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At least 199 records · Page 11Linked to original sources

USGS2017

A shifting rift—Geophysical insights into the evolution of Rio Grande rift margins and the Embudo transfer zone near Taos, New Mexico

We present a detailed example of how a subbasin develops adjacent to a transfer zone in the Rio Grande rift. The Embudo transfer zone in the Rio Grande rift is considered one of the classic examples and has been used as the inspiration for several theoretical models. Despite this attention, the history of its development into a major rift structure is poorly known along its northern extent near Taos, New Mexico. Geologic evidence for all but its young rift history is concealed under Quaternary cover. We focus on understanding the pre-Quaternary evidence that is in the subsurface by integrating diverse pieces of geologic and geophysical information. As a result, we present a substantively new understanding of the tectonic configuration and evolution of the northern extent of the Embudo fault and its adjacent subbasin. We integrate geophysical, borehole, and geologic information to interpret the subsurface configuration of the rift margins formed by the Embudo and Sangre de Cristo faults and the geometry of the subbasin within the Taos embayment. Key features interpreted include (1) an imperfect D-shaped subbasin that slopes to the east and southeast, with the deepest point ∼2 km below the valley floor located northwest of Taos at ∼36° 26′N latitude and 105° 37′W longitude; (2) a concealed Embudo fault system that extends as much as 7 km wider than is mapped at the surface, wherein fault strands disrupt or truncate flows of Pliocene Servilleta Basalt and step down into the subbasin with a minimum of 1.8 km of vertical displacement; and (3) a similar, wider than expected (5–7 km) zone of stepped, west-down normal faults associated with the Sangre de Cristo range front fault. From the geophysical interpretations and subsurface models, we infer relations between faulting and flows of Pliocene Servilleta Basalt and older, buried basaltic rocks that, combined with geologic mapping, suggest a revised rift history involving shifts in the locus of fault activity as the Taos subbasin developed. We speculate that faults related to north-striking grabens at the end of Laramide time formed the first west-down master faults. The Embudo fault may have initiated in early Miocene southwest of the Taos region. Normal-oblique slip on these early fault strands likely transitioned in space and time to dominantly left-lateral slip as the Embudo fault propagated to the northeast. During and shortly after eruption of Servilleta Basalt, proto-Embudo fault strands were active along and parallel to the modern, NE-aligned Rio Pueblo de Taos, ∼4–7 km basinward of the modern, mapped Embudo fault zone. Faults along the northeastern subbasin margin had northwest strikes for most of the period of subbasin formation and were located ∼5–7 km basinward of the modern Sangre de Cristo fault. The locus of fault activity shifted to more northerly striking faults within 2 km of the modern range front sometime after Servilleta volcanism had ceased. The northerly faults may have linked with the northeasterly proto-Embudo faults at this time, concurrent with the development of N-striking Los Cordovas normal faults within the interior of the subbasin. By middle Pleistocene(?) time, the Los Cordovas faults had become inactive, and the linked Embudo–Sangre de Cristo fault system migrated to the south, to the modern range front.

New Mexico↗

USGS2023

Future marsh evolution due to tidal changes induced by human adaptation to sea level rise

With sea level rise threatening coastal development, decision-makers are beginning to act by modifying shorelines. Previous research has shown that hardening or softening shorelines may change the tidal range under future sea level rise. Tidal range can also be changed by natural factors. Coastal marshes, which humans increasingly depend on for shoreline protection, are ecologically sensitive to tidal range. Therefore, it is critical to examine how changes in tidal range could influence marsh processes. A marsh accretion model was used to investigate the ecological response of a San Francisco Bay, California, USA marsh to multiple tidal range scenarios and sea level rise from 2010 to 2100. The scenarios include a baseline scenario with no shoreline modifications in the estuary, a shoreline hardening scenario that amplifies the tidal range, and 14 tidal range scenarios as a sensitivity analysis that span tidal amplification and reduction of the baseline scenario. The modeling results expose key tradeoffs to consider when planning for sea level rise. Compared to the baseline, the hardening scenario shows minor differences. However, further tidal amplification prolongs marsh survival but decreases Sarcocornia pacifica cover, an important species for certain threatened wildlife and an effective attenuator of wave energy. Conversely, tidal reduction precipitates marsh drowning but shows gains in Sarcocornia pacifica cover. These mixed impacts of tidal amplification and reduction shown by the model indicate potential tradeoffs in relation to marsh survival, habitat characteristics, and shoreline protection. This study suggests the need for a cross-sectoral, regional approach to sea level rise adaptation.

