USGS2021

Acute oral toxicity and tissue residues of saxitoxin in the mallard (Anas platyrhynchos)

Since 2014, widespread, annual mortality events involving multiple species of seabirds have occurred in the Gulf of Alaska, Bering Sea, and Chukchi Sea. Among these die-offs, emaciation was a common finding with starvation often identified as the cause of death. However, saxitoxin (STX) was detected in many carcasses, indicating exposure of these seabirds to STX in the marine environment. Few data are available that describe the effects of STX in birds, thus presenting challenges for determining its contributions to specific mortality events. To address these knowledge gaps, we conducted an acute oral toxicity trial in mallards ( Anas platyrhynchos ), a common laboratory avian model, using an up-and-down method to estimate the median lethal dose (LD 50 ) for STX. Using an enzyme-linked immunosorbent assay (ELISA), we tested select tissues from all birds and feces from those individuals that survived initial dosing. Samples with an ELISA result that exceeded approximately 10 µg 100 g −1 STX and randomly selected ELISA negative samples were further tested by high-performance liquid chromatography (HPLC). Tissues collected from mallards were also examined grossly at necropsy and then later by microscopy to identify lesions attributable to STX. The estimated LD 50 was 167 µg kg −1 (95% CI = 69–275 µg kg −1 ). Saxitoxin was detected in fecal samples of all mallards tested for up to 48 h after dosing and at the end of the sampling period (7 d) in three birds. In those individuals that died or were euthanized <2 h after dosing, STX was readily detected throughout the gastrointestinal tract but only infrequently in heart, kidney, liver, lung, and breast muscle. No gross or microscopic lesions were observed that could be attributable to STX exposure. Given its acute toxicity, limited detectability, and frequent occurrence in the Alaska marine environment, additional research on STX in seabirds is warranted.

Harmful Algae↗
USGS2020

The pathogenesis of a North American H5N2 clade 2.3.4.4 group A highly pathogenic avian influenza virus in surf scoters (Melanitta perspicillata)

Background Aquatic waterfowl, particularly those in the order Anseriformes and Charadriiformes , are the ecological reservoir of avian influenza viruses (AIVs). Dabbling ducks play a recognized role in the maintenance and transmission of AIVs. Furthermore, the pathogenesis of highly pathogenic AIV (HPAIV) in dabbling ducks is well characterized. In contrast, the role of diving ducks in HPAIV maintenance and transmission remains unclear. In this study, the pathogenesis of a North American A/Goose/1/Guangdong/96-lineage clade 2.3.4.4 group A H5N2 HPAIV, A/Northern pintail/Washington/40964/2014, in diving sea ducks (surf scoters, Melanitta perspicillata ) was characterized. Results Intrachoanal inoculation of surf scoters with A/Northern pintail/Washington/40964/2014 (H5N2) HPAIV induced mild transient clinical disease whilst concomitantly shedding high virus titers for up to 10 days post-inoculation (dpi), particularly from the oropharyngeal route. Virus shedding, albeit at low levels, continued to be detected up to 14 dpi. Two aged ducks that succumbed to HPAIV infection had pathological evidence for co-infection with duck enteritis virus, which was confirmed by molecular approaches. Abundant HPAIV antigen was observed in visceral and central nervous system organs and was associated with histopathological lesions. Conclusions Collectively, surf scoters, are susceptible to HPAIV infection and excrete high titers of HPAIV from the respiratory and cloacal tracts whilst being asymptomatic. The susceptibility of diving sea ducks to H5 HPAIV highlights the need for additional research and surveillance to further understand the contribution of diving ducks to HPAIV ecology.

