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Science to support aquatic animal health

Healthy aquatic ecosystems are home to a diversity of plants, invertebrates, fish and wildlife. Aquatic animal populations face unprecedented threats to their health and survival from climate change, water shortages, habitat alteration, invasive species and environmental contaminants. These environmental stressors can directly impact the prevalence and severity of disease in aquatic populations. For example, periodic fish kills in the upper Chesapeake Bay Watershed are associated with many different opportunistic pathogens that proliferate in stressed fish populations. An estimated 80 percent of endangered juvenile Puget Sound steelhead trout die within two weeks of entering the marine environment, and a role for disease in these losses is being investigated. The introduction of viral hemorrhagic septicemia virus (VHSV) into the Great Lakes—a fishery worth an estimated 7 billion dollars annually—resulted in widespread fish die-offs and virus detections in 28 different fish species. Millions of dying sea stars along the west coast of North America have led to investigations into sea star wasting disease. U.S. Geological Survey (USGS) scientists are assisting managers with these issues through ecological investigations of aquatic animal diseases, field surveillance, and research to promote the development of mitigation strategies.

Fact Sheet↗

Early Ordovician gastropod opercula and epicontinental seas

Collections made for some years from Lower Ordovician rocks by many geologists have established that the heavy calcareous operculum of the gastropod Ceratopea is almost never found associated with a shell and that commonly this operculum is secondarily silicified. Ceratopea may have lived in a stressed habitat and may have been essentially the only shelled invertebrate present. Presumably these animals grazed on algal mats and mounds growing in areas of water slightly more saline than open marine water and were killed by an influx of hypersaline water. Subsequent decay of soft parts would permit the operculum to rot off and would also lighten the shell so that it could float away. Pene-contemporaneous silicification of calcareous opercula on the Ordovician sea bottom is postulated. Some Middle Ordovician opercula of the Middle to Late Ordovician genus Maclurites serve to test this speculation. These opercula also occur in geologic settings which may be interpreted in terms of kill of animal, wafting away of shell, and secondary silicification of operculum.

Alabama, Arkansas, Colorado, Georgia, Maryland, Ne↗

Geology and ground water in Russian River Valley areas and in Round, Laytonville, and Little Lake Valleys, Sonoma and Mendocino Counties, California

This report describes the occurrence, availability, and quality of ground water in seven valley areas along the course of the Russian River in Sonoma and Mendocino Counties, Calif., and in three valleys in the upper drainage reach of the Eel River in Mendocino County. Except for the westward-trending lower Russian River valley, the remaining valley areas along the Russian River (Healdsburg, Alexander, Cloverdale, Sanel, Ukiah, and Potter Valleys) lie in northwest-trending structurally controlled depressions formed in marine rocks of Jurassic and Cretaceous age. The principal aquifer in all the valleys is the alluvium of Recent age, which includes highly permeable channel deposits of gravel and sand. Water for domestic, irrigation, industrial, and other uses is developed by (1) direct diversion from the Russian River and its tributaries, (2) withdrawal of ground water and river water from shallow wells near the river, and (3) withdrawals of ground water from wells in alluvial deposits at varying distances from the river. Surface water in the Russian River and most tributaries is of good chemical quality. The water is a calcium magnesium bicarbonate type and contains 75,200 parts per million of dissolved solids. Ground water is also of good chemical quality throughout most of the drainage basin, but the concentration of dissolved solids (100-300 parts per million) is somewhat higher than that in the surface water. Round, Laytonville, and Little Lake Valleys are in central and northern Mendocino County in the drainage basin of the northwestward flowing Eel River. In Round Valley the alluvium of Recent age yields water of good chemical quality in large quantities. Yields are lower and the chemical quality poorer in Laytonville Valley. Ground water in Little Lake Valley is relatively undeveloped. Selected descriptions of wells, drillers' logs, chemical analyses, and hydrographs showing water-level fluctuations are included in the report. Accompanying maps show the distribution of water-bearing formations and the location of wells.

