USGS ScienceSearch

SEARCH · USGS Science

Results for “Stages”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 235 records · Page 13Linked to original sources

Bar-tailed Godwits Limosa lapponica in Alaska: A population estimate from the staging grounds

Bar-tailed Godwits Limosa lapponica were surveyed on their staging grounds in Alaska during September 1995 and 1997. The single high count of 94,000 birds closely matched that of counts from New Zealand and south-eastern Australia, the known non-breeding area for most of the baueri subspecies. Numbers recorded on the southern Yukon-Kuskokwim River Delta and at Egegik Bay, a small estuary along the Alaska Peninsula, qualify both areas as Hemispheric Reserves under the Westem Hemisphere Shorebird Reserve Network, as sites within the East Asian-Australian Shorebird Reserve Network, and as Ramsar sites. The breeding origins, destinations, and taxonomic affinities of Bar-tailed Godwits staging on the coast of south-west Alaska need further assessment.

Alaska

Autumn staging of cackling Canada geese on the Alaska Peninsula

Cackling Canada Geese Branta canadensis minima undergo a long (2,800 km) migration between their autumn staging areas on the Alaska Peninsula and wintering areas in Oregon and California. Adults and young lost an average of 543 g during this migratory flight. Weight gains between fledging and autumn migration are essential for the successful completion of the flight. Autumn staging is important for the acquisition or maintenance of energy stores, particularly for young of the year, as evidenced by the intense feeding of this age class at Ugashik Bay. Factors associated with the arrival and departure of Cackling Geese at Ugashik Bay are presently unknown.

Alaska

Diatom biostratigraphy and paleoecology of the type section of the Luisian Stage, central California

Diatoms from the type section of the Luisian Stage in central California correlate with the lowermost part of the Denticulopsis lauta Zone through the lower part of subzone "a" of the Denticulopsis hustedtii-D. lauta Zone and are early Middle Miocene in age (about 6.0 to 14.0 Ma), Rocks assigned to the Luisian Stage by benthic foraminifers elsewhere in California exhibit little diachroneity in terms of diatom biostratigraphy, however, detailed studies of boundaries have not been done. Planktic diatoms dominate the assemblages, although an increase in benthic and tychopelagic diatoms in the overlying Hames Member of the Monterey Formation probably reflects shoaling. A cooling trend is suggested by diatom assemblages in the upper part of the section and is most marked near the top of the type Luisian. This cooling trend is supported by data elsewhere in the Pacific Basin as well as by both megafossil and microfossil studies in California. One hundred four diatom taxa are documented, and one new species, Coscinodiscus volutus Baldauf, is described.

California

Sensitivity of lake sturgeon ( Acipenser fulvescens ) early life stages to 2,3,7,8-tetrachlorodibenzo- P -dioxin and 3,3′,4,4′,5-pentachlorobiphenyl

The aquatic food web of the Great Lakes has been contaminated with polychlorinated biphenyls (PCBs) since the mid-20th century. Threats of PCB exposures to long-lived species of fish, such as lake sturgeon ( Acipenser fulvescens ), have been uncertain because of a lack of information on the relative sensitivity of the species. The objective of the present study was to evaluate the sensitivity of early–life stage lake sturgeon to 3,3′,4,4′,5-pentachlorobiphenyl (PCB-126) or 2,3,7,8-tetrachlorodibenzo- p -dioxin (TCDD) exposure. Mortality, growth, morphological and tissue pathologies, swimming performance, and activity levels were used as assessment endpoints. Pericardial and yolk sac edema, tubular heart, yolk sac hemorrhaging, and small size were the most commonly observed pathologies in both TCDD and PCB-126 exposures, beginning as early as 4 d postfertilization, with many of these pathologies occurring in a dose-dependent manner. Median lethal doses for PCB-126 and TCDD in lake sturgeon were 5.4 ng/g egg (95% confidence interval, 3.9–7.4 ng/g egg) and 0.61 ng/g egg (0.47–0.82 ng/g egg), respectively. The resulting relative potency factor for PCB-126 (0.11) was greater than the World Health Organization estimate for fish (toxic equivalency factor = 0.005), suggesting that current risk assessments may underestimate PCB toxicity toward lake sturgeon. Swimming activity and endurance were reduced in lake sturgeon survivors from the median lethal doses at 60 d postfertilization. Threshold and median toxicity values indicate that lake sturgeon, like other Acipenser species, are more sensitive to PCB and TCDD than the other genus of sturgeon, Scaphirhynchus , found in North America. Indeed, lake sturgeon populations in the Great Lakes and elsewhere are susceptible to PCB/TCDD-induced developmental toxicity in embryos and reductions in swimming performance.

