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At least 253 records · Page 14Linked to original sources

USGS2012

Expanding biological data standards development processes for US IOOS: visual line transect observing community for mammal, bird, and turtle data

The US Integrated Ocean Observing System (IOOS) has recently adopted standards for biological core variables in collaboration with the US Geological Survey/Ocean Biogeographic Information System (USGS/OBIS-USA) and other federal and non-federal partners. In this Community White Paper (CWP) we provide a process to bring into IOOS a rich new source of biological observing data, visual line transect surveys, and to establish quality data standards for visual line transect observations, an important source of at-sea bird, turtle and marine mammal observation data. The processes developed through this exercise will be useful for other similar biogeographic observing efforts, such as passive acoustic point and line transect observations, tagged animal data, and mark-recapture (photo-identification) methods. Furthermore, we suggest that the processes developed through this exercise will serve as a catalyst for broadening involvement by the larger marine biological data community within the goals and processes of IOOS.

Conference Paper↗

USGS2016

Integrated water flow model and modflow-farm process: A comparison of theory, approaches, and features of two integrated hydrologic models

Effective modeling of conjunctive use of surface and subsurface water resources requires simulation of land use-based root zone and surface flow processes as well as groundwater flows, streamflows, and their interactions. Recently, two computer models developed for this purpose, the Integrated Water Flow Model (IWFM) from the California Department of Water Resources and the MODFLOW with Farm Process (MF-FMP) from the US Geological Survey, have been applied to complex basins such as the Central Valley of California. As both IWFM and MFFMP are publicly available for download and can be applied to other basins, there is a need to objectively compare the main approaches and features used in both models. This paper compares the concepts, as well as the method and simulation features of each hydrologic model pertaining to groundwater, surface water, and landscape processes. The comparison is focused on the integrated simulation of water demand and supply, water use, and the flow between coupled hydrologic processes. The differences in the capabilities and features of these two models could affect the outcome and types of water resource problems that can be simulated.

California Natural Resources Agency↗

USGS2017

Permafrost-related processes and recent response to climatic changes

Permafrost-related processes have direct and indirect consequences to northern environments, but the impacts are affected by complex interactions involving positive and negative feedbacks at the surface (Jorgenson et al. 2010), climatic trends and fluctuations (Romanovsky et al. 2010; Konishchev 2011), and terrain and ground ice conditions (French and Shur 2010, Ukraintseva et al. 2012; Murton 2013). The degradation (reduction of thickness and/or lateral extent) of permafrost and the related disturbance of the surface are associated with a diverse set of processes such as thermokarst (the thawing of ice-rich permafrost or the melting of massive ice followed by subsidence of the ground surface and potential formation of a water body), thermal erosion (downwearing from moving water), thermal abrasion (backwearing from moving water), and thermal denudation associated with hillslope processes (downslope movement of soil or rock, such as frost creep, solifluction and cryogenic landslides including active-layer detachments and retrogressive thaw slumps). At the same time, the aggradation of permafrost and related processes (e.g., frost heave and formation of ice wedges and pingos) are still occurring during the observed climatic warming trend in the northern hemisphere. For example, the drainage of thermokarst lakes expose taliks (unfrozen ground beneath the water body) to the negative mean-annual ground surface temperatures in the continuous and discontinuous permafrost zone, which results in talik freezing accompanied by accumulation of ground ice. Both permafrost aggradation and degradation associated with thermokarst and other thaw-related features requires further observation and study to determine the pan-Arctic response of the landscape to climatic trends and fluctuations.

Book chapter↗

USGS2016

Combined use of isotopic and hydrometric data to conceptualize ecohydrological processes in a high-elevation tropical ecosystem