Water Supply Paper↗

Archive of digital chirp subbottom profile data collected during USGS cruise 10BIM04 offshore Cat Island, Mississippi, September 2010

In September of 2010, the U.S. Geological Survey (USGS), in cooperation with the U.S. Army Corps of Engineers (USACE), conducted a geophysical survey to investigate the geologic controls on barrier island framework of Cat Island, Miss., as part of a broader USGS study on Barrier Island Mapping (BIM). These surveys were funded through the Mississippi Coastal Improvements Program (MsCIP) and the Northern Gulf of Mexico (NGOM) Ecosystem Change and Hazard Susceptibility Project as part of the Holocene Coastal Evolution of the Mississippi-Alabama Region Subtask. This report serves as an archive of unprocessed digital chirp subbottom data, trackline maps, navigation files, GIS files, Field Activity Collection System (FACS) logs, and formal FGDC metadata. Gained (showing a relative increase in signal amplitude) digital images of the seismic profiles are also provided. Refer to the Acronyms page for expansions of acronyms and abbreviations used in this report. The USGS Saint Petersburg Coastal and Marine Science Center (SPCMSC) assigns a unique identifier to each cruise or field activity. For example, 10BIM04 tells us the data were collected in 2010 during the fourth field activity for that project in that calendar year. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the field activity identification (ID). All chirp systems use a signal of continuously varying frequency; the EdgeTech SB-512i system used during this survey produces high-resolution, shallow-penetration (typically less than 50 milliseconds (ms)) profile images of sub-seafloor stratigraphy. The towfish contains a transducer that transmits and receives acoustic energy; it was housed within a float system (built at the SPCMSC), which allows the towfish to be towed at a constant depth of 1.07 meters (m) below the sea surface. As transmitted acoustic energy intersects density boundaries, such as the seafloor or sub-surface sediment layers, some energy is reflected back toward the transducer, received, and recorded by a Personal Computer (PC)-based seismic acquisition system. This process is repeated at regular time intervals (for example, 0.125 seconds (s)), and returned energy is recorded for a specific duration (for example, 50 ms). In this way, a two-dimensional (2-D) vertical image of the shallow geologic structure beneath the ship track is produced. Figure 1 displays the acquisition geometry. Refer to table 1 for a summary of acquisition parameters and table 2 for trackline statistics. The archived trace data are in standard Society of Exploration Geophysicists (SEG) SEG Y rev. 0 format (Barry and others, 1975); the first 3,200 bytes of the card image header are in American Standard Code for Information Interchange (ASCII) format instead of Extended Binary Coded Decimal Interchange Code (EBCDIC) format. The SEG Y files may be downloaded and processed with commercial or public domain software such as Seismic Unix (SU) (Cohen and Stockwell, 2010). See the How To Download SEG Y Data page for download instructions. The printable profiles provided here are GIF images that were processed and gained using SU software, and they can be viewed from the Profiles page or from links located on the trackline maps; refer to the Software page for links to example SU processing scripts. The SEG Y files are available on the DVD version of this report or on the Web, downloadable via the USGS Coastal and Marine Geoscience Data System (http://cmgds.marine.usgs.gov). The data are also available for viewing using GeoMapApp (http://www.geomapapp.org) and Virtual Ocean (http://www.virtualocean.org) multi-platform open source software.

Mississippi↗

Calibration of carbonate-water triple oxygen isotope fractionation: Seeing through diagenesis in ancient carbonates