Environmental Toxicology and Chemistry

Acute toxicity of polyacrylamide flocculants to early life stages of freshwater mussels

Polyacrylamide has become an effective tool for reducing construction-related suspended sediment and turbidity, which are considered to have significant adverse impacts on aquatic ecosystems and are a leading cause of the degradation of North American streams and rivers. However, little is known about the effects of polyacrylamide on many freshwater organisms, and prior to the present study, no information existed on the toxicity of polyacrylamide compounds to native freshwater mussels (family Unionidae), one of the most imperiled faunal groups globally. Following standard test guidelines, we exposed juvenile mussels (test duration 96 h) and glochidia larvae (test duration 24 h) to 5 different anionic polyacrylamide compounds and 1 non-ionic compound. Species tested included the yellow lampmussel ( Lampsilis cariosa ), an Atlantic Slope species that is listed as endangered in North Carolina; the Appalachian elktoe ( Alasmidonta raveneliana ), a federally endangered Interior Basin species; and the washboard ( Megalonaias nervosa ), a common Interior Basin species. We found that median lethal concentrations (LC50s) of polyacrylamide ranged from 411.7 to >1000 mg/L for glochidia and from 126.8 to >1000 mg/L for juveniles. All LC50s were orders of magnitude greater (2–3) than concentrations typically recommended for turbidity control (1–5 mg/L), regardless of their molecular weight or charge density. The results demonstrate that the polyacrylamide compounds tested were not acutely toxic to the mussel species and life stages tested, indicating minimal risk of short-term exposure from polyacrylamide applications in the environment. However, other potential uses of polyacrylamide in the environment (e.g., wastewater treatment, paper processing, mining, algae removal) and their chronic or sublethal effects remain uncertain and warrant additional investigation.

Environmental Toxicology and Chemistry

Sex- and developmental stage-related differences in the hepatic transcriptome of Japanese quail (Coturnix japonica) exposed to 17β-Trenbolone

Endocrine-disrupting chemicals can cause transcriptomic changes that may disrupt biological processes associated with reproductive function including metabolism, transport, and cell growth. We investigated effects from in ovo and dietary exposure to 17β-trenbolone (at 0, 1, and 10 ppm) on the Japanese quail ( Coturnix japonica ) hepatic transcriptome. Our objectives were to identify differentially expressed hepatic genes, assess perturbations of biological pathways, and examine sex- and developmental stage–related differences. The number of significantly differentially expressed genes was higher in embryos than in adults. Male embryos exhibited greater differential gene expression than female embryos, whereas in adults, males and females exhibited similar numbers of differentially expressed genes (>2-fold). Vitellogenin and apovitellenin-1 were up-regulated in male adults exposed to 10 ppm 17β-trenbolone, and these birds also exhibited indications of immunomodulation. Functional grouping of differentially expressed genes identified processes including metabolism and transport of biomolecules, enzyme activity, and extracellular matrix interactions. Pathway enrichment analyses identified as perturbed peroxisome proliferator–activated receptor pathway, cardiac muscle contraction, gluconeogenesis, growth factor signaling, focal adhesion, and bile acid biosynthesis. One of the primary uses of 17β-trenbolone is that of a growth promoter, and these results identify effects on mechanistic pathways related to steroidogenesis, cell proliferation, differentiation, growth, and metabolism of lipids and proteins.

