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At least 235 records · Page 13Linked to original sources

Managing a subsidized predator population: Reducing common raven predation on desert tortoises

Human communities often are an inadvertent source of food, water, and other resources to native species of wildlife. Because these resources are more stable and predictable than those in a natural environment, animals that subsist on them are able to increase in numbers and expand their range, much to the detriment of their competitors and species they prey upon. In the Mojave Desert, common ravens (Corvus corax) have benefited from human-provided resources to increase in population size precipitously in recent years. This trend has caused concern because ravens prey on juvenile desert tortoises (Gopherus agassizii), a federally threatened species. In this paper, I discuss management strategies to reduce raven predation on desert tortoises. The recommendations fall into three categories: (1) managing raven populations by reducing access to anthropogenic resources; (2) removing offending ravens or other birds in specially targeted tortoise management zones; and (3) continuing research on raven ecology, raven behavior, and methods of reducing raven predation on tortoises. I also recommend approaching the problem within an adaptive management framework: management efforts should first be employed as scientific experiments - with replicates and controls - to yield an unbiased assessment of their effectiveness. Furthermore, these strategies should be implemented in concert with actions that reduce other causes of desert tortoise mortality to aid the long-term recovery of their populations. Overall, the approaches outlined in this paper are widely applicable to the management of subsidized predators, particularly where they present a threat to a declining species of prey.

Environmental Management

Beowulf Distributed Processing and the United States Geological Survey

Introduction In recent years, the United States Geological Survey's (USGS) National Mapping Discipline (NMD) has expanded its scientific and research activities. Work is being conducted in areas such as emergency response research, scientific visualization, urban prediction, and other simulation activities. Custom-produced digital data have become essential for these types of activities. High-resolution, remotely sensed datasets are also seeing increased use. Unfortunately, the NMD is also finding that it lacks the resources required to perform some of these activities. Many of these projects require large amounts of computer processing resources. Complex urban-prediction simulations, for example, involve large amounts of processor-intensive calculations on large amounts of input data. This project was undertaken to learn and understand the concepts of distributed processing. Experience was needed in developing these types of applications. The idea was that this type of technology could significantly aid the needs of the NMD scientific and research programs. Porting a numerically intensive application currently being used by an NMD science program to run in a distributed fashion would demonstrate the usefulness of this technology. There are several benefits that this type of technology can bring to the USGS's research programs. Projects can be performed that were previously impossible due to a lack of computing resources. Other projects can be performed on a larger scale than previously possible. For example, distributed processing can enable urban dynamics research to perform simulations on larger areas without making huge sacrifices in resolution. The processing can also be done in a more reasonable amount of time than with traditional single-threaded methods (a scaled version of Chester County, Pennsylvania, took about fifty days to finish its first calibration phase with a single-threaded program). This paper has several goals regarding distributed processing technology. It will describe the benefits of the technology. Real data about a distributed application will be presented as an example of the benefits that this technology can bring to USGS scientific programs. Finally, some of the issues with distributed processing that relate to USGS work will be discussed.

Open-File Report

Design, development, and implementation of IsoBank: A centralized repository for isotopic data

Stable isotope data have made pivotal contributions to nearly every discipline of the physical and natural sciences. As the generation and application of stable isotope data continues to grow exponentially, so does the need for a unifying data repository to improve accessibility and promote collaborative engagement. This paper provides an overview of the design, development, and implementation of IsoBank , a community-driven initiative to create an open-access repository for stable isotope data implemented online in 2021. A central goal of IsoBank is to provide a web-accessible database supporting interdisciplinary stable isotope research and educational opportunities. To achieve this goal, we convened a multi-disciplinary group of over 40 analytical experts, stable isotope researchers, database managers, and web developers to collaboratively design the database. This paper outlines the main features of IsoBank and provides a focused description of the core metadata structure. We present plans for future database and tool development and engagement across the scientific community. These efforts will help facilitate interdisciplinary collaboration among the many users of stable isotopic data while also offering useful data resources and standardization of metadata reporting across eco-geoinformatics landscapes.