High precision triple oxygen isotope measurements of carbonates can better constrain temperatures and oxygen isotope compositions of seawater through geologic time than 18 O/ 16 O measurements alone, but lack of a definitive calibration has hindered progress. In this study, we fluorinated both carbonate and water samples to measure quantitatively the triple oxygen isotope composition of each phase. We compared the oxygen isotope fractionation between carbonate and water for different carbonate materials: calcite synthesized with and without carbonic anhydrase, abiogenic calcite from Devils Hole, and extant biogenic calcite and aragonite of marine origin. We found similar 1000 lnα 18 O cc-wt values for all materials and combined the results with the high temperature experimental data of O'Neil et al. (1969) , resulting in the following fractionation equation ( T in Kelvins) 1000 ln α 18 O cc - w t = 2.84 ( ± 0.02 ) × 10 6 T 2 - 2.96 ( ± 0.19 ) "> 1000lnα18Occ-wt=2.84(±0.02)×106T2-2.96(±0.19) . The calcite triple oxygen isotope values yielded a θ - T relationship of θ cc-wt = –1.39(±0.01)/ T + 0.5305 whereas the aragonite triple oxygen isotope values yielded a θ - T relationship of θ ara-wt = –1.53(±0.02)/ T + 0.5305. The calcite-water triple oxygen isotope equilibrium fractionation equation for natural samples is Δ 17 ′ O cc - Δ 17 ′ O wt = 2.84 ( ± 0.02 ) × 10 6 T 2 - 2.96 ( ± 0.19 ) - 1.39 ( ± 0.01 ) T + 0.5305 - λ "> Δ17′Occ-Δ17′Owt=2.84(±0.02)×106T2-2.96(±0.19)-1.39(±0.01)T+0.5305-λ . The combined 1000 lnα 18 O and 1000 lnα 17 O relationships can be used to assess equilibrium in ancient samples and to evaluate potential secular changes in the δ 18 O value of seawater. Most of the Phanerozoic samples analyzed in this study, which were determined to be pristine in previous studies, have undergone some level of diagenesis. Two samples appear to preserve their original oxygen isotope compositions and suggest a cool ocean with a δ 18 O value similar to the modern ocean. Using a fluid-rock interaction model, we can “see through” the diagenetic process and estimate the triple oxygen isotope composition of the carbonate prior to alteration. In doing so, we show that for the time intervals and sample locations measured in this study, Phanerozoic oceans had a comparable range of oxygen isotope compositions and temperatures as modern seawater.

Geochemica et Cosmochimica Acta↗

Extreme 34S depletions in ZnS at the Mike gold deposit, Carlin Trend, Nevada: Evidence for bacteriogenic supergene sphalerite

We identified submicrometer-sized framboidal sphalerite (ZnS) below the base of supergene oxidation in a Carlin-type gold deposit of Eocene age in Nevada, United States, where the framboidal sphalerite forms a blanket-like body containing >400,000 metric tons of zinc. Framboidal sphalerite <0.1 ??m in diameter, formed in the early Miocene, ranges from <0.1 to 0.35 mol% FeS; the ??34S values range from -25??? to -70???, the lowest values measured in a marine or terrestrial environment. These S isotope data demonstrate the involvement of sulfate-reducing bacteria and provide the first documentation that sphalerite can form significant supergene sulfide-enrichment blankets.

Geology↗

Petroleum systems of the San Joaquin Basin Province, California -- Geochemical characteristics of oil types

New analyses of 120 oil samples combined with 139 previously published oil analyses were used to characterize and map the distribution of oil types in the San Joaquin Basin, California. The results show that there are at least four oil types designated MM, ET, EK, and CM. Most of the oil from the basin has low to moderate sulfur content (less than 1 weight percent sulfur), although a few unaltered MM oils have as much as 1.2 weight percent sulfur. Reevaluation of source rock data from the literature indicate that the EK oil type is derived from the Eocene Kreyenhagen Formation, and the MM oil type is derived, in part, from the Miocene to Pliocene Monterey Formation and its equivalent units. The ET oil type is tentatively correlated to the Eocene Tumey formation of Atwill (1935). Previous studies suggest that the CM oil type is derived from the Late Cretaceous to Paleocene Moreno Formation. Maps of the distribution of the oil types show that the MM oil type is restricted to the southern third of the San Joaquin Basin Province. The composition of MM oils along the southern and eastern margins of the basin reflects the increased contribution of terrigenous organic matter to the marine basin near the Miocene paleoshoreline. EK oils are widely distributed along the western half of the basin, and ET oils are present in the central and west-central areas of the basin. The CM oil type has only been found in the Coalinga area in southwestern Fresno County. The oil type maps provide the basis for petroleum system maps that incorporate source rock distribution and burial history, migration pathways, and geologic relationships between hydrocarbon source and reservoir rocks. These petroleum system maps were used for the 2003 U.S. Geological Survey resource assessment of the San Joaquin Basin Province.