Environmental Toxicology and Chemistry

Sensitivity of early-life stage golden trout to low pH and elevated aluminum

Early-life-stage golden trout ( Oncorhynchus aguabonita aguabonita ) were exposed to acid and Al to examine the response and determine the sensitivity of a western, alpine salmonid to conditions simulating an episodic pH depression. Freshly fertilized eggs, alevins, and swim-up larvae were exposed for 7 d to one of 12 combinations of pH and Al, and surviving fish were held to 40 d post-hatch to determine the effect of exposure on subsequent survival and recovery. Golden trout are sensitive to conditions simulating episodic acidification events typically observed in the field. Significant mortality occurred when the pH of test waters was below 5.0 in the absence of Al or when pH was 5.5 in the presence of 100 μg/L total Al. Behavioral impairments were sensitive indicators of low pH and Al stress. Impaired locomotory and feeding behavior occurred at pH 5.5 without Al and at Al concentrations > 50 μg/L. In contrast, growth, RNA-to-DNA ratio, and whole-body ion concentration were relatively less sensitive indicators of sublethal acid and Al stress.

Environmental Toxicology and Chemistry

Photoenhanced toxicity of a carbamate insecticide to early life stage anuran amphibians

Aican clawed frog ( Xenopus laevis ) and gray tree frog ( Hyla versicolor ) embryos and tadpoles were exposed to sublethal levels of carbaryl, a broad-spectrum insecticide, and ultraviolet radiation to determine interactive and sublethal effects. Ultraviolet intensity (UV-B [285–320 nm] plus UV-A [321–400 nm]) was controlled with various types of plastic filters and quantified with a scanning spectroradiometer. Significant differences in swimming activity and mortality of both species were evident during the 96-h experiments. Ultraviolet-B radiation alone and carbaryl in the presence of UV-B significantly decreased swimming activity of both species. As little as 1.5% intensity of ambient solar UV-B radiation photoactivated carbaryl. Toxicity of 7.5 mg/L carbaryl increased by 10-fold in the presence of UV-B in all species and life stages tested. Our results indicate that photoenhancement by solar UV-B radiation should be considered when evaluating the toxicity of contaminants to amphibians and other organisms.

Environmental Toxicology and Chemistry

Morphometric discrimination of early life stage Lampetra tridentata and L richardsoni (Petromyzonidae) from the Columbia river basin

The effectiveness of morphometric and meristic characteristics for taxonomic discrimination of Lampetra tridentata and L. richardsoni (Petromyzonidae) during embryological, prolarval, and early larval stages (i.e., age class 1) were examined. Mean chorion diameter increased with time from fertilization to hatch and was significantly greater for L. tridentata than for L. richardsoni at 1, 8, and 15 days postfertilization. Lampetra tridentata larvae had significantly more trunk myomeres than L. richardsoni; however, trunk myomere numbers were highly variable within species and deviated from previously published data. Multivariate examinations of prolarval and larval L. tridentata (7.2-11.0 mm; standard length) and L. richardsoni (6.6-10.8 mm) were conducted based on standard length and truss element lengths established from eight homologous landmarks. Principal components analysis indicated allometric relationships among the morphometric characteristics examined. Changes in body shape were indicated by groupings of morphometric characteristics associated with body regions (e.g., oral hood, branchial region, trunk region, and tail region). Discriminant function analysis using morphometric characteristics was successful in classifying a large proportion (>94.7%) of the lampreys sampled.

