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At least 253 records · Page 14Linked to original sources
USGS2025

Science needs for determining the effects of climate change on harmful algal blooms in the southeastern United States

The Southeastern United States has many lakes, streams, and reservoirs that serve as important drinking water sources with recreational, agricultural, and ecological uses. However, harmful algal blooms (HABs) are becoming more common in these waters, causing health issues for humans and animals. HABs have been listed as a contaminant of emerging concern, and the magnitude, frequency, and duration of HABs appear to be increasing at the global scale. While it is well known that nutrients stimulate algae growth, it is not clear how climate change and other parameters stimulate the development of toxin production by HABs. The scientific literature describes parameters, such as storm occurrence, temperature, dissolved metals, erosion of soils, increasing length of growing season, discharge, and hydroperiod, that may affect algae growth and toxin production. Climate and hydrologic models address many of the physical and environmental parameters that influence HABs, but no climate models directly address HABs. This report compiles information from the existing literature pertaining to HABs and the modeling and forecasting of HABS. This compilation is done through the incorporation of climate change models. HAB research that involves climate change will require multiple disciplines that bring together ecologists, hydrologists, climatologists, engineers, economists, and new technology. Resource managers could use geographic data about the occurrence and distribution of HABs to develop models that identify waterbodies more vulnerable to HAB events. Development of such models will require teams capable of integrating biological, chemical, and physical factors. Model development will require additional research that can resolve anthropogenic and climate-related environmental factors to identify trends in freshwater HABs. The complexity and interconnectedness of the parameters that influence HAB occurrences will make model development challenging and require rigorous regional calibration.

Open-File Report↗
USGS2022

Acetylenotrophic and diazotrophic Bradyrhizobium sp. strain I71 from TCE-contaminated soils

Abstract Acetylene (C 2 H 2 ) is a molecule rarely found in nature, with very few known natural sources, but acetylenotrophic microorganisms can use acetylene as their primary carbon and energy source. As of 2018 there were 15 known strains of aerobic and anaerobic acetylenotrophs; however, we hypothesize there may yet be unrecognized diversity of acetylenotrophs in nature. This study expands the known diversity of acetylenotrophs by isolating the aerobic acetylenotroph, Bradyrhizobium sp. strain I71, from trichloroethylene (TCE)-contaminated soils. Strain I71 is a member of the class Alphaproteobacteria and exhibits acetylenotrophic and diazotrophic activities, the only two enzymatic reactions known to transform acetylene. This unique capability in the isolated strain may increase the genus’ economic impact beyond agriculture as acetylenotrophy is closely linked to bioremediation of chlorinated contaminants. Computational analyses indicate that the Bradyrhizobium sp. strain I71 genome contains 522 unique genes compared to close relatives. Moreover, applying a novel hidden Markov model of known acetylene hydratase (AH) enzymes identified a putative AH enzyme. Protein annotation with I-TASSER software predicted the AH from the microbe Syntrophotalea acetylenica as the closest structural and functional analog. Furthermore, the putative AH was flanked by horizontal gene transfer (HGT) elements, like that of AH in anaerobic acetylenotrophs, suggesting an unknown source of acetylene or acetylenic substrate in the environment that is selecting for the presence of AH. Importance The isolation of Bradyrhizobium strain I71 expands the distribution of acetylene-consuming microbes to include a group of economically important microorganisms. Members of Bradyrhizobium are well studied for their abilities to improve plant health and increase crop yields by providing bioavailable nitrogen. Additionally, acetylene-consuming microbes have been shown to work in tandem with other microbes to degrade soil contaminants. Based on genome, cultivation, and protein prediction analysis, the ability to consume acetylene is likely not widespread within the genus Bradyrhizobium . These findings suggest that the suite of phenotypic capabilities of strain I71 may be unique and make it a good candidate for further study in several research avenues.