Few high-elevation tropical catchments worldwide are gauged and even fewer are studied using combined hydrometric and isotopic data. Consequently, we lack information needed to understand processes governing rainfall-runoff dynamics and to predict their influence on downstream ecosystem functioning. To address this need, we present a combination of hydrometric and water stable isotopic observations in the wet Andean páramo ecosystem of the Zhurucay Ecohydrological Observatory (7.53 km2). The catchment is located in the Andes of south Ecuador between 3400 and 3900 m a.s.l. Water samples for stable isotopic analysis were collected during 2 years (May 2011 – May 2013), while rainfall and runoff measurements were continuously recorded since late 2010. The isotopic data reveal that Andosol soils predominantly situated on hillslopes drain laterally to Histosols (Andean páramo wetlands) mainly located at the valley bottom. Histosols, in turn, feed water to creeks and small rivers throughout the year, establishing hydrologic connectivity between wetlands and the drainage network. Runoff is primarily comprised of pre-event water stored in the Histosols, which is replenished by rainfall that infiltrates through the Andosols. Contributions from the mineral horizon and the top of the fractured bedrock are small and only seem to influence discharge in small catchments during low flow generation (non-exceedance flows < Q35). Variations in source contributions are controlled by antecedent soil moisture, rainfall intensity, and duration of rainy periods. Saturated hydraulic conductivity of the soils, higher than the year-round low precipitation intensity, indicates that Hortonian overland flow rarely occurs during high intensity precipitation events. Deep groundwater contributions to discharge seem to be minimal. These results suggest that, in this high-elevation tropical ecosystem: 1) subsurface flow is a dominant hydrological process and 2) (Histosols) wetlands are the major source of stream runoff. Our study highlights that detailed isotopic characterization during short time periods provides valuable information about ecohydrological processes in regions where very few basins are gauged.

Zhurucay River Ecohydrological Observatory↗

USGS2024

Evaluating a process-guided deep learning approach for predicting dissolved oxygen in streams

Dissolved oxygen (DO) is a critical water quality constituent that governs habitat suitability for aquatic biota, biogeochemical reactions and solubility of metals in streams. Recently introduced high-frequency sensors have increased our ability to measure DO, but we still lack the capacity to understand and predict DO concentrations at high spatial resolutions or in unmonitored locations. Machine learning (ML) has been a commonly used approach for modelling DO, however, conventional ML models have no representation of the limnological processes governing DO dynamics. Here we implement and evaluate two process-guided deep learning (PGDL) approaches for predicting daily minimum, mean and maximum DO concentrations in rivers from the Delaware River Basin, USA. In both cases, a multi-task approach was taken in which the PGDL models predicted stream metabolism and gas exchange rates in addition to the DO concentrations themselves. Our results showed that for these sites, the PGDL approaches did not improve upon baseline predictions in temporal and spatially similar holdout experiments. One of the approaches did, however, improve predictions when applied to spatially dissimilar sites. Although this particular PGDL approach did not improve predictive accuracy in most cases, our results suggest that process guidance, perhaps a more constrained approach, could benefit a data-driven DO model.

Hydrological Processes↗

USGS2013

Fate of process solution cyanide and nitrate at three Nevada gold mines inferred from stable carbon and nitrogen isotope measurements

Stable isotope methods have been used to identify the mechanisms responsible for cyanide consumption at three heap-leach operations that process Carlin-type gold ores in Nevada, U.S.A. The reagent cyanide had δ 15 N values ranging from -5 to -2‰ and δ 13C values from -60 to -35‰. The wide δ 13 C range reflects the use by different suppliers of isotopically distinct natural-gas feedstocks and indicates that isotopes may be useful in environmental studies where there is a need to trace cyanide sources. In heap-leach circuits displaying from 5 to 98% consumption of cyanide, barren-solution and pregnant-solution cyanide were isotopically indistinguishable. The similarity is inconsistent with cyanide loss predominantly by HCN offgassing (a process that in laboratory experiments caused substantial isotopic changes), but it is consistent with cyanide retention within the heaps as solids, a process that caused minimal isotopic changes in laboratory simulations, or with cyanide oxidation, which also appears to cause minimal changes. In many pregnant solutions cyanide was carried entirely as metal complexes, which is consistent with ferrocyanides having precipitated or cyano-complexes having been adsorbed within the heaps. It is inferred that gaseous cyanide emissions from operations of this type are less important than has generally been thought and that the dissolution or desorption kinetics of solid species is an important control on cyanide elution when the spent heaps undergo rinsing. Nitrate, nitrite and ammonium had δ 15 N values of 1-16‰. The data reflect isotopic fractionation during ammonia offgassing or denitrification of nitrate–particularly in reclaim ponds–but do not indicate the extent to which nitrate is derived from cyanide or from explosive residues.

