SEARCH · USGS Science

Results for “Freshwater Biology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 235 records · Page 13Linked to original sources

USGS2008

Assessing streamflow characteristics as limiting factors on benthic invertebrate assemblages in streams across the western United States

1. Human use of land and water resources modifies many streamflow characteristics, which can have significant ecological consequences. Streamflow and invertebrate data collected at 111 sites in the western U.S.A. were analysed to identify streamflow characteristics (magnitude, frequency, duration, timing and variation) that are probably to limit characteristics of benthic invertebrate assemblages (abundance, richness, diversity and evenness, functional feeding groups and individual taxa) and, thus, would be important for freshwater conservation and restoration. Our analysis investigated multiple metrics for each biological and hydrological characteristic, but focuses on 14 invertebrate metrics and 13 streamflow metrics representing the key associations between streamflow and invertebrates. 2. Streamflow is only one of many environmental and biotic factors that influence the characteristics of invertebrate assemblages. Although the central tendency of invertebrate assemblage characteristics may not respond to any one factor across a large region like the western U.S.A., we postulate that streamflow may limit some invertebrates. To assess streamflow characteristics as limiting factors on invertebrate assemblages, we developed a nonparametric screening procedure to identify upper (ceilings) or lower (floors) limits on invertebrate metrics associated with streamflow metrics. Ceilings and floors for selected metrics were then quantified using quantile regression. 3. Invertebrate assemblages had limits associated with all streamflow characteristics that we analysed. Metrics of streamflow variation at daily to inter-annual scales were among the most common characteristics associated with limits on invertebrate assemblages. Baseflow recession, daily variation and monthly variation, in streamflow were associated with the largest number of invertebrate metrics. Since changes in streamflow variation are often a consequence of hydrologic alteration, they may serve as useful indicators of ecologically significant changes in streamflow and as benchmarks for managing streamflow for ecological objectives. 4. Relative abundance of Plecoptera, richness of non-insect taxa and relative abundance of intolerant taxa were associated with multiple streamflow metrics. Metrics of sensitive taxa (Ephemeroptera, Plecoptera and Trichoptera), and intolerant taxa generally had ceilings associated with flow metrics while metrics of tolerant taxa, non-insects, dominance and chironomids generally had floors. Broader characteristics of invertebrate assemblages such as abundance and richness had fewer limits, but these limits were nonetheless associated with a broad range of streamflow characteristics.

Freshwater Biology↗

USGS2008

Magnetic resonance imaging of live freshwater mussels (Unionidae)

We examined the soft tissues of live freshwater mussels, Eastern elliptio Elliptio complanata , via magnetic resonance imaging (MRI), acquiring data with a widely available human whole-body MRI system. Anatomical features depicted in the profile images included the foot, stomach, intestine, anterior and posterior adductor muscles, and pericardial cavity. Noteworthy observations on soft tissue morphology included a concentration of lipids at the most posterior aspect of the foot, the presence of hemolymph-filled fissures in the posterior adductor muscle, the presence of a relatively large hemolymph-filled sinus adjacent to the posterior adductor muscle (at the ventral-anterior aspect), and segmentation of the intestine (a diagnostic description not reported previously in Unionidae). Relatively little is known about the basic biology and ecological physiology of freshwater mussels. Traditional approaches for studying anatomy and tissue processes, and for measuring sub-lethal physiological stress, are destructive or invasive. Our study, the first to evaluate freshwater mussel soft tissues by MRI, clarifies the body plan of unionid mussels and demonstrates the efficacy of this technology for in vivo evaluation of the structure, function, and integrity of mussel soft tissues.