BMC Veterinary Research↗
USGS2024

Comparison of seven DNA metabarcoding sampling methods to assess diet in a large avian predator

DNA metabarcoding is a rapidly advancing tool for diet assessment in wildlife ecology. Studies have used a variety of field collection methods to evaluate diet; however, there is a pressing need to understand the differences among sampling methods and the downstream inferential consequences they may have on our ability to document diet accurately and efficiently. We evaluated seven DNA metabarcoding sampling methods to assess the diet of a large avian predator: Buteo lagopus (rough-legged hawk). We collected beak swabs, talon swabs, cheek (buccal) swabs, cloacal swabs, and cloacal loops from captured birds, and collected fecal samples from both captured and uncaptured birds. We described and compared variation in prey recovery within and among the seven sampling methods and identified appropriate analytical methods to compare diet among individuals sampled via different methods. Beak and talon swabs produced the highest prey detection rates, yielded the greatest prey richness per sample, and contributed the most to an individual's total prey richness per sampling occasion compared to other sampling methods. Within individuals sampled using five methods during a single capture occasion, cloacal swabs and cheek swabs positively predicted prey richness and average prey mass, respectively, from fecal samples. While all methods identified similar dominant prey taxa that were consistent with prior diet studies, beak and talon swabs detected greater prey richness at both the individual and population levels. We propose a food residue duration hypothesis whereby methods which sample areas containing food DNA consumed from longer and more continuous pre-sampling time intervals explain variation among sampling methods in observed prey richness. Choice of sampling method can influence predator diet characterization and is particularly important if researchers wish to quantify uncommon diet items or compare diet metrics using samples collected via different methods.

Environmental DNA↗
USGS2016

Spatiotemporal patterns of duck nest density and predation risk: a multi-scale analysis of 18 years and more than 10,000 nests

Many avian species are behaviorally-plastic in selecting nest sites, and may shift to new locations or habitats following an unsuccessful breeding attempt. If there is predictable spatial variation in predation risk, the process of many individuals using prior experience to adaptively change nest sites may scale up to create shifting patterns of nest density at a population level. We used 18 years of waterfowl nesting data to assess whether there were areas of consistently high or low predation risk, and whether low-risk areas increased, and high-risk areas decreased in nest density the following year. We created kernel density maps of successful and unsuccessful nests in consecutive years and found no correlation in predation risk and no evidence for adaptive shifts, although nest density was correlated between years. We also examined between-year correlations in nest density and nest success at three smaller spatial scales: individual nesting fields (10–28 ha), 16-ha grid cells and 4-ha grid cells. Here, results were similar across all scales: we found no evidence for year-to-year correlation in nest success but found strong evidence that nest density was correlated between years, and areas of high nest success increased in nest density the following year. Prior research in this system has demonstrated that areas of high nest density have higher nest success, and taken together, our results suggest that ducks may adaptively select nest sites based on the local density of conspecifics, rather than the physical location of last year's nest. In unpredictable environments, current cues, such as the presence of active conspecific nests, may be especially useful in selecting nest sites. The cues birds use to select breeding locations and successfully avoid predators deserve continued attention, especially in systems of conservation concern.

Oikos↗
USGS2023

North American wintering mallards infected with highly pathogenic avian influenza show few signs of altered local or migratory movements

Avian influenza viruses pose a threat to wildlife and livestock health. The emergence of highly pathogenic avian influenza (HPAI) in wild birds and poultry in North America in late 2021 was the first such outbreak since 2015 and the largest outbreak in North America to date. Despite its prominence and economic impacts, we know relatively little about how HPAI spreads in wild bird populations. In January 2022, we captured 43 mallards ( Anas platyrhynchos ) in Tennessee, USA, 11 of which were actively infected with HPAI. These were the first confirmed detections of HPAI H5N1 clade 2.3.4.4b in the Mississippi Flyway. We compared movement patterns of infected and uninfected birds and found no clear differences; infected birds moved just as much during winter, migrated slightly earlier, and migrated similar distances as uninfected birds. Infected mallards also contacted and shared space with uninfected birds while on their wintering grounds, suggesting ongoing transmission of the virus. We found no differences in body condition or survival rates between infected and uninfected birds. Together, these results show that HPAI H5N1 clade 2.3.4.4b infection was unrelated to body condition or movement behavior in mallards infected at this location during winter; if these results are confirmed in other seasons and as HPAI H5N1 continues to evolve, they suggest that these birds could contribute to the maintenance and dispersal of HPAI in North America. Further research on more species across larger geographic areas and multiple seasons would help clarify potential impacts of HPAI on waterfowl and how this emerging disease spreads at continental scales, across species, and potentially between wildlife and domestic animals.