PLoS ONE

New developments at the Center for Engineering Strong-Motion Data (CESMD)

The Center for Engineering Strong-Motion Data (CESMD), an internationally utilized joint center of the U.S. Geological Survey (USGS) and the California Geological Survey (CGS), provides a single access point for earthquake strong-motion records and station metadata from the CGS California Strong-Motion Instrumentation Program (CSMIP), the USGS National Strong-Motion Project (NSMP), the USGS Advanced National Seismic System, and other affiliates. The CESMD has been continuously improving its webtools to facilitate the access of strong-motion data and metadata for use in post-earthquake response and for scientific and engineering research applications. The Center provides raw and processed strong-motion data via the Engineering Data Center (EDC) and the Virtual Data Center (VDC) web portals. This paper focuses on the strong-motion products provided by the EDC where more than 48,000 records with peak ground accelerations greater than 0.1% g from over 2400 earthquakes are currently hosted. and on the ongoing efforts to develop data access tools and applications. The new developments and ongoing efforts in the EDC include: 1) enhancements to the CESMD webservices to facilitate access to station metadata, earthquake information, and strong motion records 2) new features to the interactive map interface, improving the visualization and access to earthquake, station, and record information, 3) efforts to develop a new web application tool for data format conversion from a number of data formats, 4) efforts to unify varying waveform data formats into a consistent format, 5) ongoing efforts to compile seismic station site geology, measured or inferred Vs30 values, shear-wave profiles, NEHRP site class, and available structural instrument deployment schematics, and 6) a special studies pages for research topic-specific ground motion datasets that offer uniform processing of records from a variety of sources.

Conference Paper

Proceedings of the Fourth Glacier Bay Science Symposium

Foreword Glacier Bay was established as a National Monument in 1925, in part to protect its unique character and natural beauty, but also to create a natural laboratory to examine evolution of the glacial landscape. Today, Glacier Bay National Park and Preserve is still a place of profound natural beauty and dynamic landscapes. It also remains a focal point for scientific research and includes continuing observations begun decades ago of glacial processes and terrestrial ecosystems. In recent years, research has focused on glacial-marine interactions and ecosystem processes that occur below the surface of the bay. In October 2004, Glacier Bay National Park convened the fourth in a series of science symposiums to provide an opportunity for researchers, managers, interpreters, educators, students and the general public to share knowledge about Glacier Bay. The Fourth Glacier Bay Science Symposium was held in Juneau, Alaska, rather than at the Park, reflecting a desire to maximize attendance and communication among a growing and diverse number of stakeholders interested in science in the park. More than 400 people attended the symposium. Participants provided 46 oral presentations and 41 posters covering a wide array of disciplines including geology, glaciology, oceanography, wildlife and fisheries biology, terrestrial and marine ecology, socio-cultural research and management issues. A panel discussion focused on the importance of connectivity in Glacier Bay research, and keynote speakers (Gary Davis and Terry Chapin) spoke of long-term monitoring and ecological processes. These proceedings include 56 papers from the symposium. A summary of the Glacier Bay Science Plan-itself a subject of a meeting during the symposium and the result of ongoing discussions between scientists and resource managers-also is provided. We hope these proceedings illustrate the diversity of completed and ongoing scientific studies, conducted within the Park. To this end, we invited all presenters to submit brief technical summaries of their work, to capture the gist of their study and its main findings without an overload of details and methodology. We also asked authors to include a few words on the management implications of their work to help bridge the gap between scientists and managers in understanding how specific research questions may translate to management practice. Papers in this volume are laid out by subject matter, from terrestrial and freshwater subjects to glacial-marine geology, to the ecology of marine animals and ending with risk assessment, human impacts and science-management considerations. In summary, we hope the proceedings will serve as a useful reference to completed and ongoing studies in Glacier Bay National Park, and thereby provide park enthusiasts, scientists, and managers with a road map of scientific progress.