Nevada↗

USGS2006

Unsaturated zone flow processes

Water flow in the unsaturated zone is greatly influenced by unsaturated hydrostatics (water content, energy, pressure, and retention) and by unsaturated hydrodynamics (diffuse flow and preferential flow). Important multiphase processes include the transport of gases, nonaqueous liquids, and solid particles. Numerous means are available for determination of unsaturated conditions and properties, both measurement (of moisture state, water retention, and dynamic characteristics) and through various formulas and models that are mostly empirical in nature, but in some cases incorporating insight into unsaturated‐zone physical processes. Applications to practical problems include models and techniques relating to distributions of water and energy, fluxes at the land surface, inputs, outputs, and fluxes within the unsaturated zone, all of which are frequently complicated by heterogeneity and preferential flow. Further scientific advance requires new measurement techniques and theoretical constructs that more adequately represent the important physical processes within practical modeling schemes.

Book chapter↗

USGS2014

Preslip and cascade processes initiating laboratory stick slip

Recent modeling studies have explored whether earthquakes begin with a large aseismic nucleation process or initiate dynamically from the rapid growth of a smaller instability in a “cascade-up” process. To explore such a case in the laboratory, we study the initiation of dynamic rupture (stick slip) of a smooth saw-cut fault in a 76mm diameter cylindrical granite laboratory sample at 40–120MPa confining pressure. We use a high dynamic range recording system to directly compare the seismic waves radiated during the stick-slip event to those radiated from tiny (M _6) discrete seismic events, commonly known as acoustic emissions (AEs), that occur in the seconds prior to each large stick slip. The seismic moments, focal mechanisms, locations, and timing of the AEs all contribute to our understanding of their mechanics and provide us with information about the stick-slip nucleation process. In a sequence of 10 stick slips, the first few microseconds of the signals recorded from stick-slip instabilities are nearly indistinguishable from those of premonitory AEs. In this sense, it appears that each stick slip begins as an AE event that rapidly (~20 μs) grows about 2 orders of magnitude in linear dimension and ruptures the entire 150mm length of the simulated fault. We also measure accelerating fault slip in the final seconds before stick slip. We estimate that this slip is at least 98% aseismic and that it both weakens the fault and produces AEs that will eventually cascade-up to initiate the larger dynamic rupture.

Journal of Geophysical Research B: Solid Earth↗

USGS2016

Processes of multibathyal aragonite undersaturation in the Arctic Ocean

During 3 years of study (2010–2012), the western Arctic Ocean was found to have unique aragonite saturation profiles with up to three distinct aragonite undersaturation zones. This complexity is produced as inflow of Atlantic-derived and Pacific-derived water masses mix with Arctic-derived waters, which are further modified by physiochemical and biological processes. The shallowest aragonite undersaturation zone, from the surface to ∼30 m depth is characterized by relatively low alkalinity and other dissolved ions. Besides local influence of biological processes on aragonite undersaturation of shallow coastal waters, the nature of this zone is consistent with dilution by sea-ice melt and invasion of anthropogenic CO 2 from the atmosphere. A second undersaturated zone at ∼90–220 m depth (salinity ∼31.8–35.4) occurs within the Arctic Halocline and is characterized by elevated p CO 2 and nutrients. The nature of this horizon is consistent with remineralization of organic matter on shallow continental shelves bordering the Canada Basin and the input of the nutrients and CO 2 entrained by currents from the Pacific Inlet. Finally, the deepest aragonite undersaturation zone is at greater than 2000 m depth and is controlled by similar processes as deep aragonite saturation horizons in the Atlantic and Pacific Oceans. The comparatively shallow depth of this deepest aragonite saturation horizon in the Arctic is maintained by relatively low temperatures, and stable chemical composition. Understanding the mechanisms controlling the distribution of these aragonite undersaturation zones, and the time scales over which they operate will be crucial to refine predictive models.