California↗
USGS2003

Handbook of groundwater remediation using permeable reactive barriers: Applications to radionuclides, trace metals, and nutrients

Over the last century and a half, groundwaters have become contaminated by a growing number of organic and inorganic substances ranging from petroleum-derived hydrocarbons to radioactive compounds, to cancer-causing hexavalent chromium. The importance of uncontaminated groundwater for agriculture, human consumption, and the environmental health of ecosystems is paramount to the health and productivity of industrial society. Water scientists and managers are focused on developing cost-effective methods to reverse this trend. Several methodologies have been developed, however few are as cost-effective as the use of readily available materials, such as iron and organic compost, for absorbing and isolating contaminants within the matrix of a permeable barrier. The Handbook of Groundwater Remediation using Permeable Reactive Barriers presents readers with this latest technology and developments within four main sections: 1. Innovations in Design, Construction, and Evaluation of PRBs 2. Development of Reactive Materials 3. Evaluations of Chemical and Biological Processes 4. Case Studies of Permeable Reactive Barrier Installations The Handbook is one of the first references specifically on this topic. It is an excellent fit for graduate students entering this emerging field as well as professionals conducting research or implementing this technology.

Book↗
USGS2024

Economic losses to inland recreational fisheries from harmful algal blooms

This paper presents research on the recreational impacts of harmful algal blooms (HABs) and other water quality changes in the U.S. heartland. We examine the link between recreational fishing and water quality using a random utility model of reservoir choices, and data on effort and health-based advisories for reservoirs in Nebraska. We find that advisories linked specifically to algal blooms affect the demand for and value of fishing, and that these effects are heterogeneous. The estimated welfare loss at HAB-afflicted reservoirs is approximately $12 per trip, with larger losses experienced by gamefish-oriented and college-educated fishers.

Journal of Environmental Management↗
USGS2019

A General Lake Model (GLM 3.0) for linking with high-frequency sensor data from the Global Lake Ecological Observatory Network (GLEON)

The General Lake Model (GLM) is a one-dimensional open-source code designed to simulate the hydrodynamics of lakes, reservoirs, and wetlands. GLM was developed to support the science needs of the Global Lake Ecological Observatory Network (GLEON), a network of researchers using sensors to understand lake functioning and address questions about how lakes around the world respond to climate and land use change. The scale and diversity of lake types, locations, and sizes, and the expanding observational datasets created the need for a robust community model of lake dynamics with sufficient flexibility to accommodate a range of scientific and management questions relevant to the GLEON community. This paper summarizes the scientific basis and numerical implementation of the model algorithms, including details of sub-models that simulate surface heat exchange and ice cover dynamics, vertical mixing, and inflow–outflow dynamics. We demonstrate the suitability of the model for different lake types that vary substantially in their morphology, hydrology, and climatic conditions. GLM supports a dynamic coupling with biogeochemical and ecological modelling libraries for integrated simulations of water quality and ecosystem health, and options for integration with other environmental models are outlined. Finally, we discuss utilities for the analysis of model outputs and uncertainty assessments, model operation within a distributed cloud-computing environment, and as a tool to support the learning of network participants.

Geoscientific Model Development↗
USGS2026

Occurrence of cyanobacteria and associated cyanotoxins in the Raritan Basin Water Supply Complex, New Jersey, August 2020 to August 2021

Harmful algal blooms, particularly cyanobacteria harmful algal blooms (cyanoHABs), have emerged as a substantial global concern because of their detrimental effects on water quality and aquatic ecosystem health. CyanoHABs can produce cyanotoxins, which pose serious health risks to humans and wildlife, such as liver failure and respiratory distress. This is particularly concerning for water bodies that serve as drinking-water sources. Recent trends indicate an increase in the frequency and intensity of cyanoHABs globally. This study focuses on the Raritan Basin Water Supply Complex in New Jersey, where extensive monitoring was conducted from August 2020 to August 2021 to assess the presence of cyanobacteria and associated cyanotoxins. The research utilized a combination of discrete water-quality sampling, continuous monitoring, and solid phase adsorption toxin tracking (SPATT) to capture the dynamics of cyanotoxin occurrence and potential transport. Findings revealed a widespread presence of cyanobacteria and potential for cyanotoxin production, although actual cyanotoxin concentrations remained below drinking water and recreational thresholds. The study, conducted by the U.S. Geological Survey (USGS) in collaboration with the New Jersey Water Supply Authority (NJWSA) and the New Jersey Department of Environmental Protection (NJDEP), highlighted the limitations of traditional sampling methods and emphasized that continuous monitoring can support better understanding of how cyanoHAB conditions change over time and in different places. Genetic testing included quantitative polymerase chain reaction (qPCR) analyses, which demonstrated higher sensitivity, or increased findings of cyanobacteria compared to microscopy, indicating the potential for use in early warning systems. This research underscores that integrating various detection methods and hydrological data can enhance understanding of cyanotoxin dynamics in river systems.