Tennessee↗
USGS2025

AviList: A unified global bird checklist

Universally recognized scientific names for organisms are necessary for accurate and efficient communication. Incongruence in taxonomic treatments results in situations where one name is used for different entities or one entity is known by different names, with negative consequences for conservation, science, trade, legislation, law enforcement, and education, leading to discord among stakeholders and confusion among users. Within the ornithological community taxonomic incongruence among four widely adopted global bird checklists has led to calls for the development of a single unified global avian taxonomy or checklist. Here we introduce AviList, a comprehensive, collaborative and evolving effort towards developing a unified global avian taxonomy, spearheaded by representatives of most current global checklists and many major regional authorities, and supported by the International Ornithologists’ Union (IOU), BirdLife International and the Cornell Lab of Ornithology. AviList version 2025, the first version, was officially launched on 11 June 2025 and is available online as a comprehensive, searchable public-access database. It recognizes 11,131 bird species in 2376 genera, 252 families and 46 orders. This global effort has resolved over 1000 species-level taxonomic incongruences among existing checklists. With AviList’s launch, the IOC World Bird List and the Clements Checklist of Birds of the World have ceased any independent taxonomic updates, while BirdLife International is in the process of total alignment, leading to a harmonization in the classification underpinning a number of major bird projects, including eBird, Macaulay Library, Merlin Bird ID and the IUCN Red List. Adoption of AviList will improve inter-operability across global biodiversity, molecular, ecological and spatial databases (e.g. GBIF). Strong governance of AviList will ensure it is a “living” document that is regularly updated by a global community of bird taxonomists as new scientific advances are made, with positive impacts for conservation, academia and human society. It is hoped that AviList will support and encourage taxonomic science by identifying areas where further research is most needed, and that it will provide a blueprint for taxonomic authorities in other organismic groups endeavoring to achieve taxonomic harmonization.

Biodiversity and Conservation↗
USGS2022

Pathways for avian influenza virus spread: GPS reveals wild waterfowl in commercial livestock facilities and connectivity with the natural wetland landscape

Zoonotic diseases are of considerable concern to the human population and viruses such as avian influenza (AIV) threaten food security, wildlife conservation and human health. Wild waterfowl and the natural wetlands they use are known AIV reservoirs, with birds capable of virus transmission to domestic poultry populations. While infection risk models have linked migration routes and AIV outbreaks, there is a limited understanding of wild waterfowl presence on commercial livestock facilities, and movement patterns linked to natural wetlands. We documented 11 wild waterfowl (three Anatidae species) in or near eight commercial livestock facilities in Washington and California with GPS telemetry data. Wild ducks used dairy and beef cattle feed lots and facility retention ponds during both day and night suggesting use for roosting and foraging. Two individuals (single locations) were observed inside poultry facility boundaries while using nearby wetlands. Ducks demonstrated high site fidelity, returning to the same areas of habitats (at livestock facilities and nearby wetlands), across months or years, showed strong connectivity with surrounding wetlands, and arrived from wetlands up to 1251 km away in the week prior. Telemetry data provides substantial advantages over observational data, allowing assessment of individual movement behaviour and wetland connectivity that has significant implications for outbreak management. Telemetry improves our understanding of risk factors for waterfowl–livestock virus transmission and helps identify factors associated with coincident space use at the wild waterfowl–domestic livestock interface. Our research suggests that even relatively small or isolated natural and artificial water or food sources in/near facilities increases the likelihood of attracting waterfowl, which has important consequences for managers attempting to minimize or prevent AIV outbreaks. Use and interpretation of telemetry data, especially in near-real-time, could provide key information for reducing virus transmission risk between waterfowl and livestock, improving protective barriers between wild and domestic species, and abating outbreaks.