Invertebrate Biology↗

USGS2012

Linking physical monitoring to coho and Chinook salmon populations in the Redwood Creek Watershed, California—Summary of May 3–4, 2012 Workshop

On Thursday, May 3, 2012, a science workshop was held at the Redwood National and State Parks (RNSP) office in Arcata, California, with researchers and resource managers working in RNSP to share data and expert opinions concerning salmon populations and habitat in the Redwood Creek watershed. The focus of the workshop was to discuss how best to synthesize physical and biological data related to the freshwater and estuarine phases of salmon life cycles in order to increase the understanding of constraints on salmon populations. The workshop was hosted by the U.S. Geological Survey (USGS) Status and Trends (S&T) Program National Park Monitoring Project ( http://www.fort.usgs.gov/brdscience/ParkMonitoring.htm ), which supports USGS research on priority topics (themes) identified by the National Park Service (NPS) Inventory and Monitoring Program (I&M) and S&T. The NPS has organized more than 270 parks with significant natural resources into 32 Inventory and Monitoring (I&M) Networks ( http://science.nature.nps.gov/im/networks.cfm ) that share funding and core professional staff to monitor the status and long-term trends of selected natural resources ( http://science.nature.nps.gov/im/monitor ). All 32 networks have completed vital signs monitoring plans (available at http://science.nature.nps.gov/im/monitor/MonitoringPlans.cfm ), containing background information on the important resources of each park, conceptual models behind the selection of vital signs for monitoring the condition of natural resources, and the selection of high priority vital signs for monitoring. Vital signs are particular physical, chemical, and biological elements and processes of park ecosystems that represent the overall health or condition of the park, known or hypothesized effects of stressors, or elements that have important human values (Fancy and others, 2009). Beginning in 2009, the I&M program funded projects to analyze and synthesize the biotic and abiotic data generated by vital signs monitoring and previous in-park natural resource monitoring and inventories to provide useful information, models, and tools to park managers for addressing resource management issues. The workshop described in this report is an element of the project funded by USGS NPS-I&M program to conduct a synthesis of salmon-related datasets in the Klamath (KLMN) and San Francisco Bay Area (SFAN) networks of national parks. The synthesis focused on four park units: Redwood National Park (KLMN), Point Reyes National Seashore, Muir Woods National Monument, and Golden Gate National Recreation Area (SFAN).

California↗

USGS2001

Survey protocol for assessment of endangered freshwater mussels the Allegheny River, Pennsylvania

The United States Endangered Species Act (ESA) requires a biological assessment of any activity that is authorized, funded, or carried out by a federal agency and likely to affect a federally listed endangered species or its critical habitat. We developed a standardized survey protocol for biological assessments of the effects of bridge replacements on 2 federally listed endangered freshwater mussels, Epioblasma torulosa rangiana and Pleurobema clava, found in the Allegheny River, Pennsylvania. The protocol combines qualitative sampling to determine species present with quantitative sampling to estimate density. Data on species present satisfy the minimum requirement of a biological assessment, whereas estimates of density are needed to assess the number of individuals that would die as a result of bridge replacement. Some excavation of substrate is necessary for unbiased population estimates because of species and sex-specific differences in detection at the substrate surface. We reduced the amount of excavation and cost of the survey by using a statistical sampling technique called double sampling, which uses counts from excavating a subset of quadrats to calibrate counts from searching the substrate surface of all quadrats. We applied the survey protocol to the Allegheny River at West Hickory where E. t. rangiana was the 3 rd and P. clava was the 4 th most abundant mussel at the site. Only 31% of P. clava and 52% of E. t. rangiana (80% of females, 45% of males) were detected at the substrate surface. We estimated that 9173 (95% CI: 6309–13,336) E. t. rangiana and 7010 (95% CI: 4462–11,013) P. clava lived within 50 m of the existing bridge and would be affected immediately by bridge construction. (Population estimates did not include mussels too small to be retained on a 6.35-mm-mesh sieve.) Application of the protocol is not limited to biological assessment under the ESA, but is appropriate where site-specific status of freshwater mussel populations is required.