Scientific Investigations Report

The petrology of dispersed organic matter in sedimentary rocks: Review and update

Organic petrology developed from coal petrology, and, in the 1960s, it began to be applied to the study of dispersed organic matter (DOM) in sedimentary rocks other than coal. Over the last few decades, the petrology of DOM has been used to characterize organic matter in sedimentary basins with an emphasis on fossil fuel resource exploration. Today, due to the global research shift on topics related to climate, organic petrology has expanded into new application areas, such as geothermal exploration, biological carbon storage (biochar), disposal, and management of radioactive waste. From the publication of the International Handbook of Coal Petrology (mid-20th century) to the present day, a large number of standards, books, and articles have been published as a result of the work of organic petrographers and petrologists around the world and efforts of the International Committee for Coal and Organic Petrology (ICCP) and The Society for Organic Petrology (TSOP) to promote the study of organic petrology. The current fundamentals and standards of organic petrology provide the international scientific community with well-informed guidance and recommendations to promote in-depth research. However, this information is currently widely scattered, leading to discrepancies in methodology and terminology. Therefore, this paper aims to present a comprehensive review of the main analytical standard test methods and techniques currently used in the petrology of DOM under reflected white light and UV and blue-light excitation, and to provide an efficient and well-defined reference guide. Furthermore, considering the important role of the ICCP in the development of organic petrology since the 1950s, a brief review of the ongoing activities of ICCP dealing with DOM is also presented.

International Journal of Coal Geology

Geology of the Calamity Mesa quadrangle, Colorado

The series of Geologic Quadrangle Maps of the United States continues the series of quadrangle maps begun with the folios of the Geologic Atlas of the United States, which were published from 1894 to 1945. The present series consists of geologic maps, supplemented where possible by structure sections, columnar sections, and other graphic means of presenting geologic data, and accompanied by a brief explanatory text to make the maps useful for general scientific and economic purposes. Full description and interpretation of the geology of the areas shown on these maps are reserved for publication in other channels, such as the Bulletins and Professional Papers of the Geological Survey. Separate maps of the same areas, covering bedrock, surficial, engineering, and other phases of geology, may be published in the geologic quadrangle map series.

Colorado

Formulating the American Geophysical Union's Scientific Integrity and Professional Ethics Policy: Challenges and lessons learned

Creating an ethics policy for a large, diverse geosciences organization is a challenge, especially in the midst of the current contentious dialogue in the media related to such issues as climate change, sustaining natural resources, and responding to natural hazards. In 2011, the American Geophysical Union (AGU) took on this challenge, creating an Ethics Task Force to update their ethics policies to better support their new Strategic Plan and respond to the changing scientific research environment. Dialogue with AGU members and others during the course of creating the new policy unveiled some of the following issues to be addressed. Scientific results and individual scientists are coming under intense political and public scrutiny, with the efficacy of the science being questioned. In some cases, scientists are asked to take sides and/or provide opinions on issues beyond their research, impacting their objectivity. Pressure related to competition for funding and the need to publish high quality and quantities of papers has led to recent high-profile plagiarism, data fabrication, and conflict of interest cases. The complexities of a continuously advancing digital environment for conducting, reviewing, and publishing science has raised concerns over the ease of plagiarism, fabrication, falsification, inappropriate peer review, and the need for better accessibility of data and methods. Finally, students and scientists need consistent education and encouragement on the importance of ethics and integrity in scientific research. The new AGU Scientific Integrity and Ethics Policy tries to address these issues and provides an inspirational code of conduct to encourage a responsible, positive, open, honest scientific research environment.

Book chapter

Brown bear habituation to people - Safety, risks, and benefits

Recently, brown bear ( Ursus arctos ) viewing has increased in coastal Alaska and British Columbia, as well as in interior areas such as Yellowstone National Park. Viewing is most often being done under conditions that offer acceptable safety to both people and bears. We analyze and comment on the underlying processes that lead brown bears to tolerate people at close range. Although habituation is an important process influencing the distance at which bears tolerate people, other variables also modify levels of bear-to-human tolerance. Because bears may react internally with energetic costs before showing an overt reaction to humans, we propose a new term, the Overt Reaction Distance, to emphasize that what we observe is the external reaction of a bear. In this paper we conceptually analyze bear viewing in terms of benefits and risks to people and bears. We conclude that managers and policy-makers must develop site-specific plans that identify the extent to which bear-to-human habituation and tolerance will be permitted. The proposed management needs scientific underpinning. It is our belief that bear viewing, where appropriate, may promote conservation of bear populations, habitats, and ecosystems as it instills respect and concern in those who participate.

