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At least 253 records · Page 14Linked to original sources
USGS2021

The consequences of dam passage for downstream-migrating American eel in the Penobscot River, Maine

American eel ( Anguilla rostrata ) often pass hydropower dams during adult spawning migrations. We conducted a 4-year acoustic telemetry study that characterized passage risks through two dams (West Enfield and Milford) in the Penobscot River, Maine, USA. We released tagged fish ( n = 355) at two sites, estimated survival and delay under variable river conditions, and compared performance among dammed and free-flowing river sections. Survival rates (standardized per river kilometre, rkm) were lower at West Enfield (Φ rkm = 0.984 ± 0.006 SE) and Milford (Φ rkm = 0.966 ± 0.007 SE) compared with undammed River sections (Φ rkm = 0.998 ± 0.0003 SE). Cumulative mortality was 8.7% (4.4 km) and 14.2% (5.5 km) through dammed sections and 8.7% throughout the rest of the river (58.1 km). Fish that already passed an upstream dam incurred higher downstream mortality compared with individuals without passage experience. Additionally, fish endured long delays at dams, and >10% of fish were delayed >24 h. Low flows exacerbated the risk of mortality and delay. These results offer evidence for direct, latent, and sublethal consequences of dam passage for migrating eels.

Maine↗
USGS2021

The interactive effects of stream temperature, stream size, and non-native species on Yellowstone cutthroat trout

Climate change and non-native species are considered two of the biggest threats to native salmonids in North America. We evaluated how non-native salmonids and stream temperature and discharge were associated with Yellowstone cutthroat trout ( Oncorhynchus clarkii bouvieri ) distribution, abundance, and body size to gain a more complete understanding of the existing threats to native populations. Allopatric Yellowstone cutthroat trout were distributed across a wide range of average August temperatures (3.2 to 17.7 °C), but occurrence significantly declined at colder temperatures (<10 °C) with increasing numbers of non-natives. At warmer temperatures, occurrence remained high, despite sympatry with non-natives. Yellowstone cutthroat trout relative abundance was significantly reduced with increasing abundance of non-natives, with the greatest impacts at colder temperatures. Body sizes of large Yellowstone cutthroat trout (90th percentile) significantly increased with warming temperatures and larger stream size, highlighting the importance of access to these more productive stream segments. Considering multiple population-level attributes demonstrates the complexities of how native salmonids (such as Yellowstone cutthroat trout) are likely to be affected by shifting climates.

Idaho, Wyoming↗
USGS2022

Cohort strength and body size in co-occurring salmonids in a small stream network: Variation in space and time

Trout and salmon commonly coexist in stream networks. Exploring similarities and differences among species can help explain coexistence and invasive ability. Here, we describe spatial distribution, cohort strengths and size-at-age of three co-occurring species in a small stream network. Spatial distributions varied dramatically among species; native brook trout occupied all stream reaches, naturalized brown trout were found in the mainstem and lower portions of tributaries and fry-stocked Atlantic salmon were limited to the mainstem. Size-at-age also differed among species, Atlantic salmon were consistently the smallest, brook trout were intermediate in size and brown trout were the largest. Despite size differences, mean lengths of brook trout and brown trout were highly correlated among years. Cohort strengths varied considerably across years but were also highly correlated for the two trout species, suggesting strong environmental control on cohort strength and a reduced role for species interactions. At low densities, we observed strong negative effects of density on body sizes and weaker effects otherwise. Overall, these results suggest differences in spatial distribution combined with similarities in response to environmental variation contribute to species coexistence in this small steam network.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2022

Incorporating antenna detections into abundance estimates of fish

Autonomous passive integrated transponder (PIT) tag antennas are commonly used to detect fish marked with PIT tags but cannot detect unmarked fish, creating challenges for abundance estimation. Here we describe an approach to estimate abundance from paired physical capture and antenna detection data in closed and open mark-recapture models. Additionally, for open models, we develop an approach that incorporates uncertainty in fish size, because fish size changes through time (as fish grow bigger) but is unknown if fish are not physically captured (e.g., only detected on antennas). Incorporation of size uncertainty allows for estimation of size-specific abundances and demonstrates a generally useful method for obtaining state-specific abundances estimates under state uncertainty. Simulation studies comparing models with and without antenna detections illustrate that the benefit of our approach increases as a larger proportion of the population is marked. When applied to two field data sets, our approach to incorporating antenna detections reduced uncertainty in abundance substantially. We conclude that PIT antennas hold great potential for improving abundance estimation, despite the challenges they present.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2022

