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Unlearning Racism in Geoscience (URGE): Summary of U.S. Geological Survey URGE pod deliverables

The U.S. Geological Survey (USGS) is in a unique position to be a leader in diversity, equity, inclusion, and accessibility in the Earth sciences. As one of the largest geoscience employers, the USGS wields significant community influence and has a responsibility to adopt and implement robust, unbiased policies so that the science it is charged to deliver is better connected to the diverse communities it serves. Meaningful and effective improvements in implementation of diversity, equity, inclusion, and accessibility principles made within the USGS will be seen across the geoscience community. Despite this opportunity, however, the community, including the USGS, has struggled to diversify the geoscience workforce, which does not reflect the Nation’s diversity. This disparity suggests that the implementation of past policies did not achieve their desired outcomes in sustainable ways. The persistent lack of diversity across the geosciences and the racial justice protests of 2020 motivated a group of geoscience scholars to launch a global, virtual initiative known as Unlearning Racism in Geoscience (URGE) in the winter of 2021. The 16-week facilitated URGE curriculum was designed to highlight existing literature, share expert opinions, and foster discussion within groups (pods) around the world to build action plans for affecting change within their home institutions ( https://urgeoscience.org/ ). Whereas most of the approximately 4,500 participants were university faculty and students or from professional societies and nonprofit organizations, 6 pods totaling over 120 participants from the USGS joined the program—the largest participation of any Federal science agency. Summarizing the recommendations of over 100 USGS employees across the USGS who participated in URGE, this Circular represents a grassroots plan for making the USGS workforce more diverse and inclusive. To identify how peer-reviewed best practices could be implemented at the USGS, participants read existing literature, reviewed USGS policies and procedures, explored new and existing demographic data, and listened to and discussed primary interviews with scholars, all facilitated by the URGE program. This Circular leverages the efforts and momentum of the USGS URGE participants to catalyze and support positive, systemic change throughout the organization in a holistic way that represents an achievable departure from past policies that fell short of success. These recommendations are starting points. Reflecting the overall lack of diversity in the USGS workforce, the USGS URGE participants were predominantly White, meaning recommendations in this document can and should continue to evolve to include the lived perspectives and input from the broader USGS community. Finally, this summary document only highlights some of the key findings of these working groups. Additional details that may be more suitable to specific USGS Centers and programs can be found in the primary documents developed by each USGS URGE pod; a list of all registered pods can be found at https://urgeoscience.org/pods/ .

Circular↗

Toward fisheries sustainability in North America: Issues, challenges, and strategies for action

Many fisheries in North America are severely depleted and trending downwards. In an effort to find ways of reversing this disturbing situation, the American Fisheries Society and the Sustainable Fisheries Foundation invited leading experts in fisheries science and aquatic resource management to share their thoughts and insights in this book. These experts were asked to identify the factors that are currently impairing our ability to effectively manage fisheries resources and propose creative solutions for addressing the most challenging issues affecting fisheries sustainability. Based on the information that was provided by the experts (i.e., as presented in the earlier chapters of this book), it is apparent that a wide range of human activities are adversely affecting our shared fisheries resources and the aquatic habitats upon which they depend. The most challenging problems stem from causes that are largely beyond the scope of traditional fisheries management (e.g., human population growth, resource consumption patterns, global climate change, broad land-use patterns). It is also apparent that resolution of these challenges will require a new approach to fisheries management - one that effectively integrates economic, social, and environmental interests into a decision-making framework that supports fisheries sustainability. The key strategies for supporting such a transition toward a more holistic and comprehensive approach to managing the human activities that influence fisheries and aquatic resources are summarized in this chapter. ?? 2004 by the American Fisheries Society.