New Jersey↗
USGS1990

Field manual for the investigation of fish kills

Preface Fish kills are graphic evidence of serious problems in a lake or stream. If the kill is related to the presence of toxic chemicals, there may be human health concerns, in addition to the obvious damage to the ecosystem and the fisheries resources. Depending on the cause of a fish kill, legal and economic ramifications may be involved. If the kill is cause by human or corporate actions, litigation is likely to follow, with possible court-awarded damages and assessed costs for cleanup and restoration. Federal and State agencies have expressed the need for a compendium of known and accepted methods and techniques that should be followed by anyone investigation a fish kill. This manual is an attempt to fill that need. It addresses the many facets involved in a fish kill investigation and provides instruction, guidance, examples, and sample forms that can be used. The U.S. Fish and Wildlife Service is pleased to provide this manual to help fisheries biologists and others prepare for a fish kill investigation. Research and Development (Region 8) has cooperated with the Division of Environmental Contaminants in Fish and Wildlife Enhancement to provide expertise and funds. We hope that the manual proves to be useful for interpreting evidence at the site of a fish kill, and corrective actions, and preparing for appearance as a court witness.

Resource Publication↗
USGS2000

Contaminant Hazard Reviews (compilation)

This compact disc (CD) contains the 35 reports in the Contaminant Hazard Reviews (CHR) that were published originally between 1985 and 1999 in the U.S. Department of the Interior Biological Report series. The CD was produced because printed supplies of these reviews--a total of 105,000--became exhausted and demand remained high. Each review was prepared at the request of environmental specialists of the U.S. Fish and Wildlife Service and each contained specific information on the following: mirex, cadmium, carbofuran, toxaphene, selenium, chromium, polychlorinated biphenyls, dioxins, diazinon, mercury, polycyclic aromatic hydrocarbons, arsenic, chlorpyrifos, lead, tin, index issue, pentachlorophenol, atrazine, molybdenum, boron, chlordane, paraquat, cyanide, fenvalerate, diflubenzuron, zinc, famphur, acrolein, radiation, sodium monofluoroacetate, planar PCBs, silver, copper, nickel, and a cumulative index to chemicals and species. Each report reviewed and synthesized the technical literature on a single contaminant and its effects on terrestrial plants and invertebrates, aquatic plants and animals, avian and mammalian wildlife, and other natural resources. The subtopics include contaminant sources and uses; physical, chemical, and metabolic properties; concentrations in field collections of abiotic materials and living organisms; deficiency effects, where appropriate; lethal and sublethal effects, including effects on survival, growth, reproduction, metabolism, mutagenicity, teratogenicity, and carcinogenicity; proposed criteria for the protection of human health and sensitive natural resources; and recommendations for additional research.

Contaminant Hazard Reviews↗
USGS1999

Trace elements in coal: Environmental and health significance

Trace elements can have profound adverse effects on the health of people burning coal in homes or living near coal deposits, coal mines, and coal-burning power plants. Trace elements such as arsenic emitted from coal-burning power plants in Europe and Asia have been shown to cause severe health problems. Perhaps the most widespread health problems are caused by domestic coal combustion in developing countries where millions of people suffer from fluorosis and thousands from arsenism. Better knowledge of coal quality characteristics may help to reduce some of these health problems. For example, information on concentrations and distributions of potentially toxic elements in coal may help delineate areas of a coal deposit to be avoided. Information on the modes of occurrence of these elements and the textural relations of the minerals in coal may help to predict the behavior of the potentially toxic trace metals during coal cleaning, combustion, weathering, and leaching.