High-resolution remote sensing and multistate occupancy estimation identify drivers of spawning site selection in fall chum salmon (Oncorhynchus keta) across a sub-Arctic riverscape

Groundwater upwellings provide warmer, stable overwinter temperatures for developing salmon embryos, which may be particularly important in cold, braided, gravel-bed sub-Arctic rivers. We used a three-year time series of aerial counts and remote sensing to estimate the distribution of low and high aggregations of spawning fall chum salmon ( Oncorhynchus keta ), classify approximately 0.5 km long river segments by geomorphic channel type, and map thermal variability along a 25.4 km stretch of the Teedriinjik River, Alaska. We used a dynamic multistate occupancy model to estimate detectability, occupancy, and the dynamics of spawning aggregations among river segments. Detectability was higher for large (>150) relative to smaller aggregations. Unoccupied segments were likely to remain so from year to year; low abundance spawning segments were dynamic and rarely remained in that state for multiple years, while ∼20%–35% of high abundance segments remained stable, indicating the presence of high-quality spawning habitat. Spawning habitat use was associated with warmer water temperatures likely caused by groundwater upwellings. We identified spawning habitat characteristics and trends in usage by fall chum salmon, which will inform land management decisions and assist in evaluating impacts of shifting climate conditions and resource management on Arctic salmon populations.

Alaska↗
USGS2022

From drought to deluge: Spatiotemporal variation in migration routing, survival, travel time and floodplain use of an endangered migratory fish

We developed a novel statistical model to relate the daily survival and migration dynamics of an endangered anadromous fish to river flow and water temperature during both extreme drought and severe flooding in an intensively managed river system. Our Bayesian temporally stratified multistate mark recapture model integrates over unobserved travel times and route transitions to efficiently estimate covariate relationships and includes an adjustment for telemetry tag battery failure. We applied the model to acoustic-tagged juvenile Sacramento river winter-run Chinook salmon (Oncorhynchus tshawytscha) and found that survival decreased with decreasing river flows and increased water temperatures. We found that fish were likely to enter at a large floodplain during flood conditions and that survival in floodplain was comparable to the mainstem Sacramento river. Our study demonstrates the response of an endangered anadromous fish population to extreme spatial and temporal variability in habitat accessibility and quality. The general model framework we introduce here can be applied to telemetry of migratory fish through systems with multiple routes to efficiently estimate spatiotemporal variation in survival, travel time, and routing.

California↗
USGS2021

Multi-decadal shifts in the distribution and timing of Pacific herring (Clupea pallasii) spawning in Prince William Sound, Alaska

The location and timing of spawning play a critical role in pelagic fish survival during early life stages and can affect subsequent recruitment. Spawning patterns of Pacific herring ( Clupea pallasii ) were examined in Prince William Sound (1973–2019) where the population has failed to recover since its collapse in 1993. Abrupt shifts in spawn distribution preceded the rapid increase in population size in the 1980s and later its collapse by one and two years, respectively. Following the population collapse, spawning contracted away from historical regions towards southeastern areas of the Sound, and the proportion of occupied spawning areas declined from 65% to <9%. Spatial differences in spawn timing variation were also apparent, as the median spawn date shifted earlier by 26 days in eastern and 15 days in western areas of Prince William Sound between 1980 and 2006, and then shifted later by 25 (eastern) and 19 (western) days over a 7-year period. Effects of contracted spawning areas and timing shifts on first-year survival and recruitment are uncertain and require future investigation.