Transboundary and Emerging Diseases↗
USGS2002

Effects of fire and post-fire salvage logging on avian communities in conifer-dominated forests of the western United States

Historically, fire was one of the most widespread natural disturbances in the western United States. More recently, however, significant anthropogenic activities, especially fire suppression and silvicultural practices, have altered fire regimes; as a result, landscapes and associated communities have changed as well. Herein, we review current knowledge of how fire and post-fire salvaging practices affect avian communities in conifer-dominated forests of the western United States. Specifically, we contrast avian communities in (1) burned vs. unburned forest, and (2) unsalvaged vs. salvage-logged burns. We also examine how variation in burn characteristics (e.g., severity, age, size) and salvage logging can alter avian communities in burns. Of the 41 avian species observed in three or more studies comparing early post-fire and adjacent unburned forests, 22% are consistently more abundant in burned forests, 34% are usually more abundant in unburned forests, and 44% are equally abundant in burned and unburned forests or have varied responses. In general, woodpeckers and aerial foragers are more abundant in burned forest, whereas most foliage-gleaning species are more abundant in unburned forests. Bird species that are frequently observed in stand-replacement burns are less common in understory burns; similarly, species commonly observed in unburned forests often decrease in abundance with increasing burn severity. Granivores and species common in open-canopy forests exhibit less consistency among studies. For all species, responses to fire may be influenced by a number of factors including burn severity, fire size and shape, proximity to unburned forests, pre- and post-fire cover types, and time since fire. In addition, post-fire management can alter species' responses to burns. Most cavity-nesting species do not use severely salvaged burns, whereas some cavity-nesters persist in partially salvaged burns. Early post-fire specialists, in particular, appear to prefer unsalvaged burns. We discuss several alternatives to severe salvage-logging that will help provide habitat for cavity nesters. We provide an overview of critical research questions and design considerations crucial for evaluating the effects of prescribed fire and other anthropogenic disturbances, such as forest fragmentation. Management of native avifaunas may be most successful if natural disturbance regimes, including fire, are permitted to occur when possible. Natural fires could be augmented with practices, such as prescribed fire (including high-severity fire), that mimic inherent disturbance regimes.

Conference Paper↗
USGS2013

Antibodies to H5 subtype avian influenza virus and Japanese encephalitis virus in northern pintails (Anas acuta) sampled in Japan

Blood samples from 105 northern pintails ( Anas acuta ) captured on Hokkaido, Japan were tested for antibodies to avian influenza virus (AIV), Japanese encephalitis virus (JEV), and West Nile virus (WNV) to assess possible involvement of this species in the spread of economically important and potentially zoonotic pathogens. Antibodies to AIV were detected in 64 of 105 samples (61%). Of the 64 positives, 95% and 81% inhibited agglutination of two different H5 AIV antigens (H5N1 and H5N9), respectively. Antibodies to JEV and WNV were detected in five (5%) and none of the samples, respectively. Results provide evidence for prior exposure of migrating northern pintails to H5 AIV which couldhave implications for viral shedding and disease occurrence. Results also provide evidence for limited involvement of this species in the transmission and spread of flaviviruses during spring migration.

Japanese Journal of Veterinary Research↗
USGS2019

Global positioning system tracking devices can decrease Greater Sage-Grouse survival

Reliable demographic estimates hinge on the assumption that marking animals does not alter their behavior, reproduction, or survival. Violations can bias inference and are especially egregious for species of high conservation concern. Global positioning system (GPS) devices represent a recent technological advancement that has contributed greatly to avian ecological studies compared with traditionally used very high frequency (VHF) radio transmitters, but may affect demographic rates differently than VHF transmitters. We compared survival between VHF (necklace attachment) and GPS (rump-mounted attachment) devices from >1,100 Greater Sage-Grouse ( Centrocercus urophasianus ), a species of high conservation concern, across multiple populations within California and Nevada. We found lower survival for GPS-marked compared to VHF-marked sage-grouse across most sex, age, and seasonal comparisons. Estimates of annual survival for GPS-marked sage-grouse were 0.55–0.86 times that of VHF-marked birds with considerable variation among sex and age classes. Differences in survival could be attributed to features associated with GPS devices, including greater weight, position of attachment (e.g., rump-mount harness), and a semi-reflective solar panel. In a post hoc analysis, we evaluated additive and interactive effects between device type (GPS vs. VHF) and transmitter mass as a proportion of body mass (PBM). While the device type effect alone was the best model, the PBM interaction also had support. For GPS devices, survival decreased with increasing PBM, whereas PBM effects were not found for VHF. We attributed differences in PBM effect to placement of transmitters on sage-grouse, as weight of GPS devices was positioned rearward. This information can help managers and researchers weigh costs and benefits of GPS-based monitoring. Our results indicate demographic data collected from GPS devices should be interpreted with caution, and use of these devices should be tailored to specific ecological questions. Future research aimed at investigating behavioral impacts and GPS designs that reduce adverse impacts on survival would be beneficial.