Pennsylvania↗

USGS2019

The effectiveness of non-native fish removal techniques in freshwater ecosystems: a systematic review

In aquatic systems, biological invasions can result in adverse ecological effects. Management techniques available for non-native fish removal programs (including eradication and population size control) vary widely, but include chemicals, harvest regimes, physical removal, or biological control. For management agencies, deciding on what non-native fish removal program to use has been challenging because there is little reliable information about the relative effectiveness of these measures in controlling or eradicating non-native fish. We conducted a systematic review, including a critical appraisal of study validity, to assess the effectiveness of different non-native fish removal methods, and to identify the factors that influence the overall success rate of each type of method. We found 95 relevant studies, generating 158 data sets. The evidence base was dominated by poorly documented studies with inadequate experimental designs (76% of removal projects). When the management goal was non-native fish eradication, chemical treatments were relatively successful (antimycin 75%; rotenone 89%) compared to other interventions. Electrofishing and passive removal measure studies indicated successful eradication was possible (58% each respectively) but required intensive effort and multiple treatments over a number of years. Of these studies with sufficient information, electrofishing had the highest success for population size control (56% of data sets). Overall, inadequate data quality and completeness severely limited our ability to make strong conclusions about the relationships between non-native fish abundance and different methods of eradication and population control, and the factors influencing the overall success rate of each method. Our review highlights that there is considerable scope for improving our evaluations of non-native fish removal methods. It is recommended that programs should have explicitly stated objectives, better data reporting, and study designs that (when possible and appropriate) incorporate replicated and controlled investigations with rigorous, long-term quantitative monitoring. Future research on the effectiveness of non-native fish removal methods should focus on: (1) the efficacy of existing or potentially new removal measures in larger, more complex environments; (2) a broader range of removal measures in general, and (3) phenotypic characteristics of individual fish within a population that fail to be eradicated or controlled.

Environmental Reviews↗

USGS2014

Predicting probability of occurrence and factors affecting distribution and abundance of three Ozark endemic crayfish species at multiple spatial scales

Crayfishes and other freshwater aquatic fauna are particularly at risk globally due to anthropogenic demand, manipulation and exploitation of freshwater resources and yet are often understudied. The Ozark faunal region of Missouri and Arkansas harbours a high level of aquatic biological diversity, especially in regard to endemic crayfishes. Three such endemics, Orconectes eupunctus , Orconectes marchandi and Cambarus hubbsi , are threatened by limited natural distribution and the invasions of Orconectes neglectus . We examined how natural and anthropogenic abiotic factors influence these three species across multiple spatial scales. Local and landscape environmental variables were used as predictors in classification and regression tree models at stream segment and segmentshed scales to determine their relation to presence/absence and density of the three species. Orconectes eupunctus presence was positively associated with stream size, current velocity and spring flow volume. Orconectes marchandi presence was predicted primarily by dolomite geology and water chemistry variables. Cambarus hubbsi was associated with larger stream size, with highest densities occurring in deep waters. Stream segment and segmentshed scale models were similar, but there were important differences based on species and response variables (presence/absence versus density). Stream segment scale models consistently performed better than or equal to segmentshed scale models. Anthropogenic abiotic environmental variables were of minor importance in most models, with the exception of O. marchandi being negatively related to road density and human population density. Classification tree models predicting distribution performed well when compared to random assignment, but regression trees were generally poor in explaining variation in density. We found that a range of environmental variables were important in predicting crayfish distribution and abundance at multiple spatial scales and their importance was species-, response variable- and scale dependent. We would encourage others to examine the influence of spatial scale on species distribution and abundance patterns.