Alaska↗
USGS2022

Physiological and nutritional constraints on zooplankton productivity due to eutrophication and climate change predicted using a resource-based modeling approach

Emerging evidence suggests that zooplankton production is affected by physiological and nutritional constraints due to climate change and eutrophication, which in turn could have broad implications for food-web dynamics and fisheries production. In this study, we developed a resource-based zooplankton production dynamics model that causally links freshwater cladoceran and copepod daily production-to-biomass (P/B) ratios with water temperature, phytoplankton biomass and community composition, and zooplankton feeding selectivity. This model was used to evaluate constraints on zooplankton growth under four hypothetical scenarios: involving natural plankton community seasonal succession; lake fertilization to enhance fisheries production; eutrophication; and climatic warming. Our novel modeling approach predicts zooplankton production is strongly dependent on seasonal variation in resource availability and quality, which results in more complex zooplankton dynamics than predicted by simpler temperature dependent models. For mesotrophic and hypereutrophic lakes, our study suggests that the ultimate control over zooplankton P/B ratios shifts from physiological control during colder periods to strong resource control during warmer periods. Our resource-based model provided important insights into the nature of biophysical control of zooplankton under a changing climate that has crucial implications for food web energy transfer and fisheries production.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2022

Estimating catch curve mortality based on relative return rates of coded wire tagged lake trout in US waters of Lake Huron

We estimated total mortality using catch curves based on relative return rates (RRs) of coded wire tagged lake trout ( Salvelinus namaycush ) in US waters of Lake Huron. RR was calculated as age-specific CPUE per million of fish stocked. Annual mortality for the late 1990s through early 2000s was estimated as 38% from the 1991–1995 year classes, with an effective age range of 5–10 years, and then was estimated as 24% for the post-2000 period from the 1996–2009 year classes. The two estimates from simple catch curve regressions based on average RR at age values were the same as from a mixed model with individual RR values from all stocking events. These two estimates were also comparable to the findings from statistical catch-at-age assessments with fundamentally different assumptions. Our approach is not constrained by the assumption that the expected recruitment is a constant over time and thus has the advantage to use multiple observations on each age from multiple cohorts. Our approach has broad applicability to aquatic ecosystems in which multiple mark-and-release events of fish stocking have been implemented.

Michigan↗
USGS2022

A novel approach for directly incorporating disease into fish stock assessment: A case study with seroprevalence data

When estimating mortality from disease with fish population models, common disease surveillance data such as infection prevalence are not always informative, especially for fast-acting diseases that may go unobserved in infrequently sampled populations. In these cases, seroprevalence — the proportion of fish with measurable antibody levels in their blood — may be more informative. In cases of life-long immunity, seroprevalence data require less frequent sampling intervals than infection prevalence data and can reflect the cumulative exposure history of fish. We simulation tested the usefulness of seroprevalence data in an age-structured fish stock assessment model using viral hemorrhagic septicemia virus (VHSV) in Pacific herring ( Clupea pallasii ) as a case study. We developed a novel epidemiological model to simulate population dynamics and seroprevalence data and fitted to these data in an integrated catch-at-age model with equations that estimate age- and time-varying mortality from disease. We found that simulated seroprevalence data can provide accurate estimates of infection history and disease-associated mortality. Importantly, even models that misspecified nonstationary processes in background or disease-associated mortality, but included seroprevalence data, accurately estimated annual infection and population abundance.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2022

Balancing prey availability and predator consumption: A multispecies stock assessment for Lake Ontario

Trophic interactions are drivers of ecosystem change and stability, yet are often excluded from fishery assessment models, despite their potential capacity to improve estimates of species dynamics and future fishery sustainability. In Lake Ontario, recreational salmonine fisheries, including Chinook salmon ( Oncorhynchus tshawytscha ) and lake trout ( Salvelinus namaycush ), depend on a single prey species, alewife ( Alosa pseudoharengus ). To accommodate strong trophic interactions among species, we developed a multispecies statistical catch-at-age assessment (MSCAA) model that links the dynamics of the salmonine fisheries and alewife via prey consumption and predator growth. We found that prey availability had declined since 2015 due to decreased alewife recruitment and increased Chinook salmon biomass, leading to higher alewife mortality rates and lower predator growth rates. Forward projections of predator–prey dynamics suggest that Chinook salmon stocking reductions may improve the probability for alewife population growth, but could be counteracted by increased natural Chinook salmon recruitment. Combined with predator- and prey-monitoring efforts, multispecies assessments show promise as models of intermediate complexity to support a transition to ecosystem-based approaches to fisheries management.