California↗

Water quality, streamflow conditions, and annual flow-duration curves for streams of the San Juan–Chama Project, southern Colorado and northern New Mexico, 1935-2010

The Albuquerque–Bernalillo County Water Utility Authority supplements the municipal water supply for the Albuquerque metropolitan area, in central New Mexico, with water diverted from the Rio Grande. Water diverted from the Rio Grande for municipal use is derived from the San Juan–Chama Project, which delivers water from streams in the southern San Juan Mountains in the Colorado River Basin in southern Colorado to the Rio Chama watershed and the Rio Grande Basin in northern New Mexico. The U.S. Geological Survey, in cooperation with Albuquerque–Bernalillo County Water Utility Authority, has compiled historical streamflow and water-quality data and collected new water-quality data to characterize the water quality and streamflow conditions and annual flow variability, as characterized by annual flow-duration curves, of streams of the San Juan–Chama Project. Nonparametric statistical methods were applied to calculate annual and monthly summary statistics of streamflow, trends in streamflow conditions were evaluated with the Mann–Kendall trend test, and annual variation in streamflow conditions was evaluated with annual flow-duration curves. The study area is located in northern New Mexico and southern Colorado and includes the Rio Blanco, Little Navajo River, and Navajo River, tributaries of the San Juan River in the Colorado River Basin located in the southern San Juan Mountains, and Willow Creek and Horse Lake Creek, tributaries of the Rio Chama in the Rio Grande Basin. The quality of water in the streams in the study area generally varied by watershed on the basis of the underlying geology and the volume and source of the streamflow. Water from the Rio Blanco and Little Navajo River watersheds, primarily underlain by volcanic deposits, volcaniclastic sediments and landslide deposits derived from these materials, was compositionally similar and had low specific-conductance values relative to the other streams in the study area. Water from the Navajo River, Horse Lake Creek, and Willow Creek watersheds, which are underlain mostly by Cretaceous-aged marine shale, was compositionally similar and had large concentrations of sulfate relative to the other streams in the study area, though the water from the Navajo River had lower specific-conductance values than did the water from Horse Lake Creek above Heron Reservoir and Willow Creek above Azotea Creek. Generally, surface-water quality varied with streamflow conditions throughout the year. Streamflow in spring and summer is generally a mixture of base flow (the component of streamflow derived from groundwater discharged to the stream channel) diluted with runoff from snowmelt and precipitation events, whereas streamflow in fall and winter is generally solely base flow. Major- and trace-element concentrations in the streams sampled were lower than U.S. Environmental Protection Agency primary and secondary drinking-water standards and New Mexico Environment Department surface-water standards for the streams. In general, years with increased annual discharge, compared to years with decreased annual discharge, had a smaller percentage of discharge in March, a larger percentage of discharge in June, an interval of discharge derived from snowmelt runoff that occurred later in the year, and a larger discharge in June. Additionally, years with increased annual discharge generally had a longer duration of runoff, and the streamflow indicators occurred at dates later in the year than the years with less snowmelt runoff. Additionally, the seasonal distribution of streamflow was more strongly controlled by the change in the amount of annual discharge than by changes in streamflow over time. The variation of streamflow conditions over time at one streamflow-gaging station in the study area, Navajo River at Banded Peak Ranch, was not significantly monotonic over the period of record with a Kendall’s tau of 0.0426 and with a p-value of 0.5938 for 1937 to 2009 (a trend was considered statistically significant at a p-value ≤ 0.05). There was a relation, however, such that annual discharge was generally lower than the median during a negative Pacific Decadal Oscillation interval and higher than the median during a positive Pacific Decadal Oscillation interval. Streamflow conditions at Navajo River at Banded Peak Ranch varied nonmonotonically over time and were likely a function of complex climate pattern interactions. Similarly, the monthly distribution of streamflow varied nonmonotonically over time and was likely a function of complex climate pattern interactions that cause variation over time. Study results indicated that the median of the sum of the streamflow available above the minimum monthly bypass requirement from Rio Blanco, Little Navajo River, and Navajo River was 126,240 acre-feet. The results also indicated that diversion of water for the San Juan–Chama Project has been possible for most months of most years.