Arkansas↗

USGS2020

Resolving species boundaries in the critically imperiled freshwater mussel species, Fusconaia mitchelli (Bivalvia: Unionidae)

Species are a fundamental unit of biology, and defining accurate species boundaries is integral to effective conservation and management of imperiled taxa. Freshwater mussels (Bivalvia: Unionidae) are among the most imperiled groups of organisms in North America, yet species boundaries remain uncertain for many taxa. The False Spike, Fusconaia mitchelli (Simpson in Dall, 1895), is a freshwater mussel considered to be endemic to central Texas (Brazos, Colorado, and Guadalupe drainages). Recent research revealed significant intraspecific genetic variation between geographically separated populations of F . mitchelli , which could be indicative of speciation; however, small sample sizes for several of the populations precluded formal taxonomic revision. Here, we increase taxon sampling and use multilocus DNA sequence data and traditional morphometrics to re‐evaluate species boundaries in F . mitchelli . We sequenced three loci: the protein‐coding mitochondrial DNA genes cytochrome c oxidase subunit 1 and NADH dehydrogenase 1 , and the nuclear internal transcribed spacer 1 . Phylogenetic analyses depicted deep genetic divergence between F . mitchelli in the Guadalupe and those in the Brazos and Colorado drainages, which was further supported by available biogeographic information. Morphometric analyses and coalescent‐based species delimitation models integrating both DNA sequence and morphological data provided strong support for the divergence observed between the two geographically isolated clades of F . mitchelli . Based on these results, we revise taxonomy accordingly by elevating the junior synonym Fusconaia iheringi (Wright, 1898) to represent the Brazos and Colorado populations and restrict the distribution of F . mitchelli to the Guadalupe River drainage. Our findings may impact pending management decisions to protect F . mitchelli under the U.S. Endangered Species Act.

Journal of Zoological Systematics and Evolutionary↗

USGS1996

A preliminary evaluation of sediment quality assessment values for freshwater ecosystems

Sediment quality assessment values were developed using a weight of evidence approach in which matching biological and chemical data from numerous modelling, laboratory, and field studies performed on freshwater sediments were compiled and analyzed. Two assessment values (a threshold effect level (TEL) and a probable effect level(PEL)) were derived for 23 substances, including eight trace metals, six individual polycyclic aromatic hydrocarbons (PAHs), total polychlorinated biphenyls (PCBs), and eight pesticides. The two values defined three ranges of chemical concentrations; those that were (1) rarely, (2) occasionally, and (3) frequently associated with adverse biological effects. An evaluation of the percent incidence of adverse biological effects within the three concentration ranges indicated that the reliability of the TELs (i.e., the degree to which the TELs represent concentrations within the data set below which adverse effects rarely occur) was consistently good. However, this preliminary evaluation indicated that most of the PELs were less reliable (i.e., they did not adequately represent concentrations within the data set above which adverse effects frequently occur). Nonetheless, these values were often comparable to other biological effects-based assessment values (which were themselves reliable), which increased the level of confidence that could be placed in our values. This method is being used as a basis for developing national sediment quality guidelines for freshwater systems in Canada and sediment effect concentrations as part of the Assessment and Remediation of Contaminated Sediments (ARCS) program in the Great Lakes.

Journal of Great Lakes Research↗

USGS2015

Effects of elevated water temperature on physiological responses in adult freshwater mussels

Freshwater mussels (order Unionoida) face multiple environmental stressors, which pose serious conservation challenges to this diverse assemblage of aquatic invertebrates. Of these stressors, elevated water temperature from global climate change and other anthropogenic sources may be the most ubiquitous and could be placing many mussel populations dangerously close to their thermal maxima. We tested the hypothesis that elevated water temperatures (20, 25, 30 and 35 °C) adversely affected physiological responses in adults of four North American species of mussels ( Amblema plicata , Elliptio complanata, Fusconaia flava and Lampsilis cardium) in 21-d laboratory tests. Oxygen consumption rates were directly affected by temperature in E. complanata and L. cardium , and indirectly affected by temperature in A. plicata and F. flava . Rates of O 2 consumption were generally positively correlated with water temperature. Ammonium excretion rates varied significantly with temperature in E. complanata and generally increased with temperature. The amount of O 2 consumed relative to nitrogen excreted (O : N ratio), varied significantly with temperature in A. plicata , E. complanata and F. flava . The tissue condition index varied among temperatures and species. These data suggest that elevated temperatures can alter metabolic rates in native mussels and may decrease the amount of energy that is available for key biological processes, such as survival, growth and reproduction.