California↗

USGS1996

Developing a temporal database of urban development for the Baltimore/Washington region

The U.S. Geological Survey (USGS), the University of Maryland Baltimore County (UMBC), and the U.S. Bureau of the Census are working together as a multiagency, multidisciplinary team in developing a temporal database that documents the growth of the Baltimore-Washington metropolitan region. This database consists of urban development, principal transportation, shoreline, and population density change. The urban development theme, considered a primary data layer in the study of urban land transformation resulting from human impact on the land, is the focus of this paper. The Baltimore-Washington Spatial Dynamics and Human Impacts Study builds on earlier research efforts that mapped urban land use change for the San Francisco Bay area (Acevedo and Bell, 1994; Bell and others, 1995; Kirtland and others, 1994). In developing a temporal database (Acevedo and others, in press), the team participants hope to provide data that can be used to study patterns of urban growth; assess ecological, environmental, and climatic impacts of urban change; and model and predict future urbanization patterns and impacts (Clarke and others, 1996). Both the San Francisco and Baltimore-Washington regions were selected because of the rapid urban growth and resulting impacts on their ecosystems. The Chesapeake Bay region in particular has undergone extensive environmental agitation due to the hydrologic problems that have arisen from the increase in impermeable surfaces and structures, that is buildings and pavement that physically cover the soil. Because of the inability of water to percolate into the ground, little purification occurs by filtration. Water runs over paved surfaces and quickly washes high levels of toxins directly into the water system. Toxins like gasoline, oil, and fertilizer have dramatically affected the local streams, rivers, and the bay. ABSTRACT The U.S. Geological Survey, the University of Maryland Baltimore County, and the U.S. Bureau of the Census are developing a temporal database to study urban development in the Baltimore-Washington region. The primary data layer, the extent of urban or built-up areas, was compiled using a geographic information system and historical maps, remotely sensed data, digital land use data, and census information from a variety of sources. Urban land use change has been documented by the Baltimore-Washington Spatial Dynamics & Human Impact Study Team for the last 200 years. The methods, definitions, and collection criteria used to define urban or built-up areas were developed by a multi-disciplinary team that also ensures consistency in collection techniques and documentation methods for subsequent application in other regions. Animation techniques were used to visualize the database and to document the evolution of the region's urban landscape. The database is an important tool to urban and regional planners, ecologists, and global change researchers for measuring trends in urban sprawl, analyzing patterns of water pollution, understanding the impacts of development on ecosystems, and developing predictive modeling techniques to better forecast areas of urban growth. This paper describes the techniques used to map the extent of urban areas for Phase I and does not discuss Phase II in detail because the work is still in progress. In this study, urban development is defined as areas of intensive use, with much of the land covered by structures. The built-up areas are characterized by the existence of a systematic street pattern, and the relative concentration of buildings and associated intensive use areas, such as parking lots. Using this definition, urban development does not refer to political boundaries and may include incorporated or unincorporated areas as well as military reservations. ABSTRACT The U.S. Geological Survey, the University of Maryland Baltimore County, and the U.S. Bureau of the Census are developing a temporal database to study urban development in the Baltimore-Washington region. The primary data layer, the extent of urban or built-up areas, was compiled using a geographic information system and historical maps, remotely sensed data, digital land use data, and census information from a variety of sources. Urban land use change has been documented by the Baltimore-Washington Spatial Dynamics & Human Impact Study Team for the last 200 years. The methods, definitions, and collection criteria used to define urban or built-up areas were developed by a multi-disciplinary team that also ensures consistency in collection techniques and documentation methods for subsequent application in other regions. Animation techniques were used to visualize the database and to document the evolution of the region's urban landscape. The database is an important tool to urban and regional planners, ecologists, and global change researchers for measuring trends in urban sprawl, analyzing patterns of water pollution, understanding the impacts of development on ecosystems, and developing predictive modeling techniques to better forecast areas of urban growth. To build the urban component of the temporal database, a multidisciplinary team was assembled and a phased approach initiated. Expanding on procedures developed for the San Francisco Regional Study (Bell and others, 1995), the team developed data definitions, a classification scheme, compilation criteria, mapping specifications, guidelines for source materials, and metadata specifications to support development of a logically consistent dataset. Extensive documentation procedures were established to ensure consistency in data collection, and for subsequent application to other regions. Phase II was the implementation of the regional mapping effort. ABSTRACT The U.S. Geological Survey, the University of Maryland Baltimore County, and the U.S. Bureau of the Census are developing a temporal database to study urban development in the Baltimore-Washington region. The primary data layer, the extent of urban or built-up areas, was compiled using a geographic information system and historical maps, remotely sensed data, digital land use data, and census information from a variety of sources. Urban land use change has been documented by the Baltimore-Washington Spatial Dynamics & Human Impact Study Team for the last 200 years. The methods, definitions, and collection criteria used to define urban or built-up areas were developed by a multi-disciplinary team that also ensures consistency in collection techniques and documentation methods for subsequent application in other regions. Animation techniques were used to visualize the database and to document the evolution of the region's urban landscape. The database is an important tool to urban and regional planners, ecologists, and global change researchers for measuring trends in urban sprawl, analyzing patterns of water pollution, understanding the impacts of development on ecosystems, and developing predictive modeling techniques to better forecast areas of urban growth. The study area for Phase I consisted of an approximate area of 15- by 15-minute segment centered around the city of Baltimore (fig. 1). Phase I was used as a prototype for the technique development and integration that the multiagency collaborative effort would require. The regional study, Phase II, encompassed a 2-degree square centered on Washington, D.C. With more than 7 million people spread across 39 counties, the Baltimore-Washington region is one the Nation's fastest growing metropolitan areas. The two cities are rapidly merging into one.