Biological Trace Element Research↗
USGS2003

Workshop 3.5: Closing the gap between exposure and effects in monitoring studies

A major challenge to contaminant monitoring programs is the selection of an appropriate suite of measurements for assessing exposure and effects. Early monitoring programs relied solely on residue analysis to detect the organochlorine compounds that were in use at that time. A shift to the use of more transient, less persistent chemicals required that a new set of tools be developed to determine if an organism had been exposed. This led to the development of cellular and biochemical assays that could indicate the presence of these types of chemicals in biota and the environment. However, it was recognized that measures of contaminant presence alone were insufficient to assess the health of biota. As a result, considerable research began to be directed toward development of diagnostic tools for measuring chemical effects in fish and wildlife. Today, contaminant monitoring programs follow a paradigm for study design that emphasizes not only the use of measures of exposure, but also measures of effect. Using data from our monitoring and research studies for hormonally active substances, we discuss a variety of metrics of exposure and effects and their application to specific chemicals, and the current information gaps. We conclude that although several bioindicators of exposure and effect have been promoted and used, to date there continues to be a poor association between cause and effect for endocrine active substances. In part, this is due to the limited number of diagnostic tools that are available and to a lack of basic toxicological information concerning toxicokinetics and mechanisms of action of hormonally active chemicals in fish and wildlife species. In the foreseeable future, both tissue and environmental residue data, despite the many limitations, will continue to be an important component of monitoring programs for hormonally active chemicals as we continue to develop and validate more specific bioindicators of exposure and effects.

Pure and Applied Chemistry↗
USGS2019

Employing an ecosystem services framework to deliver decision ready science

Public land managers have limited information to allow for the integration and balancing of multiple objectives in land management decisions including the social (cultural and health), economic (monetary and nonmonetary), and environmental aspects. In this article, we document an approach to consider the many facets of decision making by incorporating them into a decision context using an ecosystem services framework. This analysis is based on a multi-partner project led by the US Geological Survey and the US Fish and Wildlife Service to provide land management decision support for the Great Dismal Swamp National Wildlife Refuge. It is an integrated ecologic-economic analysis of baseline (current) and potential future quantities, qualities, and values of selected ecosystem services from the Refuge. Alternative management scenarios are modeled to consider the impact of specific management actions or natural disturbances on priority ecosystem services. We examine the benefits and challenges of using this framework. Key lessons learned from this effort include the mismatch in timing between physical and social science; the challenge of integrating methods from multiple disciplines; the importance of frequent communication to overcome siloed research; and the utility of an integrating framework for ecosystem services and supporting tools such as the dynamic ecosystem model.

Advances in Ecological Research↗
USGS2009

A review of plague persistence with special emphasis on fleas

Sylvatic plague is highly prevalent during infrequent epizootics that ravage the landscape of western North America. During these periods, plague dissemination is very efficient. Epizootics end when rodent and flea populations are decimated and vectored transmission declines. A second phase (enzootic plague) ensues when plague is difficult to detect from fleas, hosts or the environment, and presents less of a threat to public health. Recently, researchers have hypothesized that the bacterium (Yersinia pestis) responsible for plague maintains a continuous state of high virulence and thus only changes in transmission efficiency explain the shift between alternating enzootic and epizootic phases. However, if virulent transmission becomes too inefficient, strong selection might favor an alternate survival strategy. Another plausible non-exclusive hypothesis, best supported from Asian field studies, is that Y. pestis persists (locally) at foci by maintaining a more benign relationship within adapted rodents during the long expanses of time between outbreaks. From this vantage, it can revert to the epizootic (transmission efficient) form. Similarly, in the United States (US), enzootic plague persistence has been proposed to develop sequestered within New World rodent carriers. However, the absence of clear support for rodent carriers in North America has encouraged a broader search for alternative explanations. A telluric plague existence has been proposed. However, the availability of flea life stages and their hosts could critically supplement environmental plague sources, or fleas might directly represent a lowlevel plague reservoir. Here, we note a potentially pivotal role for fleas. These epizootic plague vectors should be closely studied with newer more exacting methods to determine their potential to serve as participants in or accomplices to a plague persistence reservoir.