Freshwater Biology↗

USGS2023

Competition between dissolved organic matter and freshwater plankton control methylmercury isotope fractionation during uptake and photochemical demethylation

Isotope fractionation related to photochemical reactions and planktonic uptake at the base of the food web is a major uncertainty in the biological application of mercury (Hg) stable isotopes. In freshwater systems, it is unclear how competitive interactions among methylmercury (MeHg), dissolved organic matter (DOM), and phytoplankton govern the magnitude of mass-dependent and mass-independent fractionation. This study investigated how DOM alters rates of planktonic MeHg uptake and photodegradation and corresponding Hg isotope fractionation in the presence of freshwater phytoplankton species, Raphidocelis subcapitata . Outdoor sunlight exposure experiments utilizing R. subcapitata were performed in the presence of different DOM samples using environmentally relevant ratios of MeHg-DOM thiol groups. The extent of Δ 199 Hg in phytoplankton incubations (2.99‰ St. Louis River HPOA, 1.88‰ Lake Erie HPOA) was lower compared to paired abiotic control experiments (4.29 and 2.86‰, respectively) after ∼30 h of irradiation, resulting from cell shading or other limiting factors reducing the extent of photodemethylation. Although the Δ 199 Hg/Δ 201 Hg ratio was uniform across experiments (∼1.4), Δ 199 Hg/δ 202 Hg slopes varied dramatically (from −0.96 to 15.4) across incubations with R. subcapitata and DOM. In addition, no evidence of Hg isotope fractionation was observed within R. subcapitata cells. This study provides a refined examination of Hg isotope fractionation markers for key processes occurring in the lower food web prior to bioaccumulation, critical for accurately accounting for the photochemical processing of Hg isotopes across a wide spectrum of freshwater systems.

ACS Earth and Space Chemistry↗

USGS2013

Use of surrogate technologies to estimate suspended sediment in the Clearwater River, Idaho, and Snake River, Washington, 2008-10

Elevated levels of fluvial sediment can reduce the biological productivity of aquatic systems, impair freshwater quality, decrease reservoir storage capacity, and decrease the capacity of hydraulic structures. The need to measure fluvial sediment has led to the development of sediment surrogate technologies, particularly in locations where streamflow alone is not a good estimator of sediment load because of regulated flow, load hysteresis, episodic sediment sources, and non-equilibrium sediment transport. An effective surrogate technology is low maintenance and sturdy over a range of hydrologic conditions, and measured variables can be modeled to estimate suspended-sediment concentration (SSC), load, and duration of elevated levels on a real-time basis. Among the most promising techniques is the measurement of acoustic backscatter strength using acoustic Doppler velocity meters (ADVMs) deployed in rivers. The U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, Walla Walla District, evaluated the use of acoustic backscatter, turbidity, laser diffraction, and streamflow as surrogates for estimating real-time SSC and loads in the Clearwater and Snake Rivers, which adjoin in Lewiston, Idaho, and flow into Lower Granite Reservoir. The study was conducted from May 2008 to September 2010 and is part of the U.S. Army Corps of Engineers Lower Snake River Programmatic Sediment Management Plan to identify and manage sediment sources in basins draining into lower Snake River reservoirs. Commercially available acoustic instruments have shown great promise in sediment surrogate studies because they require little maintenance and measure profiles of the surrogate parameter across a sampling volume rather than at a single point. The strength of acoustic backscatter theoretically increases as more particles are suspended in the water to reflect the acoustic pulse emitted by the ADVM. ADVMs of different frequencies (0.5, 1.5, and 3 Megahertz) were tested to target various sediment grain sizes. Laser diffraction and turbidity also were tested as surrogate technologies. Models between SSC and surrogate variables were developed using ordinary least-squares regression. Acoustic backscatter using the high frequency ADVM at each site was the best predictor of sediment, explaining 93 and 92 percent of the variability in SSC and matching sediment sample data within +8.6 and +10 percent, on average, at the Clearwater River and Snake River study sites, respectively. Additional surrogate models were developed to estimate sand and fines fractions of suspended sediment based on acoustic backscatter. Acoustic backscatter generally appears to be a better estimator of suspended sediment concentration and load over short (storm event and monthly) and long (annual) time scales than transport curves derived solely from the regression of conventional sediment measurements and streamflow. Changing grain sizes, the presence of organic matter, and aggregation of sediments in the river likely introduce some variability in the model between acoustic backscatter and SSC.