Maryland↗

USGS2008

Development of a three-dimensional, regional, coupled wave, current, and sediment-transport model

We are developing a three-dimensional numerical model that implements algorithms for sediment transport and evolution of bottom morphology in the coastal-circulation model Regional Ocean Modeling System (ROMS v3.0), and provides a two-way link between ROMS and the wave model Simulating Waves in the Nearshore (SWAN) via the Model-Coupling Toolkit. The coupled model is applicable for fluvial, estuarine, shelf, and nearshore (surfzone) environments. Three-dimensional radiation-stress terms have been included in the momentum equations, along with effects of a surface wave roller model. The sediment-transport algorithms are implemented for an unlimited number of user-defined non-cohesive sediment classes. Each class has attributes of grain diameter, density, settling velocity, critical stress threshold for erosion, and erodibility constant. Suspended-sediment transport in the water column is computed with the same advection-diffusion algorithm used for all passive tracers and an additional algorithm for vertical settling that is not limited by the CFL criterion. Erosion and deposition are based on flux formulations. A multi-level bed framework tracks the distribution of every size class in each layer and stores bulk properties including layer thickness, porosity, and mass, allowing computation of bed morphology and stratigraphy. Also tracked are bed-surface properties including active-layer thickness, ripple geometry, and bed roughness. Bedload transport is calculated for mobile sediment classes in the top layer. Bottom-boundary layer submodels parameterize wave-current interactions that enhance bottom stresses and thereby facilitate sediment transport and increase bottom drag, creating a feedback to the circulation. The model is demonstrated in a series of simple test cases and a realistic application in Massachusetts Bay.

Computers & Geosciences↗

USGS2013

A new model for the growth of basaltic shields based on deformation of Fernandina volcano, Galápagos Islands

Space-geodetic measurements of surface deformation produced by the most recent eruptions at Fernandina – the most frequently erupting volcano in the Galápagos Archipelago – reveal that all have initiated with the intrusion of subhorizontal sills from a shallow magma reservoir. This includes eruptions from fissures that are oriented both radially and circumferentially with respect to the summit caldera. A Synthetic Aperture Radar (SAR) image acquired 1–2 h before the start of a radial fissure eruption in 2009 captures one of these sills in the midst of its propagation toward the surface. Galápagos eruptive fissures of all orientations have previously been presumed to be fed by vertical dikes, and this assumption has guided models of the origin of the eruptive fissure geometry and overall development of the volcanoes. Our findings allow us to reinterpret the internal structure and evolution of Galápagos volcanoes and of similar basaltic shields. Furthermore, we note that stress changes generated by the emplacement of subhorizontal sills feeding one type of eruption may control the geometry of subsequent eruptive fissures. Specifically, circumferential fissures tend to open within areas uplifted by sill intrusions that initiated previous radial fissure eruptions. This mechanism provides a possible explanation for the pattern of eruptive fissures that characterizes all the western Galápagos volcanoes, as well as the alternation between radial and circumferential fissure eruptions at Fernandina. The same model suggests that the next eruption of Fernandina will be from a circumferential fissure in the area uplifted by the 2009 sill intrusion, just southwest of the caldera rim.

