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USGS2021

A climate-mediated shift in the estuarine habitat mosaic limits prey availability and reduces nursery quality for juvenile salmon

The estuarine habitat mosaic supports the reproduction, growth, and survival of resident and migratory fish species by providing a diverse portfolio of unique habitats with varying physical and biological features. Global climate change is expected to result in increasing temperatures, rising sea levels, and changes in riverine hydrology, which will have profound effects on the extent and composition of the estuarine habitat mosaic and its associated nursery quality for juvenile fish. We used a spatially explicit bioenergetics model to assess how different climate change scenarios might affect juvenile salmon growth rate potential relative to present day conditions in the Nisqually River Delta, WA, USA. The model indicated that prey-rich habitats such as emergent salt marshes and eelgrass meadows were most likely to facilitate growth, and that reductions in their areal extent and accessibility could have severe consequences for salmon. For instance, unmitigated sea-level rise halved the predicted extent of low- and high-elevation emergent salt marsh, leading to a 30% reduction in end-of-season weights. Increasing water temperatures compounded these effects during the late spring and summer such that the average daily growth rate of an individual fish decreased by an additional 5–50% when compared to the effects of sea-level rise alone. Lethal temperatures (> 24 °C) were infrequently observed, but they were more likely to occur during summer low tides in the mudflat and eelgrass habitats when accessibility to prey-rich marsh was minimal, thereby limiting foraging capacity and the availability of thermal refugia. Our findings indicate that, barring the enactment of targeted management strategies, rising tidal levels and increasing ocean temperatures may reduce the quality of the estuarine habitat mosaic for out-migrating salmon and other sensitive fish species.

Washington↗

USGS2021

Genetic structure and diversity of the mustard hill coral Porites astreoides along the Florida Keys reef tract

Increases in local and global stressors have led to major declines in coral populations throughout the western Atlantic. While abundances of other species have declined, however, the relative abundance of the mustard hill coral, Porites astreoides , has increased. Porites astreoides is relatively resilient to some stressors, and because of its mixed reproductive strategies, its populations often recover quickly following disturbances. The ability for P. astreoides to continue as a potential “winner” in western Atlantic reefs relies on maintaining sufficient genetic variation within populations to support acclimatization and adaptation to current and future environmental change. Without high genetic diversity and gene flow within the population, it would have limited capacity for adaptation and the species’ competitive advantages could be short-lived. In this study, we determined the genetic relatedness of 37 P. astreoides colonies at four shallow reefs along the offshore Florida Keys Reef Tract (FKRT), a region particularly hard-hit by recent disturbances. Using previously designed microsatellite markers, we determined the genetic diversity and connectivity of individuals among and between sites. Our results suggest that the FKRT likely contains a single, well-mixed genetic population of P. astreoides , with high levels of gene flow and evidence for larval migration throughout the region. This suggests that regional populations of P. astreoides likely have a higher chance of maintaining resilience than many other western Atlantic species as they face current and future disturbances.

Florida↗

USGS2011

CDFISH: an individual-based, spatially-explicit, landscape genetics simulator for aquatic species in complex riverscapes

We introduce Cost Distance FISHeries (CDFISH), a simulator of population genetics and connectivity in complex riverscapes for a wide range of environmental scenarios of aquatic organisms. The spatially-explicit program implements individual-based genetic modeling with Mendelian inheritance and k -allele mutation on a riverscape with resistance to movement. The program simulates individuals in subpopulations through time employing user-defined functions of individual migration, reproduction, mortality, and dispersal through straying on a continuous resistance surface.

Conservation Genetics Resources↗

USGS2013

Influence of drought on salamander occupancy of isolated wetlands on the southeastern Coastal Plain of the United States