Idaho;Washington↗

USGS2014

Freshwater mussels of Florida

An exhaustive guide to all aspects of the freshwater mussel fauna in Florida, Freshwater Mussels of Florida covers the ecology, biology, distribution, and conservation of the many species of bivalve mollusks in the Sunshine State. In the past three decades, researchers, the public, businesses that depend on wildlife, and policy makers have given more attention to the threatened natural diversity of the Southeast, including freshwater mussels. This compendium meets the increasingly urgent need to catalog this imperiled group of aquatic organisms in the United States.

Florida↗

USGS2013

Relationships between nutrient enrichment, pleurocerid snail density and trematode infection rate in streams

Summary 1. Nutrient enrichment is a widespread environmental problem in freshwater ecosystems. Eutrophic conditions caused by nutrient enrichment may result in a higher prevalence of infection by trematode parasites in host populations, due to greater resource availability for the molluscan first intermediate hosts. 2. This study examined relationships among land use, environmental variables indicating eutrophication, population density of the pleurocerid snail, Leptoxis carinata, and trematode infections. Fifteen study sites were located in streams within the Shenandoah River catchment (Virginia, U.S.A.), where widespread nutrient enrichment has occurred. 3. Snail population density had a weak positive relationship with stream water nutrient concentration. Snail population density also increased as human activities within stream catchments increased, but density did not continue to increase in catchments where anthropogenic disturbance was greatest. 4. Cercariae from five families of trematodes were identified in L. carinata, and infection rate was generally low (<10%). Neither total infection rate nor the infection rate of individual trematode types showed a positive relationship with snail population density, nutrients or land use. 5. There were statistically significant but weak relationships between the prevalence of infection by two trematode families and physical and biological variables. The prevalence of Notocotylidae was positively related to water depth, which may be related to habitat use by definitive hosts. Prevalence of Opecoelidae had a negative relationship with orthophosphate concentration and a polynomial relationship with chlorophyll a concentration. Transmission of Opecoelid trematodes between hosts may be inhibited by eutrophic conditions. 6. Leptoxis carinata appears to be a useful species for monitoring the biological effects of eutrophication and investigating trematode transmission dynamics in lotic systems.

Virginia↗

USGS2016

Development and application of freshwater sediment-toxicity benchmarks for currently used pesticides

Sediment-toxicity benchmarks are needed to interpret the biological significance of currently used pesticides detected in whole sediments. Two types of freshwater sediment benchmarks for pesticides were developed using spiked-sediment bioassay (SSB) data from the literature. These benchmarks can be used to interpret sediment-toxicity data or to assess the potential toxicity of pesticides in whole sediment. The Likely Effect Benchmark (LEB) defines a pesticide concentration in whole sediment above which there is a high probability of adverse effects on benthic invertebrates, and the Threshold Effect Benchmark (TEB) defines a concentration below which adverse effects are unlikely. For compounds without available SSBs, benchmarks were estimated using equilibrium partitioning (EqP). When a sediment sample contains a pesticide mixture, benchmark quotients can be summed for all detected pesticides to produce an indicator of potential toxicity for that mixture. Benchmarks were developed for 48 pesticide compounds using SSB data and 81 compounds using the EqP approach. In an example application, data for pesticides measured in sediment from 197 streams across the United States were evaluated using these benchmarks, and compared to measured toxicity from whole-sediment toxicity tests conducted with the amphipod Hyalella azteca (28-d exposures) and the midge Chironomus dilutus (10-d exposures). Amphipod survival, weight, and biomass were significantly and inversely related to summed benchmark quotients, whereas midge survival, weight, and biomass showed no relationship to benchmarks. Samples with LEB exceedances were rare (n = 3), but all were toxic to amphipods (i.e., significantly different from control). Significant toxicity to amphipods was observed for 72% of samples exceeding one or more TEBs, compared to 18% of samples below all TEBs. Factors affecting toxicity below TEBs may include the presence of contaminants other than pesticides, physical/chemical characteristics of sediment, and uncertainty in TEB values. Additional evaluations of benchmarks in relation to sediment chemistry and toxicity are ongoing.