GalÃ¡pagos Islands↗

USGS2009

Numerical simulation of dune-flat bed transition and stage‐discharge relationship with hysteresis effect

This work presents recent advances on morphodynamic modeling of bed forms under unsteady discharge. This paper includes further development of a morphodynamic model proposed earlier by Giri and Shimizu (2006a). This model reproduces the temporal development of river dunes and accurately replicates the physical properties associated with bed form evolution. Model results appear to provide accurate predictions of bed form geometry and form drag over bed forms for arbitrary steady flows. However, accurate predictions of temporal changes of form drag are key to the prediction of stage‐discharge relation during flood events. Herein, the model capability is extended to replicate the dune–flat bed transition, and in turn, the variation of form drag produced by the temporal growth or decay of bed forms under unsteady flow conditions. Some numerical experiments are performed to analyze hysteresis of the stage‐discharge relationship caused by the transition between dune and flat bed regimes during rising and falling stages of varying flows. The numerical model successfully simulates dune–flat bed transition and the associated hysteresis of the stage‐discharge relationship; this is in good agreement with physical observations but has been treated in the past only using empirical methods. A hypothetical relationship for a sediment parameter (the mean step length) is proposed to a first level of approximation that enables reproduction of the dune–flat bed transition. The proposed numerical model demonstrates its ability to address an important practical problem associated with bed form evolution and flow resistance in varying flows.

Water Resources Research↗

USGS2003

Origin of the Blue Ridge escarpment along the passive margin of Eastern North America

The Blue Ridge escarpment is a rugged landform situated within the ancient Appalachian orogen. While similar in some respects to the great escarpments along other passive margins, which have evolved by erosion following rifting, its youthful topographic expression has inspired proposals of Cenozoic tectonic rejuvenation in eastern North America. To better understand the post-orogenic and post-rift geomorphic evolution of passive margins, we have examined the origin of this landform using low-temperature thermochronometry and manipulation of topographic indices. Apatite (U-Th)/He and fission-track analyses along transects across the escarpment reveal a younging trend towards the coast. This pattern is consistent with other great escarpments and fits with an interpretation of having evolved by prolonged erosion, without the requirement of tectonic rejuvenation. Measured ages are also comparable specifically to those measured along other great escarpments that are as much as 100 Myr younger. This suggests that erosional mechanisms that maintain rugged escarpments in the early post-rift stages may remain active on ancient passive margins for prolonged periods. The precise erosional evolution of the escarpment is less clear, however, and several end-member models can explain the data. Our preferred model, which fits with all data, involves a significant degree of erosional escarpment retreat in the Cenozoic. Although this suggests that early onset of topographic stability is not required of passive margin evolution, more data are required to better constrain the details of the escarpment's development.

Blue Ridge escarpment↗

USGS2023

Barrier islands and spits of northern Alaska: Decadal scale morphological change

Arctic barrier islands and spits are dynamic features influenced by a variety of oceanographic, geologic, and environmental factors. Many serve as habitat and protection for native species and shelter the coast from waves and storms that can flood and erode the adjacent mainland. This paper summarizes results of a study documenting changes to barrier morphology along the North Slope coast of Alaska between the United States-Canadian border and Cape Beaufort, from 1947 to 2020. Changes considered include number of barriers, area and perimeter, shoreline length, barrier sinuosity and width, presence and number of relict terminus features, presence and coverage of tundra vegetation, barrier orientation, termini migration rates, and elevation metrics. Wave conditions are also summarized and related to changes in barrier morphology. The results of this study help to better predict future barrier evolution and prevalence along Alaska’s coast by increasing our understanding of Arctic barrier development, migration, and degradation via the evaluation of historical morphometrics.