Journal of Geophysical Research: Oceans↗

USGS2022

Gaussian process forecasts Pseudogymnoascus destructans will cover coterminous United States by 2030

White-nose syndrome has been decimating populations of several bat species since its first occurrence in the Northeastern United States in the winter 2006–2007. The spread of the disease has been monitored across the continent through the collaboration of many organizations. Inferring the rate of spread of the disease and predicting its arrival at new locations is critical when assessing the current and predicting the future status and trends of bat species. We developed a model of disease spread that simultaneously achieves high-predictive performance, computational efficiency, and interpretability. We modeled white-nose syndrome spread using Gaussian process variations to infer the spread rate of the disease front, identify areas of anomalous time of arrival, and provide future forecasts of the expected time of arrival throughout North America. Cross-validation of model predictive performance identified a stationary Gaussian process without an additional residual error process as the best-supported model. Results indicated that white-nose syndrome is likely to spread throughout the entire continental United States by 2030. These annually updatable model predictions will be useful in determining the horizon over which disease management actions must take place as well as in status and trend assessments of disease-affected bats.

Ecology and Evolution↗

USGS2021

Understanding the future of big sagebrush regeneration: challenges of projecting complex ecological processes

Regeneration is an essential demographic step that affects plant population persistence, recovery after disturbances, and potential migration to track suitable climate conditions. Challenges of restoring big sagebrush ( Artemisia tridentata ) after disturbances including fire-invasive annual grass interactions exemplify the need to understand the complex regeneration processes of this long-lived, woody species that is widespread across the semiarid western U.S. Projected 21st century climate change is expected to increase drought risks and intensify restoration challenges. A detailed understanding of regeneration will be crucial for developing management frameworks for the big sagebrush region in the 21st century. Here, we used two complementary models to explore spatial and temporal relationships in the potential of big sagebrush regeneration representing (1) range-wide big sagebrush regeneration responses in natural vegetation (process-based model) and (2) big sagebrush restoration seeding outcomes following fire in the Great Basin and the Snake River Plains (regression-based model). The process-based model suggested substantial geographic variation in long-term regeneration trajectories with central and northern areas of the big sagebrush region remaining climatically suitable, whereas marginal and southern areas are becoming less suitable. The regression-based model suggested, however, that restoration seeding may become increasingly more difficult, illustrating the particularly difficult challenge of promoting sagebrush establishment after wildfire in invaded landscapes. These results suggest that sustaining big sagebrush on the landscape throughout the 21st century may climatically be feasible for many areas and that uncertainty about the long-term sustainability of big sagebrush may be driven more by dynamics of biological invasions and wildfire than by uncertainty in climate change projections. Divergent projections of the two models under 21st century climate conditions encourage further study to evaluate potential benefits of re-creating conditions of uninvaded, unburned natural big sagebrush vegetation for post-fire restoration seeding, such as seeding in multiple years and, for at least much of the northern Great Basin and Snake River Plains, the control of the fire-invasive annual grass cycle.

Ecosphere↗

USGS2018

Monitoring dynamic spatio-temporal ecological processes optimally

Population dynamics vary in space and time. Survey designs that ignore these dynamics may be inefficient and fail to capture essential spatio‐temporal variability of a process. Alternatively, dynamic survey designs explicitly incorporate knowledge of ecological processes, the associated uncertainty in those processes, and can be optimized with respect to monitoring objectives. We describe a cohesive framework for monitoring a spreading population that explicitly links animal movement models with survey design and monitoring objectives. We apply the framework to develop an optimal survey design for sea otters in Glacier Bay. Sea otters were first detected in Glacier Bay in 1988 and have since increased in both abundance and distribution; abundance estimates increased from 5 otters to >5,000 otters, and they have spread faster than 2.7 km/yr. By explicitly linking animal movement models and survey design, we are able to reduce uncertainty associated with forecasting occupancy, abundance, and distribution compared to other potential random designs. The framework we describe is general, and we outline steps to applying it to novel systems and taxa.