Journal of Vector Borne Diseases↗
USGS2022

Antibiotic resistance in free-ranging wildlife

In this chapter, we provide an overview of antimicrobial resistant (AMR) bacteria in wildlife through the presentation of general trends of occurrence among both captive and free-ranging wild animal populations, discussion of importance to human health and wildlife conservation, and identification of priority areas for future research and monitoring efforts. Once most commonly identified in humans and domestic animals, AMR bacteria have now been reported to be widespread among free-ranging and captive wildlife and the broader environment. Antimicrobial resistance has been identified in wildlife inhabiting nearly every country, region, and habitat type from which samples have been obtained, although occurrence may be more common in animals that occupy anthropogenically impacted environments. Though AMR bacteria identified in free-ranging wildlife have generally not been associated with direct health impacts to the host, specific bacteria and types of resistance found in wildlife may be clinically relevant to humans. Furthermore, AMR bacteria harbored by captive or free-ranging animals may complicate veterinary treatment of captive, rare, or vulnerable wildlife provided care. Future investigations may obtain important information on the acquisition and dissemination of AMR bacteria by wildlife through the comparison of resistance harbored by bacteria from wildlife and the environments they occupy. The identification of specific environmental pathways through which resistance may be acquired would help to guide the development of intervention strategies to interrupt further spread of antimicrobial resistance to, from, and among wildlife. Implications of such strategies may also extend more broadly to promote domestic animal, human, and environmental health.

Book chapter↗
USGS2020

Assessing the ecological risks of per‐ and polyfluoroalkyl substances: Current state‐of‐the science and a proposed path forward

Per‐ and poly‐fluoroalkyl substances (PFAS) encompass a large, heterogenous group of chemicals of potential concern to human health and the environment. Based on information for a few relatively well‐understood PFAS such as perfluorooctane sulfonate and perfluorooctanoate, there is ample basis to suspect that at least a subset can be considered persistent, bioaccumulative, and/or toxic. However, data suitable for determining risks in either prospective or retrospective assessments are lacking for the majority of PFAS. In August 2019, the Society of Environmental Toxicology and Chemistry sponsored a workshop that focused on the state‐of‐the‐science supporting risk assessment of PFAS. The present review summarizes discussions concerning the ecotoxicology and ecological risks of PFAS. First, we summarize currently available information relevant to problem formulation/prioritization, exposure, and hazard/effects of PFAS in the context of regulatory and ecological risk assessment activities from around the world. We then describe critical gaps and uncertainties relative to ecological risk assessments for PFAS and propose approaches to address these needs. Recommendations include the development of more comprehensive monitoring programs to support exposure assessment, an emphasis on research to support the formulation of predictive models for bioaccumulation, and the development of in silico, in vitro, and in vivo methods to efficiently assess biological effects for potentially sensitive species/endpoints. Addressing needs associated with assessing the ecological risk of PFAS will require cross‐disciplinary approaches that employ both conventional and new methods in an integrated, resource‐effective manner.

Environmental Toxicology and Chemistry↗
USGS2016

Science to support aquatic animal health

Healthy aquatic ecosystems are home to a diversity of plants, invertebrates, fish and wildlife. Aquatic animal populations face unprecedented threats to their health and survival from climate change, water shortages, habitat alteration, invasive species and environmental contaminants. These environmental stressors can directly impact the prevalence and severity of disease in aquatic populations. For example, periodic fish kills in the upper Chesapeake Bay Watershed are associated with many different opportunistic pathogens that proliferate in stressed fish populations. An estimated 80 percent of endangered juvenile Puget Sound steelhead trout die within two weeks of entering the marine environment, and a role for disease in these losses is being investigated. The introduction of viral hemorrhagic septicemia virus (VHSV) into the Great Lakes—a fishery worth an estimated 7 billion dollars annually—resulted in widespread fish die-offs and virus detections in 28 different fish species. Millions of dying sea stars along the west coast of North America have led to investigations into sea star wasting disease. U.S. Geological Survey (USGS) scientists are assisting managers with these issues through ecological investigations of aquatic animal diseases, field surveillance, and research to promote the development of mitigation strategies.