Wildlife Society Bulletin

Geologic columns for the ICDP-USGS Eyreville B core, Chesapeake Bay impact structure: Impactites and crystalline rocks, 1766 to 1096 m depth

The International Continental Scientific Drilling Program (ICDP)-U.S. Geological Survey (USGS) Eyreville drill cores from the Chesapeake Bay impact structure provide one of the most complete geologic sections ever obtained from an impact structure. This paper presents a series of geologic columns and descriptive lithologic information for the lower impactite and crystalline-rock sections in the cores. The lowermost cored section (1766-1551 m depth) is a complex assemblage of mica schists that commonly contain graphite and fibrolitic sillimanite, intrusive granite pegmatites that grade into coarse granite, and local zones of mylonitic deformation. This basement-derived section is variably overprinted by brittle cataclastic fabrics and locally cut by dikes of polymict impact breccia, including several suevite dikes. An overlying succession of suevites and lithic impact breccias (1551-1397 m) includes a lower section dominated by polymict lithic impact breccia with blocks (up to 17 m) and boulders of cataclastic gneiss and an upper section (above 1474 m) of suevites and clast-rich impact melt rocks. The uppermost suevite is overlain by 26 m (1397-1371 m) of gravelly quartz sand that contains an amphibolite block and boulders of cataclasite and suevite. Above the sand, a 275-m-thick allochthonous granite slab (1371-1096 m) includes gneissic biotite granite, fine- and medium-to-coarse-grained biotite granites, and red altered granite near the base. The granite slab is overlain by more gravelly sand, and both are attributed to debris-avalanche and/or rockslide deposition that slightly preceded or accompanied seawater-resurge into the collapsing transient crater.

Chesapeake Bay

Opportunities for improved consideration of cultural benefits in environmental decision-making

Many cultural benefits of ecosystem services (ES) are difficult to capture in standard ES assessments. Scholars and practitioners often respond to this gap by seeking to develop new scientific methods to capture and integrate the plural values associated with diverse cultural benefits categories. This increasing emphasis on value pluralism represents an essential step toward recognitional justice within ES theory and practice. However, current approaches continue to rest on the assumption that ES-knowledge is only made available to decision-makers through scientific documentation. As a result, scholars and decision-makers fail to account for the role of knowledge pluralism as a core element of recognitional justice, and a key enabling factor for meaningful consideration of the plural values linked to cultural benefits of ES. In this paper, we contribute to a pluralist theory of cultural-benefits-knowledge, and ES-knowledge more broadly. Using a critical interpretive synthesis of environmental management literature, we conceptualize a wider range of knowledge forms that convey cultural benefits, based on the knowledge-as-practice concept in addition to the knowledge-as-product concept more familiar to Western actors. As part of the synthesis, we explore when and how diverse forms of cultural-benefits-knowledge intersect with decision-making processes, and the value aspects and categories of cultural benefits most frequently conveyed by each form of knowledge. Our synthesizing argument offers a critique of the concept of “ES-knowledge-use,” proposing a shift in focus toward “learning opportunities” that exist across phases of decision-making. We demonstrate that attention to a greater diversity of knowledge forms (knowledge pluralism), and a fuller spectrum of opportunities to integrate them (learning opportunities) can support more meaningful consideration of the plural values associated with cultural benefits of ES (value pluralism). In combination, attention to knowledge pluralism and value pluralism can help bring the ES approach into alignment with environmental justice through the recognition and legitimization of multiple identities, well-beings, and human-nature relationships, as reflected in meaningful consideration of the diverse cultural benefits of ES.