In the southeastern U.S., changes in temperature and precipitation over the last three decades have been the most dramatic in winter and spring seasons. Continuation of these trends could negatively impact pond-breeding amphibians, especially those that rely on winter and spring rains to fill seasonal wetlands, trigger breeding, and ensure reproductive success. From 2009 to 2012, we monitored Spring and Fall presence of aquatic stages (larval and paedomorphic, gilled adult) of a winter-breeding amphibian (the mole salamander, Ambystoma talpoideum) and used multi-season models to estimate occupancy, local colonization and extinction. Seasonal estimates of occupancy, corrected for imperfect detection, declined from 22.3 % of ponds in Spring 2009 to 9.9 % in Fall 2012. Our best supported model suggested that changes in occupancy were driven by increased rates of extinction that corresponded with drought-related drying of ponds. Based on uncertainty in climate change projections for the Southeast, we present a conceptual model of predicted changes in wetland hydroperiods across a landscape with projected decreases and increases in future precipitation. Such precipitation changes could alter wetland hydroperiods, facilitate extinctions of species adapted to short, intermediate or long hydroperiod environments and, ultimately, modify the composition of amphibian communities within freshwater wetland ecosystems.

Florida↗

USGS2022

Manatee population traits elucidated through photo-identification

Data on the demography and distribution of wildlife populations are important for informing conservation and management decisions; however, determination of life history traits and population trends often are elusive. All four extant species in the order Sirenia are deemed vulnerable to extinction; therefore, determining the demography and distribution for populations worldwide is crucial. Aerial surveys, radio-tagging and tracking, genetic sampling and analyses, health assessments, carcass examination, and photographic documentation are all techniques used to study sirenian populations. A 40 +-year computer-aided catalog of images and demography data collected on Florida manatees enables searches of individuals by descriptions of feature (scar) types and has enabled estimates of annual survival and reproductive rates, documented extra-limital movements, and advanced modeling designs. Photography is discussed as a method for the documentation of unique and acquired features specifically on Florida manatees. By means of these features, individual Florida manatees have been re-identified as far from their established range as Cape Cod, Massachusetts, Houston, Texas, and in Cuba, The Bahamas, and Mexico. The length of gestation (11–13 months) and calf dependency (1–3 years), and potential longevity in the wild (> 50 years), have been verified. To meet the challenge of an increasing number of images collected with the advent of digital photography, there has been an increasing interest and potential for new techniques to assist with individual identification. Several researchers are utilizing drones and artificial intelligence to find, photograph, and streamline the individual identification of sirenians as well as other marine mammal species. New techniques have potential to simplify the photographic identification of Florida manatees. Photographic documentation could be a model for demographic and distribution research of sirenian populations outside of Florida and as a tool to monitor the viability of sirenian populations, particularly as threats emerge due to anthropogenic pressures and global climate change.

Mammalian Biology↗

USGS2022

Tooth wear and the apparent consumption of human foods among American black bears (Ursus americanus) in Great Smoky Mountains National Park, USA

Stable isotope analyses of hair have been used to estimate the consumption of human foods by American black bears ( Ursus americanus ). Consumption of human foods influences body mass and reproductive success of bears. However, the underlying factors that cause some bears to become conflict bears and resort to consuming human foods as a portion of their diet are not fully understood. We collected hair samples for stable isotope analysis from 51 black bears in Great Smoky Mountains National Park, Tennessee, USA in 2006. We used δ 13 C values of hairs to determine if the bears were consuming C 3 -based (natural foods) or C 4 -based (human foods) diets, and δ 15 N values, which increase with more meat in the diet, as a further indication of the consumption of human foods. Male bears with the heaviest tooth wear had a combination of higher δ 15 N and δ 13 C values, suggesting that they consume human foods to a greater extent than do other black bears. Based on our results, we hypothesize that tooth wear, and thus dental health, may play a role in the consumption of human foods by larger, male bears.

Tennessee↗

USGS2025

Management and natural regeneration in multiple ponderosa pine forests of the southwestern United States