Alaska↗

USGS1975

Death feigning by ducks in response to predation by red foxes (Vulpes fulva)

Predation by captive red foxes ( Vulpes fulva ) on approximately 50 ducks comprised of five species was observed in tests conducted at the Northern Prairie Wildlife Research Center, Jamestown, North Dakota. Most ducks were attacked from a rear or lateral position and seized in the cervical or thoracic region. All birds became immobile (death-feigned) immediately when seized and with few exceptions remained motionless during prey-handling and for varying lengths of time thereafter. Initial death feints lasted from 20 sec to 14 min. Recovery was delayed by tactile, visual and, possibly, auditory cues from the foxes. Death-feigning birds appeared alert and often took advantage of escape opportunities. Twenty-nine birds survived initial capture and handling by the foxes. Naive foxes were wary of ducks during initial confrontations, but experienced foxes showed little hesitation in attacking them. After capture, most ducks were taken alive to lay-down sites where they were mouthed and often killed. Then the ducks were usually cached or taken to dens or pups. Several birds were cached alive. Red foxes appear to have adapted to the escape of death-feigning ducks by learning to kill some birds soon after capture and by the evolution of an appendage-severing behavior. Death feigning appears to be a highly developed antipredator behavior of ducks that facilitates the escape of some birds after capture by red foxes.

American Midland Naturalist↗

USGS2021

Assessment of barrier island morphological change in northern Alaska

Arctic barriers islands are highly dynamic features influenced by a variety of oceanographic, geologic, and environmental factors. Many Alaskan barrier islands and spits serve as habitat and protection for native species, as well as shelter the coast from waves and storms that cause flooding and degradation of coastal villages. This study summarizes changes to barrier morphology in time and space along the North Slope coast of Alaska between the United States-Canadian border and Cape Beaufort from 1947 to 2020. Changes considered in this study include number of barriers, area and perimeter, shoreline length, barrier sinuosity and width, presence and number of relict terminus features, presence and coverage of tundra vegetation, barrier orientation, and elevation metrics. Wave conditions are also summarized and related to changes in barrier morphology. The results in this report help to better predict future barrier evolution and prevalence along Alaska’s coast by increasing our understanding of Arctic barrier development, migration and degradation.

Alaska↗

USGS2015

Population dynamics of sea ducks: using models to understand the causes, consequences, evolution, and management of variation in life history characteristics

In this chapter, I explore population dynamics of sea ducks by developing population models. In determining which life history characteristics had the greatest influence on future population dynamics, adult female survival consistently had the highest sensitivity and elasticity and this result was robust across a wide range of life history parameter values. Conversely, retrospective models consistently found that the majority of annual variation in lambda was associate with variation in productivity. Stochastic models that are base on process variation and incorporate correlations among life history parameters are the most useful for visualizing the probability of achieving a desired management outcome. Effective management targets both the mean and the variance parameters and takes advantage of correlations among life history parameters. Example models demonstrate that sea duck species can achieve equal fitness using a variety of survival and productivity combinations. Sea duck populations will tend to have long time largest in terms of responding to management actions. Understanding the role of density-dependent population regulation is critical for effective sea duck management and conservation.

Book chapter↗

USGS2008

Cenozoic evolution of the abrupt Colorado Plateau–Basin and Range boundary, northwest Arizona: A tale of three basins, immense lacustrine-evaporite deposits, and the nascent Colorado River

In northwest Arizona, the relatively unextended Colorado Plateau gives way abruptly to the highly extended Colorado River extensional corridor within the Basin and Range province along a system of major west-dipping normal faults, including the Grand Wash fault zone and South Virgin–White Hills detachment fault. Large growth-fault basins developed in the hanging walls of these faults. Lowering of base level in the corridor facilitated development of the Colorado River and Grand Canyon. This trip explores stratigraphic constraints on the timing of deformation and paleogeographic evolution of the region. Highlights include growth-fault relations that constrain the timing of structural demarcation between the Colorado Plateau and Basin and Range, major fault zones, synextensional megabreccia deposits, nonmarine carbonate and halite deposits that immediately predate arrival of the Colorado River, and a basalt flow interbedded with Colorado River sediments. Structural and stratigraphic relations indicate that the current physiography of the Colorado Plateau–Basin and Range boundary in northwest Arizona began developing ca. 16 Ma, was essentially established by 13 Ma, and has changed little since ca. 8 Ma. The antiquity and abruptness of this boundary, as well as the stratigraphic record, suggest significant headward erosion into the high-standing plateau in middle Miocene time. Thick late Miocene evaporite and lacustrine deposits indicate that a long period of internal drainage followed the onset of extension. The widespread distribution of such deposits may signify, however, a large influx of surface waters and/or groundwater from the Colorado Plateau possibly from a precursor to the Colorado River. Stratigraphic relations bracket arrival of a through-flowing Colorado River between 5.6 and 4.4 Ma.