Journal of Morphology

Spring snow goose hunting influences body composition of waterfowl staging in Nebraska

A spring hunt was instituted in North America to reduce abundance of snow geese ( Chen caerulescens ) by increasing mortality of adults directly, yet disturbance from hunting activities can indirectly influence body condition and ultimately, reproductive success. We estimated effects of hunting disturbance by comparing body composition of snow geese and non-target species, greater white-fronted geese ( Anser albifrons ) and northern pintails ( Anas acuta ) collected in portions of south-central Nebraska that were open (eastern Rainwater Basin, ERB) and closed (western Rainwater Basin, WRB; and central Platte River Valley, CPRV) to snow goose hunting during springs 1998 and 1999. Lipid content of 170 snow geese was 25% (57 g) less in areas open to hunting compared to areas closed during hunting season but similar in all areas after hunting was concluded in the ERB. Protein content of snow geese was 3% (14 g) less in the region open to hunting. Greater white-fronted geese had 24% (76 g; n = 129) less lipids in the hunted portion of the study area during hunting season, and this difference persisted after conclusion of hunting season. We found little difference in lipid or protein content of northern pintails in relation to spring hunting. Indirect effects of spring hunting may be considered a collateral benefit regarding efforts to reduce overabundant snow goose populations. Disrupted nutrient storage observed in greater white-fronted geese represents an unintended consequence of spring hunting that has potential to adversely affect reproduction for this and other species of waterbirds staging in the region.

Nebraska

Response of Sandhill Crane (Grus canadensis) riverine roosting habitat to changes in stage and sandbar morphology

Over the past century, flow regulation and vegetation encroachment have reduced active channel widths along the central Platte River, Nebraska. During the last two decades, an annual program of in-channel vegetation management has been implemented to stabilize or expand active channel widths. Vegetation management practices are intended to enhance riverine habitats which include nocturnal roosting habitat for sandhill cranes. Evaluating the success of other management treatments such as streamflow modification requires an understanding of how flow shapes the sandbars in the river and how sandbar morphology interacts with flow to create crane habitat. These linkages were investigated along a 1-km managed river reach by comparing the spatial pattern of riverine roosts and emergent sandbars identified with aerial infrared imagery to variables computed with a two-dimensional hydraulic model. Nocturnal observations made multiple years showed that the area and patterns of riverine roosts and emergent sandbars and the densities of cranes within roosts changed with stage. Despite sandbar vegetation management, low flows were concentrated into incised channels rather than spread out over broad sandbars. The flow model was used to compute hydraulic variables for identical streamflows through two sandbar morphologies; one following a period of relatively high flow and the other following the low-flow period. Compared with the simulation using the morphology from the antecedent high flow, the simulation using the morphology from the antecedent low flow produced a smaller quantity of available wetted area. These remote-sensing observations and hydraulic simulations illustrate the importance of considering flow history when designing streamflows to manage in-channel habitat for cranes.

Nebraska

Optimizing surveys of fall-staging geese using aerial imagery and automated counting

Ocular aerial surveys allow efficient coverage of large areas and can be used to monitor abundance and distribution of wild populations. However, uncertainty around resulting population estimates can be large due to difficulty in visually identifying and counting animals from aircraft, as well as logistical challenges in estimating detection probabilities. Photographic aerial surveys can mitigate these challenges and can allow flight at higher altitudes to minimize disturbance of birds and improve safety for surveyors. We evaluated a photographic aerial survey that incorporated a systematic sampling design with automated photo capture and processing for fall-staging geese at Izembek Lagoon, Alaska, in 2017–2019. Ocular aerial surveys have been completed at Izembek Lagoon for >40 years. For the new photo survey, we used a commercial system to automatically trigger cameras at preset points. We then applied a machine-learning algorithm trained to automatically identify and count geese in our photos, manually corrected those counts, and quantified the algorithm's accuracy. We translated corrected counts into density and extrapolated mean density across the entire lagoon to estimate total population size for Pacific brant ( Branta bernicla ) and cackling geese ( B. hutchinsii ). The automated algorithm undercounted geese, but successfully identified the small subset of photos containing geese. Manual correction was therefore needed only for photos automatically identified as containing geese, allowing substantial reduction of workload. Manually-corrected, photo-based estimates of Pacific brant and cackling goose population sizes were larger and more precise than ocular estimates in all 3 years. To reduce costs with little penalty for variance around population estimates, the photographic survey design could be optimized by reducing the number of transects to ~67% of the current number while still manually correcting all photos in which the automated algorithm detected geese. Further years of both ocular and photo surveys would be needed to calibrate the photo estimates against the >40-year timeseries of the ocular survey, after which the photo series could successfully guide management of Pacific brant. As technologies continue to advance, we expect photographic surveys with automated counting to be easily implemented and advantageous to many monitoring programs.