American Fisheries Society Symposium↗

Using urban forest assessment tools to model bird habitat potential

The alteration of forest cover and the replacement of native vegetation with buildings, roads, exotic vegetation, and other urban features pose one of the greatest threats to global biodiversity. As more land becomes slated for urban development, identifying effective urban forest wildlife management tools becomes paramount to ensure the urban forest provides habitat to sustain bird and other wildlife populations. The primary goal of this study was to integrate wildlife suitability indices to an existing national urban forest assessment tool, i-Tree. We quantified available habitat characteristics of urban forests for ten northeastern U.S. cities, and summarized bird habitat relationships from the literature in terms of variables that were represented in the i-Tree datasets. With these data, we generated habitat suitability equations for nine bird species representing a range of life history traits and conservation status that predicts the habitat suitability based on i-Tree data. We applied these equations to the urban forest datasets to calculate the overall habitat suitability for each city and the habitat suitability for different types of land-use (e.g., residential, commercial, parkland) for each bird species. The proposed habitat models will help guide wildlife managers, urban planners, and landscape designers who require specific information such as desirable habitat conditions within an urban management project to help improve the suitability of urban forests for birds.

Landscape and Urban Planning↗

Temperature and winter duration requirements for reproductive success in johnny darter Etheostoma nigrum in the South Platte River basin, Colorado

Changes in water temperature and its seasonal timing influences the physiological processes of many aquatic ectotherms. Wastewater treatment plants (WWTP) contribute to warmer and more consistent water temperatures in streams draining the North American Great Plains, particularly during winter months. Reduced variation in seasonal water temperature may adversely affect fishes that rely on temperature fluctuation or specific overwintering temperatures for reproductive cues. We used johnny darter Etheostoma nigrum (Family Percidae), a thermally sensitive species native to the South Platte River Basin, as a focal species to assess the effects of winter water temperature regulations in Colorado. Our objective was to evaluate the effects of winter stream temperature and winter duration on reproductive success of johnny darter in the laboratory to inform development of water quality criteria for the South Platte River Basin. Winter duration (60, 90 or 120 days) and temperature (4 or 12°C) were crossed in a factorial design of six treatments that simulated warmed effluent-impacted streams as well as streams with a more natural thermal regime. We defined reproductive success in johnny darter by examining four reproductive endpoints: (1) spawning timing, (2) egg and larvae production, (3) egg success, and (4) egg development. Across the four endpoints, seven main response variables were measured: spawning initiation date, eggs per gram of female per week, live larvae per gram of female per week, fertilisation success, hatching success, egg-to-larva survival and days to hatch. Winter temperature and duration influenced spawning timing and egg development. Earlier spawning initiation dates were observed in fish exposed to 12°C winters and was associated with a higher number of days to hatch. Eggs per gram of female per week, live larvae per gram of female per week, fertilisation success, hatching success, and egg-to-larva survival were similar among winter treatments. Although the State of Colorado chronic winter water temperature standard of 12°C appears to be adequate for egg and larvae production in johnny darter, our results showed that fish exposed to the standard began spawning significantly earlier than fish exposed to 4°C winters. Evaluating reproductive output in the context of seasonal timing is valid because spawning timing has the potential to affect overall production and egg development, and consequently recruitment and population sustainability. Therefore, spawning timing should be considered when making management decisions and revising water temperature standards. The warming of streams and rivers from WWTP effluent is a global issue, especially in areas that are undergoing rapid urbanisation. Fishes are particularly sensitive to water temperature and many fishes worldwide are likely to be experiencing changes in important physiological processes, affecting both reproduction and survival. Our study indicates that reproductive timing could be influenced by stream warming and stresses the need for further studies on the influence of anthropogenic effects on stream warming.