Management treatments in ponderosa pine forests of the southwestern United States (SWUS) are largely done for wildfire mitigation and restoration to lower tree densities. However, lack of natural ponderosa pine regeneration in undisturbed forests (i.e., no occurrence of stand-replacing events) may require management treatments to promote regeneration. We conducted a field and modeling study in 77 ponderosa pine forests across 7 SWUS locations, with the goal of evaluating management impacts on recent natural regeneration ( ∼ "> ∼ 20 y). We categorized management into 3 broad categories: unmanaged, thinned from above and/or below (thinning), and thinned + "> + understory burned (burning). Although climate suitability declined from 1981-2020, management treatments – especially burning – promoted natural regeneration. High density regeneration, an undesirable outcome, occurred in 21 % "> % of managed sites. In addition to effects on near-surface temperature and soil moisture, management conducive to natural regeneration was associated with the density of competing tree species, understory litter and debris cover, and adult tree cone production. Natural regeneration occurred ∼ "> ∼ 5-10 y following management, underscoring sustained effects of management treatments on tree reproduction success. Our results show that forest management treatments have the potential to promote natural ponderosa pine regeneration in the SWUS, sometimes at undesirable high densities. Study Implications: Natural ponderosa pine regeneration is declining in forests of the southwestern United States (SWUS), and may increasingly be incorporated as a goal of forest management treatments. Across a diverse set of managed and unmanaged SWUS forest sites, we found that contemporary management treatments – especially thinning + "> + prescribed understory burning – supported natural ponderosa pine regeneration over the past two decades, which were climatically unfavorable in much of the region. Our results show that existing forest management treatments have the potential to promote natural ponderosa pine regeneration in the SWUS, but will require assessment and modification through time to remain effective.

Forest Science↗

USGS1979

Scent-marking in lone wolves and newly formed pairs

Scent-marking was studied in wolves (Canis lupus) along 133 km of tracks in northern Minnesota during winters of 1975 to 1976 and 1976 to 1977 and in two captive packs and four captive pairs for various periods. Lone wolves, which possess neither mates nor territories, rarely marked by raised-leg urination and defaecated and urinated less along roads and trails, where territorial pairs and packs generally marked. Newly formed pairs marked the most, eventually decreasing their rates to those of established packs. Generally, wolves that scent-marked also bred, whereas non-marking wolves usually did not breed. Scent-marking apparently is important to the success of courtship in new pairs and to reproductive synchrony in established pairs, as well as serving a territorial function.

Animal Behaviour↗

USGS1991

Movements of Yellowstone grizzly bears

Ninety-seven grizzly bears Ursus arctos horribilis were radio-located 6299 times during 1975–1987. Annual range sizes differed by sex, age, reproductive status and amount of precipitation. Females exhibited greater fidelity to seasonal and annual ranges than males. Weaned female offspring generally remained in the vicinity of the maternal range, while weaned males often made substantial movements to unexplored country. Average total home range size was 884 km 2 for females and 3757 km 2 for males. Males consistently exhibited greater indices of movement and range sizes than females. All cohorts had larger mean ranges during this study than during the period 1959–1969 when the population had access to open garbage dumps. Movements and elevational distribution of all cohorts were related to availability of whitebark pine Pinus albicaulis seeds. We hypothesized that females with cubs-of-the-year and yearlings were displaced from most productive habitats during seasons and years of limited food availability.

Idaho;Montana;Wyoming↗

USGS1981

Response of adult mallard ducks to ingested South Louisiana crude oil

Adult mallards ( Anas platyrhynchos ) were fed South Louisiana crude oil as 0.25 and 2.5% of the total diet for 26 weeks to assess the chronic effects of oil ingestion. Additional birds were fed diets containing either 1.0% of a paraffin mixture or clean feed. No birds died during the study, nor were their body weights significantly depressed. Oviduct weight at necropsy was greatly reduced in hens on the 2.5% oil diet and also was significantly reduced in hens on the 0.25% oil diet when compared with controls. Male reproductive organs were not atrophied by treatment. Hens on oil-treated diets laid fewer eggs than those on the control diet; however, eggs from treated hens hatched as well as those from controls when artificially incubated. Pathological or biochemical alterations were no greater in the treated birds than in controls.

Environmental Research↗

USGS1995

Can otolith microchemistry chart patterns of migration and habitat utilization in anadromous fishes?