Colorado;New Mexico↗

Ground-water resources of the Oakland Park area of eastern Broward County, Florida

The Biscayne aquifer is the source of all fresh ground water in the Oakland Park area of eastern Broward County, Florida. This aquifer extends from the land surface to more than 215 feet below mean sea level and is composed chiefly of sandy marine limestone, calcareous sandstone, and beds of fine to medium quartz sand. The aquifer differs from place to place, but, in general, most of the layers of limestone and sandstone occur at depths below 60 feet. The permeability of the aquifer increases with depth.

Florida↗

Geology of the Stroudsburg quadrangle and Adjacent areas, Pennsylvania--New Jersey

The Stroudsburg area is within the Valley and Ridge and Great Valley physiographic provinces, Northampton and Monroe Counties, Pennsylvania, and Warren County, New Jersey. The northeast-trending subparallel valleys and ridges resulted from erosion of folded heterogeneous sedimentary rocks. These are Middle Ordovician to Middle Devonian in age and are more than 17,000 feet thick. Deposition of a thick flysch sequence (Martinsburg Formation of Ordovician age) accompanied onset of Taconic orogenesis. It was followed by deposition of a thick molasse sequence of Silurian and Early Devonian age (continental and marginal-marine clastics--Shawangunk Formation and Bloomsburg Red Beds--overlain by predominantly marginal-marine and subtidal limestone, dolomite, shale, and sandstone--Poxono Island Formation through Oriskany Group). Basin deepening and gradual shallowing occurred during Esopus through Mahantango deposition, heralding the Acadian clastic wedge exposed north of the Stroudsburg area. Interpretation of sedimentary structures and regional stratigraphic relations suggest that the Silurian and Devonian rocks were deposited in the following environments: A1luviated coastal plain (meandering and braided streams), tidal flats (supratidal and intertidal), barrier zone, and neritic zone (upper and lower). The rock stratigraphic units have been grouped into four lithotectonic units, each having a different style of deformation. Folds produced in these rocks are disharmonic, and it is believed that each rock sequence is set off from units above and below by decollements, or zones of detachment. Movement was northwest into the Appalachian basin, primarily by gravitational sliding. The contact between the Shawangunk Formation of Silurian age and Martinsburg Formation of Ordovician age, is one zone of detachment as well as an angular unconformity. Deformational effects of the Middle to Late Ordovician Taconic orogeny are elusive, but it appears that the folds and most minor structures, including the prominent regional cleavage, were produced during the late Paleozoic Appalachian orogeny and are superimposed upon larger Taconic folds and faults. Field relations and microscopic study suggest that the regional cleavage in the Stroudsburg area is due to laminar flow of pelitic material along cleavage folia accompanied by mechanical reorientation of platy and elongate minerals and neocrystallization of mica, quartz, chlorite, and probably albite. Numerous lines of evidence point to the conclusion that cleavage developed after the rock was indurated and formed at, and Just below, conditions of low-grade metamorphism. Intensity of cleavage development increases to the southeast across the area. Second-generation slip cleavage, also believed to be Appalachian in age, formed by mechanical reorientation of minerals as well as by limited new mineral growth. The topography had a profound effect on the direction of movement of the Wisconsin glacier, as well as the manner of its retreat and the deposits that were formed. Till and stratified drift of Wisconsin age and till of Illinoian(?) age are common in the area. Wisconsin deglaciation occurred by northeastward retreat and by stagnation. A conspicuous terminal moraine marks the limit of Wisconsin ice movement. Lake Sciota was dammed between the retreating ice, the moraine, and the surrounding ridges north of Godfrey Ridge. Several deltas mark ice stand positions during the retreat of the ice. Lake-bottom and kame deposits are locally common in Cherry Valley. South of Kittatinny Mountain, on the other hand, melt water was freely discharged to the south. The wind and water gaps in the Stroudsburg area (including Delaware Water Gap and Wind Gap) are structurally controlled; specifically they are located where folds die out in short distances, where folding is locally more intense, or where resistant rocks dip steeply and have a narrow width of outcrop. This conclusion is contrary to