Colorado↗

Farmer-managed restoration of agroforestry parklands in Niger

Land rehabilitation enables sustainable intensification of agriculture and more resilient food production systems. Despite severe development challenges, Niger is the site of successful, farmer-managed efforts to counteract the global trend in land degradation that was supported by policy change. The vast majority of Niger’s land is located in the Sahara. Following a series of severe droughts during the 1970s, it seemed as if the harmattan would blow drought-stricken Niger from the map. In 1993, an enabling policy change in government regulations transferred the ownership of trees from the state to farmers. Even before the policy was enacted, farmers had begun restoring agroforestry parklands on the heavily populated, agricultural plains of south-central Niger. By 2005, the sparse tree cover of the 1970s was replaced by young and fastgrowing parklands, with a high density of trees, often in the inner fields around a village. Village sizes continued to swell, with fallow continuing to disappear. Yet, comparing 2005 to 2013, high resolution imagery in 2013 showed almost no change in most sample plots, increasing tree density on nearly a quarter of them, and decreasing density in less than 2%. In 2017, an estimated 7 million ha are affected by the process of farmer-managed natural regeneration (FMNR) – a scale and longevity that attests to the economic viability of the approach.

Book chapter↗

Drivers of waterfowl population dynamics: from teal to swans

Waterfowl are among the best studied and most extensively monitored species in the world. Given their global importance for sport and subsistence hunting, viewing and ecosystem functioning, great effort has been devoted since the middle part of the 20th century to understanding both the environmental and demographic mechanisms that influence waterfowl population and community dynamics. Here we use comparative approaches to summarise and contrast our understanding of waterfowl population dynamics across species as short-lived as the teal Anas discors and A.crecca to those such as the swans Cygnus sp. which have long life-spans. Specifically, we focus on population responses to vital rate perturbations across life history strategies, discuss bottom-up and top-down responses of waterfowl populations to global change, and summarise our current understanding of density dependence across waterfowl species. We close by identifying research needs and highlight ways to overcome the challenges of sustainably managing waterfowl populations in the 21st century.

Wildfowl↗

Chronic wasting disease drives population decline of white-tailed deer

Chronic wasting disease (CWD) is an invariably fatal transmissible spongiform encephalopathy of white-tailed deer, mule deer, elk, and moose. Despite a 100% fatality rate, areas of high prevalence, and increasingly expanding geographic endemic areas, little is known about the population-level effects of CWD in deer. To investigate these effects, we tested the null hypothesis that high prevalence CWD did not negatively impact white-tailed deer population sustainability. The specific objectives of the study were to monitor CWD-positive and CWD-negative white-tailed deer in a high-prevalence CWD area longitudinally via radio-telemetry and global positioning system (GPS) collars. For the two populations, we determined the following: a) demographic and disease indices, b) annual survival, and c) finite rate of population growth ( λ ). The CWD prevalence was higher in females (42%) than males (28.8%) and hunter harvest and clinical CWD were the most frequent causes of mortality, with CWD-positive deer over-represented in harvest and total mortalities. Survival was significantly lower for CWD-positive deer and separately by sex; CWD-positive deer were 4.5 times more likely to die annually than CWD-negative deer while bucks were 1.7 times more likely to die than does. Population λ was 0.896 (0.859–0.980), which indicated a 10.4% annual decline. We show that a chronic disease that becomes endemic in wildlife populations has the potential to be population-limiting and the strong population-level effects of CWD suggest affected populations are not sustainable at high disease prevalence under current harvest levels.