Ecosystem Services

Management of fish populations in large rivers: a review of tools and approaches

In common with most branches of science, the management of riverine fish populations is characterised by reductionist and isolationist philosophies. Traditional fish management focuses on stocking and controls on fishing. This paper presents a consensus of scientists involved in the LARS workshop on the management of fish populations in large rivers. A move towards a more holistic philosophy is advocated, with fish management forming an integral part of sustainable river development. Based upon a questionnaire survey of LARS members, with wide-ranging expertise and experience from all parts of the world, lists of management tools currently in use are presented. Four categories of tools are described: flow, water-quality, habitat, and biological. The potential applications of tools for fish management in large rivers is discussed and research needs are identified. The lack of scientific evaluations of the different tools remains the major constraint to their wider application.

Conference Paper

The FOBIMO (FOraminiferal BIo-MOnitoring) initiative—Towards a standardised protocol for soft-bottom benthic foraminiferal monitoring studies

The European Community Marine Strategy Framework Directive (MSFD) was established to provide guidelines for monitoring the quality of marine ecosystems. Monitoring the status of marine environments is traditionally based on macrofauna surveys, for which standardised methods have been established. Benthic foraminifera are also good indicators of environmental status because of their fast turnover rates, high degree of specialisation, and the preservation of dead assemblages in the fossil record. In spite of the growing interest in foraminiferal bio-monitoring during the last decades, no standardised methodology has been proposed until today. The aim of the FOraminiferal BIo-MOnitoring (FOBIMO) expert workshop, held in June 2011 at Fribourg, Switzerland, which assembled 37 scientists from 24 research groups and 13 countries, was to develop a suite of standard methods. This paper presents the main outcome of the workshop, a list of motivated recommendations with respect to sampling devices, sample storage, treatment, faunal analysis and documentation. Our recommendations fulfil the criteria imposed both by scientific rigour and by the practical limitations of routine studies. Hence, our aim is to standardise methodologies used in bio-monitoring only and not to limit the use of different methods in pure scientific studies. Unless otherwise stated, all recommendations concern living (stained) benthic foraminiferal assemblages. We have chosen to propose two types of recommendations. Mandatory recommendations have to be followed if a study wants to qualify as sound and compatible to the norms. The most important of these recommendations are the interval from 0 to 1 cm below the sediment surface has to be sampled, and an interface corer or box corer that keeps the sediment surface intact is to be used for offshore surveys. A grab sampler must not be deployed in soft sediments. Three replicate samples are to be taken and analysed separately. Samples are to be washed on a 63-μm screen, and the living benthic foraminiferal fauna of the > 125 μm fraction is to be analysed. Splits are to be picked and counted entirely, and all counted foraminifera from at least one replicate per station have to be stored in micropalaeontological slides. Census data, supplementary laboratory data and microslides have to be archived. Advisory recommendations are to sample in autumn, to have a sample size of 50 cm 2 or a tube of 8 cm inner diameter, to use > 70% ethanol as a preservative, rose Bengal at a concentration of 2 grams per litre for staining, and a staining time of at least 14 days. The split size should be defined by a target value of 300 specimens, heavy liquid separation should be avoided, and the 63–125 μm fraction or deeper sediment levels may be considered in some environments. We are convinced that the application of this protocol by a large number of scientists is a necessary first step to a general acceptance of benthic foraminifera as a reliable tool in bio-monitoring studies.

Marine Micropaleontology

A bootstrap method for estimating uncertainty of water quality trends

Estimation of the direction and magnitude of trends in surface water quality remains a problem of great scientific and practical interest. The Weighted Regressions on Time, Discharge, and Season (WRTDS) method was recently introduced as an exploratory data analysis tool to provide flexible and robust estimates of water quality trends. This paper enhances the WRTDS method through the introduction of the WRTDS Bootstrap Test (WBT), an extension of WRTDS that quantifies the uncertainty in WRTDS-estimates of water quality trends and offers various ways to visualize and communicate these uncertainties. Monte Carlo experiments are applied to estimate the Type I error probabilities for this method. WBT is compared to other water-quality trend-testing methods appropriate for data sets of one to three decades in length with sampling frequencies of 6–24 observations per year. The software to conduct the test is in the EGRETci R-package.