Open-File Report↗

Unusually large tsunamis frequent a currently creeping part of the Aleutian megathrust

Current models used to assess earthquake and tsunami hazards are inadequate where creep dominates a subduction megathrust. Here we report geological evidence for large tsunamis, occurring on average every 300&ndash;340 years, near the source areas of the 1946 and 1957 Aleutian tsunamis. These areas bookend a postulated seismic gap over 200 km long where modern geodetic measurements indicate that the megathrust is currently creeping. At Sedanka Island, evidence for large tsunamis includes six sand sheets that blanket a lowland facing the Pacific Ocean, rise to 15 m above mean sea level, contain marine diatoms, cap terraces, adjoin evidence for scour, and date from the past 1700 years. The youngest sheet, and modern drift logs found as far as 800 m inland and >18 m elevation, likely record the 1957 tsunami. Modern creep on the megathrust coexists with previously unrecognized tsunami sources along this part of the Aleutian Subduction Zone.

Alaska↗

Offshore sand-shoal development and evolution of Petit Bois Pass, Mississippi-Alabama Barrier Islands, Mississippi, USA

Assessment of recently collected geophysical and sediment-core data identifies an extensive shoal field located off Dauphin and Petit Bois Islands. The shoals are the product of Pleistocene fluvial deposition and Holocene marine-transgressive processes, and their position and orientation oblique to the modern shoreline has been stable over the past century. The underlying stratigraphy has also influenced the evolution of the barrier platform and inlets. Buried distributary channels bisect the platform, creating erosion hotspots that breach during intense and repeated storms. Inlet growth inhibits littoral transport, and over time, reduces the down-drift sand supply. These relations demonstrate the role of the antecedent geologic framework on morphologic evolution. This study is part of the USGS Northern Gulf of Mexico Ecosystem Change and Hazard Susceptibility Project and the USACE Mississippi Coastal Improvements Program. These projects produced a wealth of information regarding coastal geology, geomorphology, and physical resources; some of the initial results are presented here.

Alabama;Mississippi↗

Invasive lionfish use a diversity of habitats in Florida

Two species of lionfish ( Pterois volitans and Pterois miles ) are the first marine fishes known to invade and establish self-sustaining populations along the eastern seaboard of the United States. First documented off the coast of Florida in 1985, lionfish are now found along the Atlantic coast of the United States as well as in the Caribbean Sea and Gulf of Mexico. Although long-term effects of this invasion are not yet fully known, there is early evidence that lionfish are negatively impacting native marine life. The lionfish invasion raises questions about which types of habitat the species will occupy in its newly invaded ecosystem. In their native range, lionfish are found primarily on coral reefs but sometimes are found in other habitats such as seagrasses and mangroves. This fact sheet documents the diversity of habitat types in which invasive lionfish have been reported within Florida’s coastal waters, based on lionfish sightings recorded in the U.S. Geological Survey Nonindigenous Aquatic Species database (USGS-NAS).

Florida↗

High-resolution geophysical data from the Inner Continental Shelf: South of Martha's Vineyard and north of Nantucket, Massachusetts

The U.S. Geological Survey and the Massachusetts Office of Coastal Zone Management have cooperated to map approximately 185 square kilometers of the inner continental shelf south of Martha’s Vineyard and north of Nantucket, Massachusetts. This report contains geophysical data collected by the U.S. Geological Survey during a survey in 2013. The geophysical data include (1) swath bathymetry collected by using interferometric sonar, (2) acoustic backscatter from the interferometric sonar, and (3) seismic-reflection profiles from a chirp subbottom profiler. These spatial data support research on the Quaternary evolution of coastal Massachusetts, the influence of sea-level change and sediment supply on coastal evolution, and efforts to understand the type, distribution, and quality of subtidal marine habitats in the coastal ocean of Massachusetts.