PLoS ONE↗

Global synthesis of groundwater recharge in semiarid and arid regions

Global synthesis of the findings from ∼140 recharge study areas in semiarid and arid regions provides important information on recharge rates, controls, and processes, which are critical for sustainable water development. Water resource evaluation, dryland salinity assessment (Australia), and radioactive waste disposal (US) are among the primary goals of many of these recharge studies. The chloride mass balance (CMB) technique is widely used to estimate recharge. Average recharge rates estimated over large areas (40–374 000 km 2 ) range from 0·2 to 35 mm year −1 , representing 0·1–5% of long-term average annual precipitation. Extreme local variability in recharge, with rates up to ∼720 m year −1 , results from focussed recharge beneath ephemeral streams and lakes and preferential flow mostly in fractured systems. System response to climate variability and land use/land cover (LU/LC) changes is archived in unsaturated zone tracer profiles and in groundwater level fluctuations. Inter-annual climate variability related to El Niño Southern Oscillation (ENSO) results in up to three times higher recharge in regions within the SW US during periods of frequent El Niños (1977–1998) relative to periods dominated by La Niñas (1941–1957). Enhanced recharge related to ENSO is also documented in Argentina. Climate variability at decadal to century scales recorded in chloride profiles in Africa results in recharge rates of 30 mm year −1 during the Sahel drought (1970–1986) to 150 mm year −1 during non-drought periods. Variations in climate at millennial scales in the SW US changed systems from recharge during the Pleistocene glacial period (≥10 000 years ago) to discharge during the Holocene semiarid period. LU/LC changes such as deforestation in Australia increased recharge up to about 2 orders of magnitude. Changes from natural grassland and shrublands to dryland (rain-fed) agriculture altered systems from discharge (evapotranspiration, ET) to recharge in the SW US. The impact of LU change was much greater than climate variability in Niger (Africa), where replacement of savanna by crops increased recharge by about an order of magnitude even during severe droughts. Sensitivity of recharge to LU/LC changes suggests that recharge may be controlled through management of LU. In irrigated areas, recharge varies from 10 to 485 mm year −1 , representing 1–25% of irrigation plus precipitation. However, irrigation pumpage in groundwater-fed irrigated areas greatly exceeds recharge rates, resulting in groundwater mining. Increased recharge related to cultivation has mobilized salts that accumulated in the unsaturated zone over millennia, resulting in widespread groundwater and surface water contamination, particularly in Australia. The synthesis of recharge rates provided in this study contains valuable information for developing sustainable groundwater resource programmes within the context of climate variability and LU/LC change.

Hydrological Processes↗

Challenges in evaluating the impact of the trade in amphibians and reptiles on wild populations

Amphibians and reptiles are taken from the wild and sold commercially as food, pets, and traditional medicines. The overcollecting of some species highlights the need to assess the trade and ensure that it is not contributing to declines in wild populations. Unlike most countries, the United States tracks the imports and exports of all amphibians and reptiles. Records from 1998 to 2002 reveal a US trade of several million wild-caught amphibians and reptiles each year, although many shipments are not recorded at the species level. The magnitude and content of the global commercial trade carries even greater unknowns. The absence of accurate trade and biological information for most species makes it difficult to establish whether current take levels are sustainable. The void of information also implies that population declines due to overcollecting could be going undetected. Policy changes to acquire baseline biological information and ensure a sustainable trade are urgently needed.

BioScience↗

Understanding protected area resilience: a multi-scale, social-ecological approach

Protected areas (PAs) remain central to the conservation of biodiversity. Classical PAs were conceived as areas that would be set aside to maintain a natural state with minimal human influence. However, global environmental change and growing cross-scale anthropogenic influences mean that PAs can no longer be thought of as ecological islands that function independently of the broader social-ecological system in which they are located. For PAs to be resilient (and to contribute to broader social-ecological resilience), they must be able to adapt to changing social and ecological conditions over time in a way that supports the long-term persistence of populations, communities, and ecosystems of conservation concern. We extend Ostrom's social-ecological systems framework to consider the long-term persistence of PAs, as a form of land use embedded in social-ecological systems, with important cross-scale feedbacks. Most notably, we highlight the cross-scale influences and feedbacks on PAs that exist from the local to the global scale, contextualizing PAs within multi-scale social-ecological functional landscapes. Such functional landscapes are integral to understand and manage individual PAs for long-term sustainability. We illustrate our conceptual contribution with three case studies that highlight cross-scale feedbacks and social-ecological interactions in the functioning of PAs and in relation to regional resilience. Our analysis suggests that while ecological, economic, and social processes are often directly relevant to PAs at finer scales, at broader scales, the dominant processes that shape and alter PA resilience are primarily social and economic.