Alaska

Evidence for millennial-scale climate change during marine isotope stages 2 and 3 at Little Lake, Western Oregon, U.S.A.

Pollen and geochemical data from Little Lake, western Oregon, suggest several patterns of millennial-scale environmental change during marine isotope stage (MIS) 2 (14,100-27,600 cal yr B.P.) and the latter part of MIS 3 (27,600-42,500 cal yr B.P.). During MIS 3, a series of transitions between warm- and cold-adapted taxa indicate that temperatures oscillated by ca. 2??-4??C every 1000-3000 yr. Highs and lows in summer insolation during MIS 3 are generally associated with the warmest and coldest intervals. Warm periods at Little Lake correlate with warm sea-surface temperatures in the Santa Barbara Basin. Changes in the strength of the subtropical high and the jet stream may account for synchronous changes at the two sites. During MIS 2, shifts between mesic and xeric subalpine forests suggest changes in precipitation every 1000-3000 yr. Increases in Tsuga heterophylla pollen at 25,000 and 22,000 cal yr B.P. imply brief warmings. Minimum summer insolation and maximum global ice-volumes during MIS 2 correspond to cold and dry conditions. Fluctuations in precipitation at Little Lake do not correlate with changes in the Santa Barbara Basin and may be explained by variations in the strength of the glacial anticyclone and the position of the jet stream. ?? 2001 University of Washington.

Quaternary Research

The effects of petroleum on different stages of incubation in bird eggs

Artificially incubated mallard eggs were treated externally with 5 μl of No. 2 fuel oil or 5 μl of Southern Louisiana crude oil at various times during the incubation period. Embryos were most sensitive to petroleum during the first 10 days of incubation. Southern Louisiana crude oil was more toxic to mallard embryos than No. 2 fuel oil. Hatching weights of ducklings from treated eggs were usually not different from hatching weights of control ducklings. Petroleum may cause bill abnormalities among embryos exposed to a lethal amount of oil early in incubation, but few external malformations of any kind were observed among survivors of the oil exposure. The breeding effort of colonial aquatic birds would be in the greatest danger from oil contamination when a large portion of the birds are in the early stages of incubation.

Bulletin of Environmental Contamination and Toxico

Complex staged emplacement of a basaltic lava: The example of the July 1974 flow of Kīlauea

Basaltic lava flows can be highly destructive. Forecasting the future path and/or behavior of an active lava flow is challenging because topography is often poorly constrained and lava has a complex rheology and emplacement history. Preserved lavas are an important source of information which, combined with observations of active flows, underpins conceptual models of lava flow emplacement. However, the value of preserved lavas is limited because pre-eruptive topography and, thus, syn-eruptive lava flow geometry are usually not known. Here, we use tree-mold data to constrain pre-eruptive topography and syn-eruptive lava flow geometry of the July 1974 flow of Kīlauea (USA). Tree molds, which are formed after advancing lava encloses standing trees, preserve the lava inundation height and the final preserved thickness of lava. We used data from 282 tree molds to reconstruct the temporal and spatial evolution of the ~ 2.1 km-long July 1974 flow. The tree mold dataset yields a detailed dynamic picture of staged emplacement, separated by intervals of ponding. In some ponded areas, flow depth during emplacement (~ 5 m) was twice the preserved thickness of the final lava (2–3 m). Drainage of the ponds led to episodic surges in flow advancement, decoupled from fluctuations in vent discharge rate. We infer that the final breakout occurred after the cessation of fountaining. Such complex emplacement histories may be common for pāhoehoe lavas at Kīlauea and elsewhere in situations where the terrain is of variable slope, and/or where lava is temporarily perched and stored.