Massachusetts↗

Archive of digital chirp subbottom profile data collected during USGS cruise 12BIM03 offshore of the Chandeleur Islands, Louisiana, July 2012

From July 23 - 31, 2012, the U.S. Geological Survey conducted geophysical surveys to investigate the geologic controls on barrier island framework and long-term sediment transport along the oil spill mitigation sand berm constructed at the north end and just offshore of the Chandeleur Islands, La. (figure 1). This effort is part of a broader USGS study, which seeks to better understand barrier island evolution over medium time scales (months to years). This report serves as an archive of unprocessed digital chirp subbottom data, trackline maps, navigation files, Geographic Information System (GIS) files, Field Activity Collection System (FACS) logs, and formal Federal Geographic Data Committee (FGDC) metadata. Gained (showing a relative increase in signal amplitude) digital images of the seismic profiles are also provided. Refer to the Abbreviations page for expansions of acronyms and abbreviations used in this report. The USGS St. Petersburg Coastal and Marine Science Center (SPCMSC) assigns a unique identifier to each cruise or field activity. For example, 12BIM03 tells us the data were collected in 2012 during the third field activity for that project in that calendar year and BIM is a generic code, which represents efforts related to Barrier Island Mapping. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the field activity ID. All chirp systems use a signal of continuously varying frequency; the EdgeTech SB-424 system used during this survey produces high-resolution, shallow-penetration (typically less than 50 milliseconds (ms)) profile images of sub-seafloor stratigraphy. The towfish contains a transducer that transmits and receives acoustic energy and is typically towed 1 - 2 m below the sea surface. As transmitted acoustic energy intersects density boundaries, such as the seafloor or sub-surface sediment layers, energy is reflected back toward the transducer, received, and recorded by a PC-based seismic acquisition system. This process is repeated at regular time intervals (for example, 0.125 seconds (s)) and returned energy is recorded for a specific duration (for example, 50 ms). In this way, a two-dimensional (2-D) vertical image of the shallow geologic structure beneath the ship track is produced. Figure 2 displays the acquisition geometry. Refer to table 1 for a summary of acquisition parameters and table 2 for trackline statistics. The archived trace data are in standard Society of Exploration Geophysicists (SEG) SEG Y rev. 0 format (Barry and others, 1975); the first 3,200 bytes of the card image header are in ASCII format instead of EBCDIC format. The SEG Y files may be downloaded and processed with commercial or public domain software such as Seismic Unix (SU) (Cohen and Stockwell, 2010). See the How To Download SEG Y Data page for download instructions. The web version of this archive does not contain the SEG Y trace files. These files are very large and would require extremely long download times. To obtain the complete DVD archive, contact USGS Information Services at 1-888-ASK-USGS or infoservices@usgs.gov. The printable profiles provided here are GIF images that were processed and gained using SU software and can be viewed from the Profiles page or from links located on the trackline maps; refer to the Software page for links to example SU processing scripts. The SEG Y files are available on the DVD version of this report or on the Web, downloadable via the USGS Coastal and Marine Geoscience Data System (http://cmgds.marine.usgs.gov). The data are also available for viewing using GeoMapApp (http://www.geomapapp.org) and Virtual Ocean (http://www.virtualocean.org) multi-platform open source software. Detailed information about the navigation system used can be found in table 1 and the Field Activity Collection System (FACS) logs. To view the trackline maps and navigation files, and for more information about these items, see the Navigation page.