Arizona, California, Nevada↗

USGS2013

A deposit model for magmatic iron-titanium-oxide deposits related to Proterozoic massif anorthosite plutonic suite

This descriptive model for magmatic iron-titanium-oxide (Fe-Ti-oxide) deposits hosted by Proterozoic age massif-type anorthosite and related rock types presents their geological, mineralogical, geochemical, and geoenvironmental attributes. Although these Proterozoic rocks are found worldwide, the majority of known deposits are found within exposed rocks of the Grenville Province, stretching from southwestern United States through eastern Canada; its extension into Norway is termed the Rogaland Anorthosite Province. This type of Fe-Ti-oxide deposit dominated by ilmenite rarely contains more than 300 million tons of ore, with between 10- to 45-percent titanium dioxide (TiO 2 ), 32- to 45-percent iron oxide (FeO), and less than 0.2-percent vanadium (V). The origin of these typically discordant ore deposits remains as enigmatic as the magmatic evolution of their host rocks. The deposits clearly have a magmatic origin, hosted by an age-constrained unique suite of rocks that likely are the consequence of a particular combination of tectonic circumstances, rather than any a priori temporal control. Principal ore minerals are ilmenite and hemo-ilmenite (ilmenite with extensive hematite exsolution lamellae); occurrences of titanomagnetite, magnetite, and apatite that are related to this deposit type are currently of less economic importance. Ore-mineral paragenesis is somewhat obscured by complicated solid solution and oxidation behavior within the Fe-Ti-oxide system. Anorthosite suites hosting these deposits require an extensive history of voluminous plagioclase crystallization to develop plagioclase-melt diapirs with entrained Fe-Ti-rich melt rising from the base of the lithosphere to mid- and upper-crustal levels. Timing and style of oxide mineralization are related to magmatic and dynamic evolution of these diapiric systems and to development and movement of oxide cumulates and related melts. Active mines have developed large open pits with extensive waste-rock piles, but because of the nature of the ore and waste rock, the major environmental impacts documented at the mine sites are reported to be waste disposal issues and somewhat degraded water quality.

Scientific Investigations Report↗

USGS2013

A deposit model for magmatic iron-titanium-oxide deposits related to Proterozoic massif anorthosite plutonic suites

Scientific Investigations Report↗

USGS2011

An open-water electrical geophysical tool for mapping sub-seafloor heavy placer minerals in 3D and migrating hydrocarbon plumes in 4D

A towed-streamer technology has been developed for mapping placer heavy minerals and dispersed hydrocarbon plumes in the open ocean. The approach uses induced polarization (IP), an electrical measurement that encompasses several different surface-reactive capacitive and electrochemical phenomena, and thus is ideally suited for mapping dispersed or disseminated targets. The application is operated at sea by towing active electrical geophysical streamers behind a ship; a wide area can be covered in three dimensions by folding tow-paths over each other in lawn-mower fashion. This technology has already been proven in laboratory and ocean settings to detect IP-reactive titanium- and rare-earth (REE) minerals such as ilmenite and monazite. By extension, minerals that weather and accumulate/concentrate by a similar mechanism, including gold, platinum, and diamonds, may be rapidly detected and mapped indirectly- even when dispersed and covered with thick, inert sediment. IP is also highly reactive to metal structures such as pipelines and cables. Currently, the only means for mapping an oil-spill plume is to park a large ship in the ocean and drop a sampling string over the side, requiring hours of time per sampling point. The samples must then be chemically analyzed, adding additional time and expense. We believe that an extension of the marine IP technology could also apply to rapidly mapping both seafloor- blanket and disseminated hydrocarbon plumes in the open ocean, as hydrocarbon droplets in conductive seawater are topologically equivalent to a metal-plates-and-dielectric capacitor. Because the effective capacitance would be frequency-dependent on droplet size, the approach we advocate holds the potential to not only map, but also to characterize the evolution and degradation of such a plume over time. In areas where offshore oil field development has been practiced for extended periods, making IP measurements from a towed streamer may be useful for locating buried - nd exposed pipelines, as well as pipeline leaks. We believe this technique will be a more cost-effective method than drop-sampling to map and monitor hydrocarbon plumes in open ocean settings. A marine induced polarization system was used successfully to map a 15 km × 45 km swath of the ocean floor off eastern South Africa with 3-meter sampling along 200-meter-separated profiles. The survey detected titanium-bearing sands up to 15 meters below the seafloor. From preliminary laboratory work it is apparent that we can extend this technology to monitor significant environmental problems including anthropogenic and industrial waste washed into sensitive estuaries and sounds during storm-water runoff episodes, and also to map and characterize dispersed oil plumes in the seawater column in three dimensions, as well as movement and dispersal of both over time.