California, Nevada↗
USGS2004

Nest survival estimation: A review of alternatives to the Mayfield estimator

Reliable estimates of nest survival are essential for assessing strategies for avian conservation. We review the history of modifications and alternatives for estimating nest survival, with a focus on four techniques: apparent nest success, the Mayfield estimator, the Stanley method, and program MARK. The widely used Mayfield method avoids the known positive bias inherent in apparent nest success by estimating daily survival rates using the number of exposure days, eliminating the need to monitor nests from initiation. Concerns that some of Mayfield's assumptions were restrictive stimulated the development of new techniques. Stanley's method allows for calculation of stage-specific daily survival rates when transition and failure dates are unknown, and eliminates Mayfield's assumption that failure occurred midway through the nest-check interval. Program MARK obviates Mayfield's assumption of constant daily survival within nesting stages and evaluates variation in nest survival as a function of biologically relevant factors. These innovative methods facilitate the evaluation of nest survival using an information-theoretic approach. We illustrate use of these methods with Lark Bunting ( Calamospiza melanocorys ) nest data from the Pawnee National Grassland, Colorado. Nest survival estimates calculated using Mayfield, Stanley, and MARK methods were similar, but apparent nest success estimates ranged 1– 24% greater than the other estimates. MARK analysis revealed that survival of Lark Bunting nests differed between site–year groups, declined with both nest age and time in season, but did not vary with weather parameters. We encourage researchers to use these approaches to gain reliable and meaningful nest survival estimates.

The Condor↗
USGS2011

Implementing telemetry on new species in remote areas: Recommendations from a large-scale satellite tracking study of African waterfowl

We provide recommendations for implementing telemetry studies on waterfowl on the basis of our experience in a tracking study conducted in three countries of sub-Saharan Africa. The aim of the study was to document movements by duck species identified as priority candidates for the potential spread of avian influenza. Our study design included both captive and field test components on four wild duck species (Garganey, Comb Duck, White-faced Duck and Fulvous Duck). We used our location data to evaluate marking success and determine when signal loss occurred. The captive study of eight ducks marked with non-working transmitters in a zoo in Montpellier, France, prior to fieldwork showed no evidence of adverse effects, and the harness design appeared to work well. The field study in Malawi, Nigeria and Mali started in 2007 on 2 February, 6 February and 14 February, and ended on 22 November 2007 (288 d), 20 January 2010 (1 079 d), and 3 November 2008 (628 d), respectively. The field study indicated that 38 of 47 (81%) of the platform transmitter terminals (PTTs) kept transmitting after initial deployment, and the transmitters provided 15 576 locations. Signal loss during the field study was attributed to three main causes: PTT loss, PTT failure and mortality (natural, human-caused and PTT-related). The PTT signal quality varied by geographic region, and interference caused signal loss in the Mediterranean Sea region. We recommend careful attention at the beginning of the study to determine the optimum timing of transmitter deployment and the number of transmitters to be deployed per species. These sample sizes should be calculated by taking into account region-specific causes of signal loss to ensure research objectives are met. These recommendations should be useful for researchers undertaking a satellite tracking program, especially when working in remote areas of Africa where logistics are difficult or with poorly-known species. ?? NISC (Pty) Ltd.