Seasonal and ontogenetic patterns in estuarine and coastal migrations of anadromous fish species have important consequences to their survival, growth, recruitment, and reproduction. We tested the hypothesis that otolith (sagitta) microchemistry can document the environmental history of individual fish across an estuarine salinity gradient. Juvenile striped bass, Morone saxatilis (Walbaum), (80 days posthatch) were reared for 3 wk in aquaria at two temperatures and six salinities. The ratio of strontium/calcium ( Sr Ca "> SrCa ) deposited in the sagittal otoliths of reared juveniles was positively related to salinity. Temperature and growth rate had relatively minor, but significant effects on the Sr Ca "> SrCa ratio. In a second experiment, juveniles (80 days posthatch) were exposed to increasing salinity (0 ppt to 25 ppt) and then decreasing salinity (25 ppt to 0 ppt) over a 20-wk period. Electron microprobe examination of the otoliths from these juveniles showed a gradual rise and decline in Sr Ca "> SrCa during the experimental period which corresponded directly with experimental changes in salinity. Field data on subadult and adult striped bass corroborated the laboratory analyses and indicated a logistic relationship between ambient salinity and otolith Sr Ca "> SrCa ratio. Verification studies support the use of otolith microchemistry to measure migratory schedules and habitat utilization patterns in anadromous striped bass populations.

Journal of Experimental Marine Biology and Ecology↗

USGS1976

Morphologic interpretation of fertile structures in glossopterid gymnosperms

The problem of determining affinity among glossopterid gymnosperms is beset by deficiencies in preservation, natural dissociation of parts, and scarcity of features assuredly critical for morphologic comprarison. The glossopterids probably are not a very heterogeneous group of plants, but this is difficult to prove. The Gondwana glacial "hiatus" has resulted in the omission of a critical chapter glossopterid evolution. As a consequence, morphologic features and phyletic probabilities must be evaluated on a much more hypothetical basis than would otherwise be justified. Confusion has arisen from the lack of morphologic terms that permit clear discussion of a newly evolved type of reproductive structure in glossopterids. The structure, here designated a "fertiliger", consists of a leafy bract, a partially adnate stalk, and a fertile head or capitulum. Seven types of fertile structures are discussed, all of which are bilaterally symmetrical and have different features on dorsiventral surfaces. I regard all fertiligers as ovulate but this interpretation may bot be acceptable to some workers; others may not accept dorsiventral organization of the capitulum as being fundamental. Among glossopterids, however, in spite of differences in preservation that may seem to support a variant interpretation, these ovulate fertiligers are the distinctive features that show general consistency. A single fertile bract bearing several capitula, as exemplified by Lidgettonia, is called a compound fertiliger. Staminate structures (microsporophylls) of glossopterids are separately classified as Eretmonia, Glossotheca, and possibly as other taxa. Only the manner of sporangial attachment is not entirely clear. It seems likely the staminate parts have previously been confused with scale leaves and are actually coextensive in distribution with the glossopterids. A tentative phyletic model suggests the distant derivation of glossopterids from middle Carboniferous cordaiteans. Many details must be speculative due to the lack of a pertinent fossil record, but this interpretation accounts for some features that have no counterpart in pteridosperms. Permineralized ovules from Antarctica provide general support for this working hypothesis, but specific evidence is lacking. Furthermore, it seems unlikely angiosperms originated from glossopterids; it is more reasonable to consider the glossopterids as possible distant ancestors of the Gnetales. ?? 1976.

Review of Palaeobotany and Palynology↗

USGS1982

A review of pond zooplankton production and fertilization for the culture of larval and fingerling striped bass

Successful culture of the planktivorous fry of warmwater fish species such as striped bass ( Morone saxatilis ) depends heavily upon the composition and density of zooplankton established in rearing ponds during the 4–6-week culture period. The paper reviews the growth, reproduction, and succession patterns of zooplankton in ponds, organic and inorganic pond fertilization, and predator—prey relationships as they relate to the culture of striped bass fingerlings. Based upon this information, a pond management strategy is proposed using combinations of organic and liquid inorganic fertilizers and crustacean zooplankton inoculation to develop and maintain the zooplankton forage base in striped bass rearing ponds.

Aquaculture↗

USGS1993

Dioxin-like toxic potency in Forster's tern eggs from Green Bay, Lake Michigan, North America

The endangered Forster's tern (Sternaforsteri) population on Green Bay, Wisconsin has exhibited symptoms of embryotoxicity, congenital deformities, and poor hatching success. The putative causal agents are planar halogenated hydrocarbons (PHH). The objectives of this study were: 1) to evaluate the toxic potency of PHHs in extracts of Forster's tern eggs taken from Green Bay, Lake Michigan and a reference site, Lake Poygan, WI; and 2) to compare the toxic potencies of the egg extracts with the reproductive data available from the same water bird colonies. The relative toxic potency of the egg extracts was assessed with the H4IIE bioassay system to obtain 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalents (TCDD-EQ). The average concentrations of TCDD-EQ in Forster's tern eggs were 214.5 pg/g and 23.4 pg/g from Green Bay and Lake Poygan, respectively. The bioassay results presented here concur with the biological effects and chemical analyses information from other studies on the same Forster's tern colonies.