Louisiana↗

Transgressive channel filling in the Breathitt Formation (Upper Carboniferous), Eastern Kentucky Coal Field, USA

Carbonaceous shales of brackish or marine origin in the Breathitt Formation may exhibit sharp bases with local channel-form scours. Minor channels at the bases of these shales exhibit three general types of fill: (1) shale, (2) bioturbated, heterolithic strata, and (3) coal overlain by shale or bioturbated, heterolithic strata. Most of the scours at the bases of the channels were formed during a depositional hiatus that preceded transgression. Some may also have been formed by transgressive reworking of underlying estuarine and deltaic siliciclastics. The channel fills are bioturbated and may contain crudely cyclical rhythmites, subordinate and dominant siltstone-laminae couplets, wave ripples, and bimodal current ripple trends. The fills are interpreted to represent estuarine sedimentation during marine transgression. Channels are capped by sideritic, bioturbated sandstones that separate the fills from the overlying dark shales deposited under brackish- to marine-water conditions. Some of these sandstones may represent local transgressive surfaces. The occurrence of these types of channels in different parts of the coal-bearing Breathitt Formation supports the hypothesis of multiple transgressions during the Late Carboniferous in the Central Appalachian Basin.

Eastern Kentucky Coal Field↗

Paleoecology of the Springfield Coal Member (Desmoinesian, Illinois Basin) near the Leslie Cemetery paleochannel, southwestern Indiana

The Springfield Coal Member (Carbondale Group, Petersburg Formation of Indiana) is split locally in Warrick and Gibson Counties, Indiana, by clastic rocks of the Folsomville Member (Carbondale Group, Petersburg Formation) that represent the Leslie Cemetery paleochannel, part of a large, interconnected paleochannel system in the Springfield coal bed. This study incorporated analysis of miospore and megaspore assemblages, coal petrography, plant compression fossils and conodonts from the coal and clastic split to document changes in the swamp and its vegetation in response to the activity of the Leslie Cemetery paleochannel. Palynological and petrographic data indicate that environmental conditions and vegetation in the lower bench of coal near the Leslie Cemetery paleochannel were similar to those found in profiles through the coal bed at sites near the larger, more extensive Galatia paleochannel. Miospore floras of the high-vitrinite, lower bench of coal were dominated by tree-fern miospores, with those of lycopsids ranking second in abundance; megaspore assemblages were dominated by lycopsid megaspores. Near the contacy between the lower bench of coal and clastic split, medullosan prepollen increases in abundance and fusain bands are more common, which may indicate the occurrence of fire, either within or outside the swamp. Vegetation in the Folsomville Member and upper bench of coal differ markedly from that of the lower bench of coal. Plant megafossils from the Folsomville Member indicate dominance by pteridosperms and/or lycopsids and Folsomville Member miospore assemblages are dominated by lycopsid miospores most typically found in mudstones, including Lycospora torquifer and higher than normal abundances of Granasporites medius . In the transition from clastic rocks of the Folsomville Member to the upper bench of coal, miospores of ‘ecotonal’ lycopsids ( Paralycopodites ) reach their peak abundance, pteridosperms dominate megafossil assemblages and inertinite levels are relatively high. At higher levels of the upper bench of coal, vitrinite levels are higher and miospore assemblages are dominated by lycopsid miospores typical of coal swamps ( Lycospora granulata, L. pusilla ). The presence of conodonts in coalballs in the upper bench of coal and spirorbid worms in the split indicate that the paleoswamp may have received some marine or brackish water influence. Higher than normal salinity levels may explain the vegetational changes observed in the upper bench of coal near the Leslie Cemetery paleochannel.

Indiana↗

Geology of the middle Tertiary formations of Puerto Rico

Rocks of Oligocene and Miocene age crop out in both N and S Puerto Rico. They rest with angular unconformity on volcanic and related sedimentary and intrusive rocks that range in age from Early Cretaceous to M. Eocene. The older rocks crop out on the upland that extends E-W through the center of the island. The surface on which the M. Tertiary rocks were deposited is very irregular, having a local relief of at least 200m. Although the rocks of N and S Puerto Rico are approximately the same age, there was no nearby marine connection during Oligocene time; as a result, neither the lithologic characteristics nor the faunas contained in the rocks permit exact correlation from one side of Puerto Rico to the other. During Miocene time, there may have been a connection of the two seas around the W end of present-day Puerto Rico. -from Author

Puerto Rico↗

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