Ostrich↗
USGS1986

Lethal Dietary Toxicities of Environmental Contaminants and Pesticides to Coturnix

Five-day subacute dietary toxicity tests of 193 potential environmental contaminants, pesticides, organic solvents, and various adjuvants are presented for young coturnix (Japanese quail, Coturnix japonica Temminck and Schlegel). The report provides the most comprehensive data base available for avian subacute dietary toxicity tests and is primarily intended for use in ranking toxicities by a standard method that has a reasonable degree of environmental relevance. Findings are presented in two parts: Part I is a critique of selected drugs that includes discussion of subacute toxicity in relation to chemical class and structure, pesticide formulation, and age of animals; Part II is a summary of toxicologic findings for each test substance and provides a statistically basis for comparing toxicities. Data presented include the median lethal concentration (LC50), slope of the probit regression curve (dose-response curve), response chronology, and food consumption. We observed that: 1) fewer than 15% of the compounds were classed 'very' or 'highly' toxic (i.e, LC50 < 200 ppm) and all of these were either chlorinated hydrocarbons, organophosphates, or organometallics; 2) subacute toxicity may vary widely among structurally similar chemicals and between different formulations of the same chemical; therefore, conclusions about lethal hazard must be made cautiously until the actual formulation of inset has been tested: 3) inclusion of a general standard in each battery of tests is useful for detection of atypical trials and monitoring population changes but should not be used indiscriminantly for adjusting LC50's for intertest differences unless the chemicals of concern and the standard elicit their toxicities through the same action; 4) although other species have been tested effectively under the subacute protocol, coturnix were ideal for the stated purpose of this research because they are inexpensive, well-adapted to the laboratory environment, and yield good intertest reproducibility of response.

Fish and Wildlife Technical Report↗
USGS2011

Links between type E botulism outbreaks, lake levels, and surface water temperatures in Lake Michigan, 1963-2008

Relationships between large-scale environmental factors and the incidence of type E avian botulism outbreaks in Lake Michigan were examined from 1963 to 2008. Avian botulism outbreaks most frequently occurred in years with low mean annual water levels, and lake levels were significantly lower in outbreak years than in non-outbreak years. Mean surface water temperatures in northern Lake Michigan during the period when type E outbreaks tend to occur (July through September) were significantly higher in outbreak years than in non-outbreak years. Trends in fish populations did not strongly correlate with botulism outbreaks, although botulism outbreaks in the 1960s coincided with high alewife abundance, and recent botulism outbreaks coincided with rapidly increasing round goby abundance. Botulism outbreaks occurred cyclically, and the frequency of outbreaks did not increase over the period of record. Climate change scenarios for the Great Lakes predict lower water levels and warmer water temperatures. As a consequence, the frequency and magnitude of type E botulism outbreaks in the Great Lakes may increase.

Illinois, Indiana, Michigan, Wisconsin↗
USGS2015

Preliminary characterization of digestive enzymes in freshwater mussels

Resource managers lack an effective chemical tool to control the invasive zebra mussel Dreissena polymorpha . Zebra mussels clog water intakes for hydroelectric companies, harm unionid mussel species, and are believed to be a reservoir of avian botulism. Little is known about the digestive physiology of zebra mussels and unionid mussels. The enzymatic profile of the digestive glands of zebra mussels and native threeridge ( Amblema plicata ) and plain pocketbook mussels ( Lampsilis cardium ) are characterized using a commercial enzyme kit, api ZYM, and validated the kit with reagent-grade enzymes. A linear correlation was shown for only one of nineteen enzymes, tested between the api ZYM kit and a specific enzyme kit. Thus, the api ZYM kit should only be used to make general comparisons of enzyme presence and to observe trends in enzyme activities. Enzymatic trends were seen in the unionid mussel species, but not in zebra mussels sampled 32 days apart from the same location. Enzymatic classes, based on substrate, showed different trends, with proteolytic and phospholytic enzymes having the most change in relative enzyme activity.