Ecological Applications↗

Future dryness in the Southwest US and the hydrology of the early 21st century drought

Recently the Southwest has experienced a spate of dryness, which presents a challenge to the sustainability of current water use by human and natural systems in the region. In the Colorado River Basin, the early 21st century drought has been the most extreme in over a century of Colorado River flows, and might occur in any given century with probability of only 60%. However, hydrological model runs from downscaled Intergovernmental Panel on Climate Change Fourth Assessment climate change simulations suggest that the region is likely to become drier and experience more severe droughts than this. In the latter half of the 21st century the models produced considerably greater drought activity, particularly in the Colorado River Basin, as judged from soil moisture anomalies and other hydrological measures. As in the historical record, most of the simulated extreme droughts build up and persist over many years. Durations of depleted soil moisture over the historical record ranged from 4 to 10 years, but in the 21st century simulations, some of the dry events persisted for 12 years or more. Summers during the observed early 21st century drought were remarkably warm, a feature also evident in many simulated droughts of the 21st century. These severe future droughts are aggravated by enhanced, globally warmed temperatures that reduce spring snowpack and late spring and summer soil moisture. As the climate continues to warm and soil moisture deficits accumulate beyond historical levels, the model simulations suggest that sustaining water supplies in parts of the Southwest will be a challenge.

Proceedings of the National Academy of Sciences of↗

Alternating wet and dry depositional environments recorded in the stratigraphy of Mt Sharp at Gale Crater, Mars

The Curiosity rover is exploring Hesperian-aged stratigraphy in Gale crater, Mars, where a transition from clay-bearing units to a layered sulfate-bearing unit has been interpreted to represent a major environmental transition of unknown character. We present the first description of key facies in the sulfate-bearing unit, recently observed in the distance by the rover, and propose a model for changes in depositional environments. Our results indicate a transition from lacustrine mudstones into thick aeolian deposits, topped by a major deflation surface, above which strata show architectures likely diagnostic of a subaqueous environment. This model offers a reference example of a depositional sequence for layered sulfate-bearing strata, which have been identified from orbit in other locations globally. It differs from the idea of a monotonic Hesperian climate change into long-term aridity on Mars and instead implies a period characterized by multiple transitions between sustained drier and wetter climates.

Geology↗

Effects of Climate Variability and Change on Groundwater Resources of the United States

Groundwater is an important part of the global fresh water supply and is affected by climate. U.S. Geological Survey (USGS) scientists are working with local, State, Federal, and international partners to understand how the availability and sustainability of groundwater resources in the United States will be affected by climate variability and change. This fact sheet describes climate variability and change, important groundwater resources of the Nation, and how USGS research is helping to answer critical questions about the effects of climate on groundwater.

Fact Sheet↗

Coastal impacts, adaptation, and vulnerabilities: a technical input to the 2013 National Climate Assessment