Ecology↗

USGS2019

Nonlinear reaction–diffusion process models improve inference for population dynamics

Partial differential equations (PDEs) are a useful tool for modeling spatiotemporal dynamics of ecological processes. However, as an ecological process evolves, we need statistical models that can adapt to changing dynamics as new data are collected. We developed a model that combines an ecological diffusion equation and logistic growth to characterize colonization processes of a population that establishes long-term equilibrium over a heterogeneous environment. We also developed a homogenization strategy to statistically upscale the PDE for faster computation and adopted a hierarchical framework to accommodate multiple data sources collected at different spatial scales. We highlighted the advantages of using a logistic reaction component instead of a Malthusian component when population growth demonstrates asymptotic behavior. As a case study, we demonstrated that our model improves spatiotemporal abundance forecasts of sea otters in Glacier Bay, Alaska. Furthermore, we predicted spatially varying local equilibrium abundances as a result of environmentally driven diffusion and density-regulated growth. Integrating equilibrium abundances over the study area in our application enabled us to infer the overall carrying capacity of sea otters in Glacier Bay, Alaska.

Alaska↗

USGS2021

Integrating ecosystem metabolism and consumer allochthony reveals nonlinear drivers in lake organic matter processing

Lakes process both terrestrial and aquatic organic matter, and the relative contribution from each source is often measured via ecosystem metabolism and terrestrial resource use in the food web (i.e., consumer allochthony). Yet, ecosystem metabolism and consumer allochthony are rarely considered together, despite possible interactions and potential for them to respond to the same lake characteristics. In this study, we compiled global datasets of lake gross primary production (GPP), ecosystem respiration (ER), and zooplankton allochthony to compare the strength and shape of relationships with physicochemical characteristics across a broad set of lakes. GPP was positively related to total phosphorus (TP) in lakes with intermediate TP concentrations (11–75 μ g L −1 ) and was highest in lakes with intermediate dissolved organic carbon (DOC) concentrations. While ER and GPP were strongly positively correlated, decoupling occurred at high DOC concentrations. Lastly, allochthony had a unimodal relationship with TP and related variably to DOC. By integrating metabolism and allochthony, we identified similar change points in GPP and zooplankton allochthony at intermediate DOC (4.5–10 mg L −1 ) and TP (8–20 μ g L −1 ) concentrations, indicating that allochthony and GPP may be coupled and inversely related. The ratio of DOC:nutrients also helped to identify conditions where lake organic matter processing responded more to autochthonous or allochthonous organic matter sources. As lakes globally face eutrophication and browning, predicting how lake organic matter processing will respond requires an updated paradigm that incorporates nonlinear dynamics and interactions.

Limnology and Oceanography↗

USGS2013

Temporal dynamics of biogeochemical processes at the Norman Landfill site

The temporal variability observed in redox sensitive species in groundwater can be attributed to coupled hydrological, geochemical, and microbial processes. These controlling processes are typically nonstationary, and distributed across various time scales. Therefore, the purpose of this study is to investigate biogeochemical data sets from a municipal landfill site to identify the dominant modes of variation and determine the physical controls that become significant at different time scales. Data on hydraulic head, specific conductance, δ2H, chloride, sulfate, nitrate, and nonvolatile dissolved organic carbon were collected between 1998 and 2000 at three wells at the Norman Landfill site in Norman, OK. Wavelet analysis on this geochemical data set indicates that variations in concentrations of reactive and conservative solutes are strongly coupled to hydrologic variability (water table elevation and precipitation) at 8 month scales, and to individual eco-hydrogeologic framework (such as seasonality of vegetation, surface-groundwater dynamics) at 16 month scales. Apart from hydrologic variations, temporal variability in sulfate concentrations can be associated with different sources (FeS cycling, recharge events) and sinks (uptake by vegetation) depending on the well location and proximity to the leachate plume. Results suggest that nitrate concentrations show multiscale behavior across temporal scales for different well locations, and dominant variability in dissolved organic carbon for a closed municipal landfill can be larger than 2 years due to its decomposition and changing content. A conceptual framework that explains the variability in chemical concentrations at different time scales as a function of hydrologic processes, site-specific interactions, and/or coupled biogeochemical effects is also presented.