Chemosphere↗

USGS1993

Biomagnification of bioassay derived 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalents

In recent years contamination of the Great Lakes ecosystem with planar chlorinated hydrocarbons (PCHs) has attracted considerable concern due to their known reproductive and teratogenic effects. The H4IIE bioassay has been standardized as a means of measuring the biological potency of a PCH mixture as 2,3,7,8-tetrachloro-p-dibenzodioxin equivalents (TCDD-EQ). Using this bioassay we have investigated the biomagnification of TCDD-EQ in a semi-closed ecosystem. The biomagnification of TCDD-EQ is demonstrated and results indicate that the food chain is the major pathway for TCDD-EQ through this ecosystem. The H4IIE assay system is demonstrated to be a viable integrative measure of the total concentration of TCDD-EQ in different trophic levels.

Chemosphere↗

USGS1982

Hormonal responses and tolerance to cold of female quail following parathion ingestion

Thirty-week-old female bobwhite quail (Colinus virginianus), maintained at 26 + 1?C, were provided diets containing 0,25, or 100 ppm parathion ad libitum. After 10 days, birds were exposed to mild cold (6 + 1?C) for 4,8, 12, 24, or 48 hr. Brain acetylcholinesterase activity was inhibited in a dose-dependent manner in birds receiving 25 and 100 ppm parathion. Body weight, egg production, and plasma luteinizing hormone and progesterone concentrations were reduced in birds receiving 100 ppm parathion compared with other groups. Cold exposure did not alter plasma corticosterone levels in the 0- and 25-ppm parathion groups, but a two- to five fold elevation of plasma corticosterone was observed in birds fed 100 ppm parathion. These findings indicate that (i) short-term ingestion of parathion can impair reproduction possibly by altering gonadotropin or steroid secretion, and (ii) tolerance to cold may be reduced following ingestion of this organophosphate.

Pesticide Biochemistry and Physiology↗

USGS1985

The effects of heptachlor and lindane on birds, Columbia Basin, Oregon and Washington, 1976-1981

The effects of heptachlor seed treatments on birds in the vicinity of the Umatilla National Wildlife Refuge, Oregon and Washington, were investigated from 1978 to 1981. An egg was collected from each of 60 nests representing six species. Heptachlor epoxide (HE) residues were detected in 35 eggs and were particularly high (8–13 μg g −1 ) in a few eggs of the black-billed magpie, mallard, and ring-necked pheasant. These residues were within the range that induced reproductive problems in other species in the area. Diagnostically lethal residue levels (⩾ 9 μg g −1 ) of HE were detected in the brains of nine birds (four species). Most of the avifauna in the area contained residues of HE and related compounds. Lindane, the replacement chemical for heptachlor, did not produce adverse effects in birds, and residues were not detected in either their eggs or brains.

Science of the Total Environment↗

USGS1986

Embryonic mortality and abnormalities of aquatic birds: Apparent impacts of selenium from irrigation drainwater

Severe reproductive impacts were found in aquatic birds nesting on irrigation drainwater ponds in the San Joaquin Valley of California. Of 347 nests studied to late incubation or to hatching, 40.6% had at least one dead embryo and 19.6% had at least one embryo or chick with an obvious external anomaly. The deformities were often multiple and included missing or abnormal eyes, beaks, wings, legs and feet. Brain, heart, liver and skeletal anomalies were also present. Mean selenium concentrations in plants, invertebrates, and fish from the ponds were 22–175 ppm (dry weight), about 12 to 130 times those found at a nearby control area. Bird eggs (2.2–110 ppm) and livers (19–130 ppm) also contained elevated levels of selenium. Aquatic birds may experience similar problems in other areas where selenium occurs at elevated levels.

California↗

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