Lake Ontario↗
USGS2022

Combining fixed-location count data and movement data to estimate abundance of a lake sturgeon spawning run

Estimating abundance of migrating fishes is challenging. While sonars can be deployed continuously, improper assumptions about unidirectional migration and complete spatial coverage can lead to inaccurate estimates. To address these challenges, we present a framework for combining fixed-location count data from a dual-frequency identification sonar (DIDSON) with movement data from acoustic telemetry to estimate spawning run abundance of lake sturgeon ( Acipenser fulvescens ). Acoustic telemetry data were used to estimate the probability of observing a lake sturgeon on the DIDSON and to determine the probability that a lake sturgeon passing the DIDSON site had passed the site previously during the season. Combining probabilities with DIDSON counts, using a Bayesian integrated model, we estimated the following abundances: 99 (42–215 credible interval, CI) in 2017, 131 (82–248 CI) in 2018, and 92 (47–184 CI) in 2019. Adding movement data generated better inferences on count data by incorporating fish behavior (e.g., multiple migrations in a single season) and its uncertainty into abundance estimates. This framework can be applied to count and movement data to estimate abundance of spawning runs of other migratory fishes in riverine systems.

Vermont↗
USGS2022

Quantifying status and trends from monitoring surveys: Application to Pygmy Whitefish (Prosopium coulterii) in Lake Superior

Population assessments of fish species often rely on data from surveys with different objectives, such as measuring biodiversity or community dynamics. These surveys often contain spatial–temporal dependencies that can greatly influence conclusions drawn from analyses. Pygmy whitefish (PWF, Prosopium coulterii ) populations in Lake Superior were recently assessed as Threatened by the Committee on the Status of Endangered Species in Canada, which motivated a thorough analysis of available data to improve our understanding of its population status. The US Geological Survey conducts annual bottom trawl surveys in Lake Superior that commonly capture PWF. We used these data (1989–2018) to model temporal trends in PWF biomass density and make lake-wide population projections. We used a Bayesian approach, integrated nested Laplace approximation (INLA), and compared the impact of including different random structures on model fit. Inclusion of spatial structure improved model fit and conclusions differed from models omitting random effects. PWF populations have experienced periodic fluctuations in biomass density since 1989, though 2018 may represent the lowest density in the 30-year time series. Lake-wide biomass was estimated to be 71.5 t.

Lake Superior↗
USGS2022

Joint-species analysis reveals potential displacement of native fishes by non-native fishes within the Santa Ana River, California

Accurate estimates of abundance are a cornerstone for resource managers to make effective decisions for fish conservation. However, multiple sampling methods often are required to sample fish communities, and ignoring the detection process can create substantial bias in latent state parameter estimation (e.g., abundance, survival). We developed a joint-species N -mixture model that integrated snorkel, seining, and electrofishing surveys to estimate factors affecting native and non-native fish distributions in the Santa Ana River, California. We found through data integration that native Santa Ana sucker ( Catostomus santaanae ) and arroyo chub ( Gila orcuttii ) were most abundant in wide stream channels, and the abundance of both native fishes were negatively correlated with non-native largemouth bass ( Micropterus salmoides ). Our results highlight the power of integrating multiple data sets into a single analysis and incorporating among-species correlation into abundance modeling. Our results also highlight a pattern of native fish declines that coincides with an expanding largemouth bass population, a concern for the management of native aquatic communities within the Santa Ana River.