Journal of Shellfish Research↗
USGS2006

Palila Restoration: Lessons from Long-term Research

BACKGROUND The palila (Loxioides bailleui) is a member of the Hawaiian honeycreeper family of birds (Drepanidinae), which is renowned for the profusion of species - many with bizarre bills and specialized feeding habits - that radiated from a single ancestral type. Most of the 57 or so honeycreeper species are extinct, and the palila is endangered because of its high degree of dependence on the mamane tree (Sophora chrysophylla) (Figure 1) and its restricted distribution on the upper slopes of Mauna Kea (Figure 2). Three decades of research have revealed many important facts about palila, providing the foundation and impetus for conservation programs in the wild and captivity. Additionally, an ambitious public conservation campaign arose due to the land-use conflicts on Mauna Kea. Here we summarize progress in palila conservation biology and outline steps that might overcome the remaining major challenges to its recovery. We also highlight lessons learned from palila research that may help the recovery of other Hawaiian forest birds. Palila and two closely-related species on the tiny islands of Nihoa and Laysan are the last of the seed-eating honeycreeper species in the Hawaiian Islands. About a quarter of the honeycreeper species known from living and fossil specimens had finch-like bills suited mainly for eating seeds and fruits. Because of their dietary specialization, palila are vulnerable to changes in forest size and quality, as was also likely the case for extinct species of seed specialists. Palila and many other forest bird species were once distributed in dry, lowland forests. Fossil records indicate that palila also occurred in the lowlands of O`ahu and Kaua`i until human settlement of those islands. However, because lowland habitats have been highly modified by humans and because mamane occurs today primarily at high elevation, palila are the only native bird species found exclusively in dry, subalpine habitat (2000?2850 m). Similar to other feeding specialists, palila lay few eggs, raise few young each year, and take a relatively long time to complete the nesting cycle. Low rates of reproduction result in low rates of population growth and low potential for recovery from disturbances. Long-term studies of palila offer important insights into the conservation biology of all Hawaiian forest bird species, particularly feeding specialists like the palila. Palila face many challenges common to both generalist and specialist Hawaiian honeycreeper species. Habitat loss and degradation, as well as introduced avian diseases, have reduced their numbers and limited their distribution to a very small portion of their historic range. Introduced mammals prey on palila, while alien insects reduce caterpillars that are particularly important in the diet of nestlings. Securing legal protection and funding for palila restoration has been challenging. Understanding how the palila has avoided extinction can help managers plan its recovery, and better design recovery plans for species with different feeding strategies in other habitats.

Fact Sheet↗
USGS2015

Cyclic avian mass mortality in the northeastern United States is associated with a novel orthomyxovirus

Since 1998, cyclic mortality events in common eiders ( Somateria mollissima ), numbering in the hundreds to thousands of dead birds, have been documented along the coast of Cape Cod, Massachusetts, USA. Although longitudinal disease investigations have uncovered potential contributing factors responsible for these outbreaks, detecting a primary etiological agent has proven enigmatic. Here we identify a novel orthomyxovirus, tentatively named Wellfleet Bay virus (WFBV), as a potential causative agent of these outbreaks. Genomic analysis of WFBV revealed that it is most closely related to members of the Quaranjavirus genus within the family Orthomyxoviridae . Similar to other members of the genus, WFBV contains an alphabaculovirus gp64-like glycoprotein, which was demonstrated to have fusion activity, and also tentatively suggests that ticks (and/or insects) may vector the virus in nature. However, in addition to the six RNA segments encoding the prototypical structural proteins identified in other quaranjaviruses, a previously unknown RNA segment (segment 7) encoding a novel protein designated as VP7 was discovered in WFBV. Although WFBV shows low to moderate levels of sequence similarity to Quaranfil virus and Johnston Atoll virus , the original members of the Quaranjavirus genus, additional antigenic and genetic analyses demonstrated that it is closely related to the recently identified Cygnet River virus (CyRV) from South Australia, suggesting that WFBV and CyRV may be geographic variants of the same virus. Although the identification of WFBV in part may resolve the enigma of these mass mortality events, the details of the ecology and epidemiology of the virus remain to be determined. Importance The emergence or reemergence of viral pathogens resulting in large-scale outbreaks of disease in humans and/or animals is one of the most important challenges facing biomedicine. For example, understanding how orthomyxoviruses such as novel influenza A virus reassortants and/or mutants emerge to cause epidemic or pandemic disease is at the forefront of current global health concerns. Here we describe the emergence of a novel orthomyxovirus, Wellfleet Bay virus (WFBV), which has been associated with cyclic large-scale bird die-offs in the northeastern United States. This initial characterization study provides a foundation for further research into the evolution, epidemiology, and ecology of newly emerging orthomyxoviruses, such as WFBV, and their potential impacts on animal and/or human health.

Massachusets↗