The coast has long provided communities with a multitude of benefits including an abundance of natural resources that sustain economies, societies, and ecosystems. Coasts provide natural harbors for commerce, trade, and transportation; beaches and shorelines that attract residents and tourists; and wetlands and estuaries that are critical for fisheries and water resources. Coastal ecosystems provide critical functions to cycle and move nutrients, store carbon, detoxify wastes, and purify air and water. These areas also mitigate floods and buffer against coastal storms that bring high winds and salt water inland and erode the shore. Coastal regions are critical in the development, transportation, and processing of oil and natural gas resources and, more recently, are being explored as a source of energy captured from wind and waves. The many benefits and opportunities provided in coastal areas have strengthened our economic reliance on coastal resources. Consequently, the high demands placed on the coastal environment will increase commensurately with human activity. Because 35 U.S. states, commonwealths, and territories have coastlines that border the oceans or Great Lakes, impacts to coastline systems will reverberate through social, economic, and natural systems across the U.S. Impacts on coastal systems are among the most costly and most certain consequences of a warming climate (Nicholls et al., 2007). The warming atmosphere is expected to accelerate sea-level rise as a result of the decline of glaciers and ice sheets and the thermal expansion of sea water. As mean sea level rises, coastal shorelines will retreat and low-lying areas will tend to be inundated more frequently, if not permanently, by the advancing sea. As atmospheric temperature increases and rainfall patterns change, soil moisture and runoff to the coast are likely to be altered. An increase in the intensity of climatic extremes such as storms and heat spells, coupled with other impacts of climate change and the effects of human development, could affect the sustainability of many existing coastal communities and natural resources. This report, one of a series of technical inputs for the third NCA conducted under the auspices of the U.S. Global Change Research Program, examines the known effects and relationships of climate change variables on the coasts of the U.S. It describes the impacts on natural and human systems, including several major sectors of the U.S. economy, and the progress and challenges to planning and implementing adaptation options. Below we present the key findings from each chapter of the report, beginning with the following key findings from Chapter 1: Introduction and Context.

Book↗

Dynamic simulation and numerical analysis of hurricane storm surge under sea level rise with geomorphologic changes along the northern Gulf of Mexico

This work outlines a dynamic modeling framework to examine the effects of global climate change, and sea level rise (SLR) in particular, on tropical cyclone-driven storm surge inundation. The methodology, applied across the northern Gulf of Mexico, adapts a present day large-domain, high resolution, tide, wind-wave, and hurricane storm surge model to characterize the potential outlook of the coastal landscape under four SLR scenarios for the year 2100. The modifications include shoreline and barrier island morphology, marsh migration, and land use land cover change. Hydrodynamics of 10 historic hurricanes were simulated through each of the five model configurations (present day and four SLR scenarios). Under SLR, the total inundated land area increased by 87% and developed and agricultural lands by 138% and 189%, respectively. Peak surge increased by as much as 1 m above the applied SLR in some areas, and other regions were subject to a reduction in peak surge, with respect to the applied SLR, indicating a nonlinear response. Analysis of time-series water surface elevation suggests the interaction between SLR and storm surge is nonlinear in time; SLR increased the time of inundation and caused an earlier arrival of the peak surge, which cannot be addressed using a static (“bathtub”) modeling framework. This work supports the paradigm shift to using a dynamic modeling framework to examine the effects of global climate change on coastal inundation. The outcomes have broad implications and ultimately support a better holistic understanding of the coastal system and aid restoration and long-term coastal sustainability.

Earth's Future↗

Insular ecosystems of the southeastern United States—A regional synthesis to support biodiversity conservation in a changing climate

In the southeastern United States, insular ecosystems—such as rock outcrops, depression wetlands, high-elevation balds, flood-scoured riparian corridors, and insular prairies and barrens—occupy a small fraction of land area but constitute an important source of regional and global biodiversity, including concentrations of rare and endemic plant taxa. Maintenance of this biodiversity depends upon regimes of abiotic stress and disturbance, incorporating factors such as soil surface temperature, widely fluctuating hydrologic conditions, fires, flood scouring, and episodic droughts that may be subject to alteration by climate change. Over several decades, numerous localized, site-level investigations have yielded important information about the floristics, physical environments, and ecological dynamics of these insular ecosystems; however, the literature from these investigations has generally remained fragmented. This report consists of literature syntheses for eight categories of insular ecosystems of the southeastern United States, concerning (1) physical geography, (2) ecological determinants of community structures including vegetation dynamics and regimes of abiotic stress and disturbance, (3) contributions to regional and global biodiversity, (4) historical and current anthropogenic threats and conservation approaches, and (5) key knowledge gaps relevant to conservation, particularly in terms of climate-change effects on biodiversity. This regional synthesis was undertaken to discern patterns across ecosystems, identify knowledge gaps, and lay the groundwork for future analyses of climate-change vulnerability. Findings from this synthesis indicate that, despite their importance to regional and global biodiversity, insular ecosystems of the southeastern United States have been subjected to a variety of direct and indirect human alterations. In many cases, important questions remain concerning key determinants of ecosystem function. In particular, few empirical investigations in these ecosystems have focused on possible climate-change effects, despite the well-documented ecological effects of climate change at a global level. Long-term management of these ecosystems could benefit from increased scientific effort to characterize and quantify the linkages between changing environmental conditions and the ecological processes that sustain biodiversity.