California↗
USGS2022

Conflicts among protected native birds and valuable sport fishes: Potential pelican predation effects

Reservoirs are examples of novel ecosystems that have developed into popular sport fisheries; these systems are also becoming seasonal refuges for migratory birds, including the piscivorous American white pelican ( Pelecanus erythrorhynchos ). We (1) investigated the proportion of cutthroat trout ( Oncorhynchus clarkii utah ) and other species consumed by pelicans, (2) compared whether pelicans have an adverse effect on cutthroat trout spawning movement, and (3) determined the importance of pelican predation relative to other sources of fish mortality in Strawberry Reservoir, Utah, USA. Pelican diet samples consisted of >85% Utah sucker ( Catostomus ardens ), 6% Utah chub ( Gila atraria ), and 3% cutthroat trout. Based on bioenergetics, we estimated that pelicans consumed 384–3020 individual cutthroat trout (0.17%–1.3% of population), in contrast to 14 166–27 196 nongame sucker and chub. Bird-related mortality rate ranged from 1% to 6% for stocked, PIT (passive integrated transponder)-tagged adult cutthroat trout and from 4% to 16% for subadult cutthroat trout. Based on these results, any management action taken to control pelican predation would need to be weighed against the benefits of nongame fish removal and the protected status of pelicans.

Utah↗
USGS2022

Response of alewife abundance to the bacterial kidney disease outbreak in the Chinook salmon population of Lake Michigan: Importance of predation

Prey fish abundance can be influenced by predation (top-down) and food limitation (bottom-up) effects. I characterized temporal trends in yearling and older (YAO) alewife ( Alosa pseudoharengus ) biomass density, as estimated by a long-term bottom trawl survey, in Lake Michigan during 1973–2019. Special attention was given to the bacterial kidney disease (BKD) outbreak in the population of Chinook salmon ( Oncorhynchus tshawytscha ), the predominant predator on alewives in the lake. YAO alewife biomass density exhibited a steep and significant decline during 1973–1985, but then partially rebounded with a significant increase between the 1983–1985 and 1986–2003 (BKD years) periods, followed by a significant decrease between the 1986–2003 and 2004–2006 periods. YAO alewife biomass density showed another significant decline during 2004–2019. The BKD outbreak led to a partial relaxation of predation on the YAO alewife population, and YAO alewife biomass density responded by showing a moderate increase in 1986 and then fluctuating about this moderately higher level for more than 15 years. Overall, temporal trends in YAO alewife biomass density were primarily driven by predation.

Lake Michigan↗
USGS2022

Stream size, temperature, and density explain body sizes of freshwater salmonids across a range of climate conditions

Climate change and anthropogenic activities are altering the body sizes of fishes, yet our understanding of factors influencing body size for many taxa remains incomplete. We evaluated the relationships between climate, environmental, and landscape attributes and the body size of different taxa of freshwater trout (Salmonidae) in the USA. Hierarchical spatial modeling across a gradient of habitats (5221 sites) illustrated the importance of watershed effects, which explained 17%–45% of the of the variation in body size across taxa. Stream size had a strong, positive relationship with body size, yet there was approximately tenfold difference in the strength of the relationship across taxa. Trout body size consistently declined with increasing density across taxa. Despite reliance on cold water, we found positive relationships between summer stream temperature and trout body size across most taxa. Our results highlight how providing trout access to larger, productive rivers for the expression of growth and life-history variation would promote body size diversity within and across populations.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2022

First juvenile Chum Salmon confirms successful reproduction for Pacific salmon in the North American Arctic

The distributional extent of Pacific salmon Oncorhynchus spp. in the North American Arctic is unresolved. While adult Pacific salmon have a recurring presence across the Alaskan North Slope and into the Canadian Arctic, it is uncertain if these fish are part of established Arctic populations, vagrants from outside sources reproducing unsuccessfully, or both. Here we present the first confirmed record of a juvenile Chum Salmon O. keta captured in the nearshore marine ecosystem in the North American Arctic. This provides the first scientific evidence of successful spawning and early marine survival of Pacific salmon in the North American Arctic. It was caught near Kaktovik, Alaska in August 2017 with a group of similarly sized age-0 Mackenzie River Arctic Cisco Coregonus autumnalis . Stable isotope and otolith microchemistry analyses are consistent with use of the nearshore estuarine corridor from the Mackenzie River west along the northern coast. This contributes critical information needed to identify, manage, and conserve biodiversity at the northern range edge, and will help to clarify the status of Pacific salmon as potentially emerging fisheries develop in the North American Arctic due to climate warming.

Alaska↗