Science of the Total Environment↗

USGS1995

Isohaline position as a habitat indicator for estuarine populations

Populations of native and introduced aquatic organisms in the San Francisco Bay/Sacramento-San Joaquin Delta Estuary ("Bay/Delta") have undergone significant declines over the past two decades. Decreased river inflow due to drought and increased freshwater diversion have contributed to the decline of at least some populations. Effective management of the estuary's biological resources requires a sensitive indicator of the response to freshwater inflow that has ecological significance, can be measured accurately and easily, and could be used as a "policy" variable to set standards for managing freshwater inflow. Positioning of the 2% (grams of salt per kilogram of seawater) bottom salinity value along the axis of the estuary was examined for this purpose. The 2% bottom salinity position (denoted by X 2 ) has simple and significant statistical relationships with annual measures of many estuarine resources, including the supply of phytoplankton and phytoplankton-derived detritus from local production and river loading; benthic macroinvertebrates (molluscs); mysids and shrimp; larval fish survival; and the abundance of planktivorous, piscivorous, and bottom-foraging fish. The actual mechanisms are understood for only a few of these populations. X 2 also satisfies other recognized requirements for a habitat indicator and probably can be measured with greater accuracy and precision than alternative habitat indicators such as net freshwater inflow into the estuary. The 2% value may not have special ecological significance for other estuaries (in the Bay/Delta, it marks the locations of an estuarine turbidity maximum and peaks in the abundance of several estuarine organisms), but the concept of using near-bottom isohaline position as a habitat indicator should be widely applicable. Although X 2 is a sensitive index of the estuarine community's response to net freshwater inflow, other hydraulic features of the estuary also determine population abundances and resource levels. In particular, diversion of water for export from or consumption within the estuary can have a direct effect on population abundance independent of its effect on X 2 . The need to consider diversion, in addition to X 2 , for managing certain estuarine resources is illustrated using striped bass survival as an example. The striped bass survival data were also used to illustrate a related important point: incorporating additional explanatory variables may decrease the prediction error for a population or process, but it can increase the uncertainty in parameter estimates and management strategies based on these estimates. Even in cases where the uncertainty is currently too large to guide management decisions, an uncertainty analysis can identify the most practical direction for future data acquisition.

California↗

USGS2020

Seasonal habitat use indicates that depth may mediate the potential for invasive round goby impacts in inland lakes