Alabama, Arkansas, Florida, Georgia, Kentucky, Lou↗

Potential 2050 distributions of World Terrestrial Ecosystems from projections of changes in World Climate Regions and Global Land Cover

The urgency to address ecosystem loss is paramount, as both land use change and climate change will continue to rapidly alter and degrade natural ecosystems and reduce the many services they provide. To support conservation actions that mitigate impacts from these dual threats, we have developed potential World Terrestrial Ecosystem (WTE) distributions for 2050 following IPCC best practice guidelines. This projection of ecosystem distributions builds on the previously released 2015 WTEs, a snapshot of the distribution and conservation status of 431 terrestrial ecosystem types defined as distinct combinations of 18 global climate regions, 4 global landform classes, and 8 global vegetation/land cover classes. Extending that work herein, we modeled the potential 2050 WTE distributions based on projections of five CMIP6 general circulation models (GCMs) and one global land cover change model, determined for three shared socioeconomic pathway (SSP) scenarios. The climate region modeling included projections for 2050 for both mean annual temperature and mean annual aridity. Model agreement for changes to WTEs was generally high, particularly for temperature projections. Widespread changes in ecosystem classes due to shifts in climate settings and/or land cover between 2015 and 2050 were projected, with both the magnitude and specific geography of projected change largely governed by the SSP scenario. For the three SSP scenarios (sustainable development, regional rivalry, and fossil-fueled development), geographic changes in climate setting (temperature, aridity, or both) and/or changes in vegetation/land cover are projected for 29 %, 36 %, and 39 % of Earth’s terrestrial surface, respectively. These changes occur in areas where 31 %, 36 %, and 41 % of the global population lives. Projected changes in ecosystem distributions related to temperature change are approximately an order of magnitude greater than for aridity change. By offering insight into potential ecosystem changes, this new resource is intended to facilitate conservation planning and priority setting aimed at improved conservation of biodiversity and ecosystem services.

Global Ecology and Conservation↗

A global perspective on bacterial diversity in the terrestrial deep subsurface

While recent efforts to catalogue Earth’s microbial diversity have focused upon surface and marine habitats, 12–20 % of Earth’s biomass is suggested to exist in the terrestrial deep subsurface, compared to ~1.8 % in the deep subseafloor. Metagenomic studies of the terrestrial deep subsurface have yielded a trove of divergent and functionally important microbiomes from a range of localities. However, a wider perspective of microbial diversity and its relationship to environmental conditions within the terrestrial deep subsurface is still required. Our meta-analysis reveals that terrestrial deep subsurface microbiota are dominated by Betaproteobacteria, Gammaproteobacteria and Firmicutes , probably as a function of the diverse metabolic strategies of these taxa. Evidence was also found for a common small consortium of prevalent Betaproteobacteria and Gammaproteobacteria operational taxonomic units across the localities. This implies a core terrestrial deep subsurface community, irrespective of aquifer lithology, depth and other variables, that may play an important role in colonizing and sustaining microbial habitats in the deep terrestrial subsurface. An in silico contamination-aware approach to analysing this dataset underscores the importance of downstream methods for assuring that robust conclusions can be reached from deep subsurface-derived sequencing data. Understanding the global panorama of microbial diversity and ecological dynamics in the deep terrestrial subsurface provides a first step towards understanding the role of microbes in global subsurface element and nutrient cycling.

Microbiology↗