Oklahoma↗

USGS1998

Using transport model interpretations of tracer tests to study microbial processes in groundwater

It has long been known that microorganisms affect the geochemistry of groundwater. But despite this recognition, little detailed information is available regarding the rates and the factors controlling microbial processes in groundwater. Part of the reason stems from the relatively inaccessible nature of most groundwater and the difficulties encountered in obtaining representative samples of groundwater and subsurface sediments. At the same time, most groundwater systems are nutrient poor or oligotrophic environments in which the resident microorganisms are severely stressed and often nearly inactive. These populations are functioning so slowly that many types of activity measurements designed to assess microbial processes in more productive environments are ineffective for groundwater. However, because groundwater is by far the largest reservoir of freshwater in the world ( Freeze and Cherry 1979 ), our lack of knowledge about groundwater microorganisms and their processes represents a significant void in the study of microbial ecology and in our ability to predict the outcome when these reserves are compromised by contamination.

Book chapter↗

USGS2020

On the use of statistical analysis to understand submarine landslide processes and assess their hazard

Because of their inaccessibility, submarine landslides are typically studied individually and at great effort and expense to provide knowledge of the specific site conditions where these landslides occur. Statistical analysis of submarine landslide scars can offer generalized perspectives on the processes that initiate submarine landslides and can help toward hazard assessment in areas that have not been studied in detail. The following review discusses more than a decade of development of statistical approaches to studying submarine landslides. Landslides were previously viewed together with other natural hazards, such as earthquakes and fires, as a phenomenon whose size distribution obeys an inverse power law. Inverse power law distributions are the result of self-organized avalanche processes, in which the final hazard size cannot be predicted at the onset of the disturbance. We find that volume and area distributions of submarine landslides along the U.S. Atlantic continental slope and along nine other margins worldwide do not follow an inverse power law. Rigorous statistical tests of several different probability distribution models indicate that the lognormal model is most appropriate for these siliciclastic environments. Lognormal distributions can be simulated by assuming that the area of slope failure depends on earthquake magnitude, in other words, failure occurs simultaneously over the area affected by horizontal ground shaking and does not cascade from nucleating sources. Therefore, the maximum landslide size can be predicted from the earthquake magnitude and the distance from the rupturing fault. Moreover, earthquakes <~M4.5 cannot generate significant submarine landslides. We further demonstrate that empirical, offshore landslide hazard curves can be developed from these lognormal landslide size distributions, if the duration of mapped landslide activity is known. In addition to hazard estimation, scaling relationships can yield insights on the physical processes associated with landslide failure. For example, the log-log relationship between volume and area of landslide scars in siliciclastic margins is observed to be almost linear implying that most landslides are translational. Carbonate margins, in contrast, show a power-law distribution of scar volumes and their volume to area relationship is ~1.3. These results suggest that landslides in carbonate margins are governed by the random distributions of existing fissures, and they act like rock falls on land. Although earthquakes are the principal trigger of submarine landslides, the effects of earthquake frequency on slope stability can be counterintuitive. The average size of landslide scars decreases non-linearly with increasing frequency of earthquakes and increases with increasing sedimentation rate. The effect is interpreted as evidence for densification and shear strength increase of margin sediment, induced by repeated seismic shaking.

Book chapter↗

USGS2016

Assessment of canyon wall failure process from multibeam bathymetry and Remotely Operated Vehicle (ROV) observations, U.S. Atlantic continental margin

Over the last few years, canyons along the northern U.S. Atlantic continental margin have been the focus of intensive research examining canyon evolution, submarine geohazards, benthic ecology and deep-sea coral habitat. New high-resolution multibeam bathymetry and Remotely Operated Vehicle (ROV) dives in the major shelf-breaching and minor slope canyons, provided the opportunity to investigate the size of, and processes responsible for, canyon wall failures. The canyons cut through thick Late Cretaceous to Recent mixed siliciclastic and carbonate-rich lithologies which impart a primary control on the style of failures observed. Broad-scale canyon morphology across much of the margin can be correlated to the exposed lithology. Near vertical walls, sedimented benches, talus slopes, and canyon floor debris aprons were present in most canyons. The extent of these features depends on canyon wall cohesion and level of internal fracturing, and resistance to biological and chemical erosion. Evidence of brittle failure over different spatial and temporal scales, physical abrasion by downslope moving flows, and bioerosion, in the form of burrows and surficial scrape marks provide insight into the modification processes active in these canyons. The presence of sessile fauna, including long-lived, slow growing corals and sponges, on canyon walls, especially those affected by failure provide a critical, but as yet, poorly understood chronological record of geologic processes within these systems.

Book chapter↗