Fact Sheet↗
USGS2018

Regeneration of Salicaceae riparian forests in the Northern Hemisphere: A new framework and management tool

Human activities on floodplains have severely disrupted the regeneration of foundation riparian shrub and tree species of the Salicaceae family ( Populus and Salix spp.) throughout the Northern Hemisphere. Restoration ecologists initially tackled this problem from a terrestrial perspective that emphasized planting. More recently, floodplain restoration activities have embraced an aquatic perspective, inspired by the expanding practice of managing river flows to improve river health (environmental flows) . However, riparian Salicaceae species occupy floodplain and riparian areas, which lie at the interface of both terrestrial and aquatic ecosystems along watercourses . Thus, their regeneration depends on a complex interaction of hydrologic and geomorphic processes that have shaped key life-cycle requirements for seedling establishment . Ultimately, restoration needs to integrate these concepts to succeed. However, while regeneration of Salicaceae is now reasonably well-understood, the literature reporting restoration actions on Salicaceae regeneration is sparse, and a specific theoretical framework is still missing. Here, we have reviewed 105 peer-reviewed published experiences in restoration of Salicaceae forests, including 91 projects in 10 world regions, to construct a decision tree to inform restoration planning through explicit links between the well-studied biophysical requirements of Salicaceae regeneration and 17 specific restoration actions, the most popular being planting (in 55% of the projects), land contouring (30%), removal of competing vegetation (30%), site selection (26%), and irrigation (24%). We also identified research gaps related to Salicaceae forest restoration and discuss alternative, innovative and feasible approaches that incorporate the human component.

Journal of Environmental Management↗
USGS2009

Biogeochemical redox processes and their impact on contaminant dynamics

Life and element cycling on Earth is directly related to electron transfer (or redox) reactions. An understanding of biogeochemical redox processes is crucial for predicting and protecting environmental health and can provide new opportunities for engineered remediation strategies. Energy can be released and stored by means of redox reactions via the oxidation of labile organic carbon or inorganic compounds (electron donors) by microorganisms coupled to the reduction of electron acceptors including humic substances, iron-bearing minerals, transition metals, metalloids, and actinides. Environmental redox processes play key roles in the formation and dissolution of mineral phases. Redox cycling of naturally occurring trace elements and their host minerals often controls the release or sequestration of inorganic contaminants. Redox processes control the chemical speciation, bioavailability, toxicity, and mobility of many major and trace elements including Fe, Mn, C, P, N, S, Cr, Cu, Co, As, Sb, Se, Hg, Tc, and U. Redox-active humic substances and mineral surfaces can catalyze the redox transformation and degradation of organic contaminants. In this review article, we highlight recent advances in our understanding of biogeochemical redox processes and their impact on contaminant fate and transport, including future research needs.

Environmental Science & Technology↗
USGS2023

Effects of noise from oil and gas development on ungulates and small mammals—A science synthesis to inform National Environmental Policy Act analyses

The U.S. Geological Survey is working with Federal land management agencies to develop a series of science syntheses to support environmental effects analyses that agencies conduct to comply with the National Environmental Policy Act (NEPA). This report synthesizes science information about the potential effects of noise from oil and gas development on North American ungulates and small mammals, including rodents and leporids. We conducted a structured search of published scientific literature to find information about noise levels produced during oil and gas development, methods for analyzing sound propagation, the effects of noise on ungulates and small mammals, and measures to reduce noise emissions. We organized the sections of this synthesis to align with standard elements of NEPA analyses. We found that oil and gas development is a common source of human-caused noise on public lands and includes noise sources such as heavy construction and drilling machinery, long-term production machinery, truck traffic, and aircraft. Common techniques for predicting potential noise include field data collection using a sound level meter, inference from previously published data, and sound propagation modeling. A substantial body of research shows that human-caused noise can affect wildlife health and behavior, with variation in sensitivity to noise among species. Studies have shown consistent, detectable effects of noise on ungulates, but the amount of literature on ungulates is very small, and additional research could improve our understanding of differences in effects among species, seasons, and individual indicators of fitness. Several species of small mammals are dependent on audible signals for predator detection and communication, and noise has been shown to affect their vigilance and foraging behavior. However, other studies have documented no effects to rodents in noisy areas, and the effects of noise on small mammals may differ by species and study system. Techniques suggested in the literature for reducing noise emissions include sound barriers, seasonal and daily timing restrictions, traffic control measures, and siting infrastructure to take advantage of natural sound barriers. Public land managers can use this report by incorporating it by reference in NEPA documentation, as supplemental information, or as a general reference for literature about the effects of noise from oil and gas development on ungulates and small mammals.

Scientific Investigations Report↗