Conference Paper↗

USGS2017

A genetic signature of the evolution of loss of flight in the Galapagos cormorant

INTRODUCTION Changes in the size and proportion of limbs and other structures have played a key role in the evolution of species. One common class of limb modification is recurrent wing reduction and loss of flight in birds. Indeed, Darwin used the occurrence of flightless birds as an argument in favor of his theory of natural selection. Loss of flight has evolved repeatedly and is found among 26 families of birds in 17 different orders. Despite the frequency of these modifications, we have a limited understanding of their underpinnings at the genetic and molecular levels. RATIONALE To better understand the evolution of changes in limb size, we studied a classic case of recent loss of flight in the Galapagos cormorant ( Phalacrocorax harrisi ). Cormorants are large water birds that live in coastal areas or near lakes, and P. harrisi is the only flightless cormorant among approximately 40 extant species. The entire population is distributed along the coastlines of Isabela and Fernandina islands in the Galapagos archipelago. P. harrisi has a pair of short wings, which are smaller than those of any other cormorant. The extreme reduction of the wings and pectoral skeleton observed in P. harrisi is an attractive model for studying the evolution of loss of flight because it occurred very recently; phylogenetic evidence suggests that P. harrisi diverged from its flighted relatives within the past 2 million years. We developed a comparative and predictive genomics approach that uses the genome sequences of P. harrisi and its flighted relatives to find candidate genetic variants that likely contributed to the evolution of loss of flight. RESULTS We sequenced and de novo assembled the whole genomes of P. harrisi and three closely related flighted cormorant species. We identified thousands of coding variants exclusive to P. harrisi and classified them according to their probability of altering protein function based on conservation. Variants most likely to alter protein function were significantly enriched in genes mutated in human skeletal ciliopathies, including Ofd1 , Evc , Wdr34 , and Ift122 . We carried out experiments in Caenorhabditis elegans to confirm that a missense variant present in the Galapagos cormorant IFT122 protein is sufficient to affect ciliary function. The primary cilium is essential for Hedgehog (Hh) signaling in vertebrates, and individuals affected by ciliopathies have small limbs and ribcages, mirroring the phenotype of P. harrisi . We also identified a 4–amino acid deletion in the regulatory domain of Cux1 , a highly conserved transcription factor that has been experimentally shown to regulate limb growth in chicken. The four missing amino acids are perfectly conserved in all birds and mammals sequenced to date. We tested the consequences of this deletion in a chondrogenic cell line and showed that it impairs the ability of CUX1 to transcriptionally up-regulate cilia-related genes (some of which contain function-altering variants in P. harrisi ) and to promote chondrogenic differentiation. Finally, we show that positive selection may have played a role in the fixation of the variants associated with loss of flight in P. harrisi . CONCLUSION Our results indicate that the combined effect of variants in genes necessary for the correct transcriptional regulation and function of the primary cilium likely contributed to the evolution of highly reduced wings and other skeletal adaptations associated with loss of flight in P. harrisi . Our approach may be generally useful for identification of variants underlying evolutionary novelty from genomes of closely related species.