Environmental Modelling and Software

The study of fresh-water lake ice using multiplexed imaging radar

The study of ice in the upper Great Lakes, both from the operational and the scientific points of view, is receiving continued attention. Quantitative and qualitative field work is being conducted to provide the needed background for accurate interpretation of remotely sensed data. The data under discussion in this paper were obtained by a side-looking multiplexed airborne radar (SLAR) supplemented with ground-truth data. Because of its ability to penetrate adverse weather, radar is an especially important instrument for monitoring ice in the upper Great Lakes. It has previously been shown that imaging radars can provide maps of ice cover in these areas. However, questions concerning both the nature of the surfaces reflecting radar energy and the interpretation of the radar imagery continually arise. Our analysis of ice in Whitefish Bay (Lake Superior) indicates that the combination of the ice/water interlace and the ice/air interface is the major contributor to the radar backscatter as seen on the imagery At these frequencies the ice has a very low relative dielectric permittivity (< 3.0) and a low loss tangent Thus, this ice is somewhat transparent to the energy used by the imaging SLAR system. The ice types studied include newly formed black ice, pancake ice, and frozen and consolidated pack and brash ice. Although ice thickness cannot be measured directly from the received signals, it is suspected that by combining the information pertaining to radar backscatter with data on the meteorological and sea-state history of the area, together with some basic ground truth, better estimates of the ice thickness may be provided. In addition, certain ice features (e.g. ridges, ice-foot formation, areas of brash ice) may be identified with reasonable confidence. There is a continued need for additional ground work to verify the validity of imaging radars for these types of interpretations.

Upper Great Lakes

Pollution of Illinois and Mississippi Rivers by Chicago sewage, a digest of the testimony taken in the case of the State of Missouri v. the State of Illinois and the Sanitary District of Chicago

The testimony taken in the suit of the State of Missouri against the State of Illinois and the sanitary district of Chicago comprises the best symposium on river pollution, its biological and chemical aspects, and its general and special sanitary significance that has ever been assembled. The contentions of both parties to the suit' are supported by the most eminently qualified men in the United States. The evidence presented and the discussions recorded are therefore of unique importance. The final record of testimony occupies 8,000 printed pages, much of which is irrelevant. This digest of testimony is the result of an attempt to recover the valuable material and present it in concise form. A consistent endeavor has been made by the reviewer to eliminate all personal opinions with reference to the issue and to make an impartial presentation of so much of the testimony as in his opinion appears to be relevant and of scientific importance. It will be well to remember in this connection that any digest of so large a volume of testimony must be the result of a final exercise of personal opinion by the reviewer as to those parts which may best be excluded. Naturally opinions will differ on this point; therefore it will be strange if many of those familiar with the case do not find that certain portions of testimony which they consider most important are passed over in this digest without reference. Controversies between counsel, objections to the admission of testimony, legal technicalities and quibbles, badgering cross-examination, and in general all the testimony introduced for purposes of mere corroboration have been disregarded. The object has been to present a faithful statement of the scientific phases of the testimony to the exclusion, if need be, of the legal aspect of the case.

Illinois, Missouri

Adaptive Management Implementation: Glen Canyon Dam Adaptive Management Program Trinity River Restoration Program

Two adaptive management programs, the Glen Canyon Dam Adaptive Management Program (GCDAMP) and the Trinity River Restoration Program (TRRP) are examined. In both cases, the focus is on managing the aquatic and riparian systems downstream of a large dam and water supply project. The status of the two programs, lessons learned by the program managers and the Adaptive Environmental Assessment and Management (AEAM) evolution of the TRRP are discussed. The Trinity River illustrates some of the scientific uncertainities that a program faces and the ways the program evolves from concept through implementation.

Conference Paper