Hawaii

Late-stage sulfides and sulfarsenides in Lower Cambrian black shale (stone coal) from the Huangjiawan mine, Guizhou Province, People's Republic of China

The Ni-Mo Huangjiawan mine, Guizhou Province, People's Republic of China, occurs in Lower Cambrian black shale (stone coal) in an area where other mines have recently extracted ore from the same horizon. Detailed electron microprobe (EMPA) and scanning electron microscope (SEM) analyses of representative thin sections have revealed a complex assemblage of sulfides and sulfarsenides. Early sulfidic and phosphatic nodules and host matrix have been lithified, somewhat fractured, and then mineralized with later-stage sulfides and sulfarsenides. Gersdorffite, millerite, polydymite, pyrite, sphalerite, chalcopyrite, galena, and clausthalite have been recognized. EMPA data are given for the major phases. Pyrite trace-element distributions and coeval Ni-, As-sulfides indicate that in the main ore layer, the last sulfide deposition was Ni-As-Co-rich. Mo and V deposition were early in the petrogenesis of these rocks. The assemblages gersdorffite-millerite-polydymite (pyrite) and millerite-gersdorffite (pyrite) and the composition of gersdorffite indicate a formation temperature of between 200?? and 300??C suggesting that the last solutions to infiltrate and mineralize the samples were related to hydrothermal processes. Environmentally sensitive elements such as As, Cd, and Se are hosted by sulfides and sulfarsenides and are the main source of these elements to residual soil. Crops grown on them are enriched in these elements, and they may be hazardous for animal and human consumption. ?? Springer-Verlag 2007.

Mineralogy and Petrology

Habitat selection and movements of Piping Plover broods suggest a tradeoff between breeding stages

In precocial birds, adults select breeding areas using cues associated with habitat characteristics that are favorable for nesting success and chick survival, but there may be tradeoffs in habitat selection between these breeding stages. Here we describe habitat selection and intra-territory movements of 53 Piping Plover ( Charadrius melodus ) broods (320 observations) during the 2007–2008 breeding seasons on mainland- and island-shoreline habitats at Lake Sakakawea, North Dakota, USA. We used remotely sensed habitat characteristics to separately examine habitat selection and movements at two spatiotemporal scales to account for potential confounding effects of nest-site selection on brood-rearing habitat used. The scales used were (1) the entire brood-rearing period within available brood-rearing areas and (2) 2-day observation intervals within age-specific discrete habitat selection choice sets. Analyses at both scales indicated that broods selected areas which were non-vegetated, moderately level, and nearer to the shoreline. Rate of brood movement increased with age up to 5 days, then stabilized; broods that hatched >50 m away from the shoreline moved toward the shoreline. Brood movements were greater when they were in vegetated areas, when the brood-rearing area was of greater topographic complexity, and when broods aged 6–25 days were further away from the shoreline. Using inferences from our results and those of previously published work, we postulate how a potential tradeoff in habitat selection between nesting and brood-rearing can contribute to an ecological trap in a novel habitat. This work, in the context of published works, suggests that plover breeding habitat is a complex of both nesting and brood-rearing habitats and provides a basis for making remotely sensed abundance estimates of suitable breeding habitat for Piping Plovers.

North Dakota

Growth of mallards fed phosphamidon for 13-day periods during three different developmental stages

Mallard ducklings ( Anas platyrhynchos ) were exposed to a 13-day dietary treatment of 0, 0·5 or 5·0 ppm phosphamidon at one of three successive age intervals (5–17 days, 18–30 days, or 31–43 days) during a 10-week growth period. Weekly measurements of body weight, wing length, primary feather length, and bill length revealed slower development of primary feathers in those birds treated from 5 to 17 days; treatment effects on body weight and wing length from 6 to 8 weeks of age were observed among those birds treated from 18 to 30 days of age. Some differences in growth patterns among birds treated with the same phosphamidon level, but at different growth stages, were attributed to the varying size of the group with which a duckling was housed at different times in the growth process. No brain cholinesterase depression was observed in any group either 24h after phosphamidon treatment was terminated or at 10 weeks of age.

Environmental Pollution (Series A)