Science↗

USGS2009

Approaches to modeling weathered regolith

Sustainable soils are a requirement for maintaining human civilizations ( Carter and Dale 1974 ; Lal 1989 ). However, as the “most complicated biomaterial on the planet” ( Young and Crawford 2004 ), soils represent one of the most difficult systems to understand and model with respect to chemical, physical, and biological coupling over time (Fig. 1 ). Despite the complexity of these interactions, certain patterns in soil properties and development are universally observed and have been used in soil science as a means for classification. Elemental, mineralogical, or isotopic concentrations in soils plotted versus depth beneath the land surface comprise such patterns. Soil depth profiles are often reported for solid soil materials, and, less frequently, for solutes in soil pore waters. These profiles cross a large range in spatial scales that traditionally have been studied by different disciplines. For example, shallow, biologically active horizons are commonly defined as the soil zone in agronomic studies whereas the mobile layer of the regolith is referred to as soil in geomorphological studies. In contrast, many geochemical studies target chemical weathering to tens or even hundreds of meters in depth, sometimes extending the definition of “soils” to include the entire regolith down to parent bedrock or alluvium. Soil profiles also exhibit a large range in temporal scales ( Amundson 2004 ; Brantley 2008b ). Solid-state profiles document chemical and mineralogical changes integrated over the time scales of evolution of regolith from protolith. This “geologic time” can vary from tens to hundreds of years for weathered material developed on moraines deposited by active glaciers ( Anderson et al. 1997 ), to millions or possibly hundreds of millions of years of regolith evolution as documented in laterites and bauxites on stable cratons ( Nahon 1986 ). In contrast, solute profiles reflect much shorter time scales corresponding to the residence time of the soil water which commonly ranges from days to decades ( Stonestrom et al. 1998 ). Factors impacting soil minerals can therefore be related to geologically old processes while those impacting pore waters are related to contemporary processes. We first discuss a geochemical frame work for modeling soil profiles, including a simple scheme that depends on the extent of enrichment or depletion. Such profiles are comprised of reaction fronts affected by chemical, hydrologic, geologic and biologic processes that control soil evolution. We then present a hierarchy of models that have been used to interpret both solid state and solute compositions in regolith. The more simple approaches to model depletion in soils, using analytical models, are first described. The most elementary of these is a linear model that calculates rate constants from the slopes of either solid or solute weathering gradients: these rate constants represent lumped parameters that describe weathering in terms of an integrated reaction rate. Two other analytical models are then presented that have been used to fit solid state elemental profiles with exponential and sigmoidal functions. All of these analytical approaches are derived for models of soils as containing a limited number of components, phases, and species. At a more complex level, numerical models are then presented to elucidate how kinetic and transport parameters as well as chemical, hydrologic, and physical soil data can be incorporated. We consider two forms of these models, first relatively simple spreadsheet calculators and then more sophisticated multi-component, multi-phase reactive-transport numerical codes. Our treatment of reactive transport modeling is relatively cursory, in recognition of the treatment in the chapter by Steefel and Maher (2009 , this volume). Because these models incorporate more phases, components, and species than the other approaches and explicitly model the more fundamental reaction mechanisms involved, they generally have a greater need for parameterization. In our conclusion section, we discuss how this hierarchy of approaches can yield generalizations about soils that are often complementary.

Reviews in Mineralogy and Geochemistry↗

USGS1985

Remote sensing; a geophysical perspective

In this review of developments in the field of remote sensing from a geophysical perspective, the subject is limited to the electromagnetic spectrum from 0.4 mu m to 25 cm. Three broad energy categories are covered: solar reflected, thermal infrared, and microwave.The reflected solar region has been the most intensely studied. Photointerpretation of images from individual spectral bands or from color composites remains the most widely used method of analysis. New instrumentation and digital processing, based on analysis of laboratory and field spectra, provide significant advances that are beginning to be applied to resource exploration. Color compositing techniques have been effectively used to detect the characteristic spectral reflectance features of iron oxides and hydroxyl-bearing materials in satellite multispectral data for mapping areas of hydrothermal alteration. Airborne spectrometers can now detect individual spectral features of many minerals which are diagnostic of different stages of hydrothermal alteration. Evolution was from discrimination, based on empirical experience, to mineralogic identification and leading to quantification. Current developments also indicate new, promising extensions to vegetated terrains.Advances in thermal infrared studies are due to development of thermal models that permit mapping of physical property variations and to detection of spectral differences that provide important compositional information. Analysis techniques are still in their infancy, and thermal satellite data remain appropriate only for regional investigations.Microwave data have been acquired mainly with radar systems, which can provide very high resolution from space, but use of textural and slope information has had limited application. Long-wavelength radiation has been shown to penetrate dry materials, and this may be applicable in extremely arid regions.

Geophysics↗