The round goby ( Neogobius melanostomus ) is among the fastest-spreading introduced aquatic species in North America and is radiating inland from the Great Lakes into freshwater ecosystems across the landscape. Predicting and managing the impacts of round gobies requires information on the factors influencing their distribution in habitats along the invasion front, yet this information is not available for many recently invaded ecosystems. We evaluated the seasonal habitat use and biomass of round gobies in an inland temperate lake to define the spatiotemporal scope of biological interactions at the leading edge of the round goby invasion. Using novel statistical approaches, we combined hierarchical models that control for imperfect species detection with flexible smooth terms to describe non-linear relationships between round goby abundance and environmental gradients. Subsequently, we generated accurate detection-corrected estimates of the standing stock biomass of round gobies. Our results show seasonally differentiated habitat niches, where suitable round goby habitat in summer months is restricted to shallow depths (<18.4 m) with a mixture of vegetative and mussel cover. We found high round goby biomass of 122 kg/ha in occupied habitats during the summer, with a total lake-wide biomass of 766,000 kg. In winter, round gobies migrate to deep offshore habitats and disperse, dramatically altering their scope for biological interactions with resident aquatic species across summer and winter seasons. The results of this study indicate that the scope of biological interactions in inland lakes may be seasonally variable, with potential for high round goby biomass in shallow lakes or at the periphery of deep lakes in the summer months. Such shallow-water habitats may therefore present higher risk of ecological impacts from round gobies in invaded lentic ecosystems. As round gobies expand inland, consideration of seasonal habitat use will be an important factor in predicting the impacts of this pervasive invader.

New York↗

USGS2004

Snakeheads ( Pisces, Channidae ): A biological synopsis and risk assessment

Snakeheads (family Channidae) are airbreathing freshwater fishes containing two genera, Channa with 26 species native to Asia, Malaysia, and Indonesia; and Parachanna with 3 species native to tropical Africa. Some snakeheads are small, reaching about 17 centimeters, but most are much larger, the largest reported to be 1.8 meters in length. All are considered thrust predators with most being piscivorous as adults. A few of the smaller snakeheads and colorful juveniles of some larger ones have been available to hobbyists through the aquarium fish trade. Several species are highly valued as food fishes within parts of their native ranges, especially in Asia where they are an important part of capture fisheries and aquaculture. Because of these uses by humans, introductions far beyond native ranges have occurred. One Asian snakehead has been established in Oahu, Hawaii, since before 1900. Another species was discovered established in southeastern Florida in 2000, and a third in a pond in Maryland in 2002. Others have been captured from natural waters of the United States without evidence of reproduction and likely represent released aquarium fishes. That snakeheads at or near sexual maturity were being sold alive in ethnic food markets raised fears that they could be introduced into novel waters. These concerns led to this study on the biology of snakeheads. A risk assessment is included that examines environmental and related aspects of snakehead introductions.

Circular↗

USGS2018

Model structure of the stream salmonid simulator (S3)—A dynamic model for simulating growth, movement, and survival of juvenile salmonids

Fisheries and water managers often use population models to aid in understanding the effect of alternative water management or restoration actions on anadromous fish populations. We developed the Stream Salmonid Simulator (S3) to help resource managers evaluate the effect of management alternatives on juvenile salmonid populations. S3 is a deterministic stage-structured population model that tracks daily growth, movement, and survival of juvenile salmon. A key theme of the model is that river flow affects habitat availability and capacity, which in turn drives density dependent population dynamics. To explicitly link population dynamics to habitat quality and quantity, the river environment is constructed as a one-dimensional series of linked habitat units, each of which has an associated daily time series of discharge, water temperature, and usable habitat area or carrying capacity. The physical characteristics of each habitat unit and the number of fish occupying each unit, in turn, drive survival and growth within each habitat unit and movement of fish among habitat units. The purpose of this report is to outline the underlying general structure of the S3 model that is common among different applications of the model. We have developed applications of the S3 model for juvenile fall Chinook salmon ( Oncorhynchus tshawytscha ) in the lower Klamath River. Thus, this report is a companion to current application of the S3 model to the Trinity River (in review). The general S3 model structure provides a biological and physical framework for the salmonid freshwater life cycle. This framework captures important demographics of juvenile salmonids aimed at translating management alternatives into simulated population responses. Although the S3 model is built on this common framework, the model has been constructed to allow much flexibility in application of the model to specific river systems. The ability for practitioners to include system-specific information for the physical stream structure, survival, growth, and movement processes ensures that simulations provide results that are relevant to the questions asked about the population under study.

Open-File Report↗