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Using multiple data sets to populate probabilistic volcanic event trees

The key parameters one needs to forecast outcomes of volcanic unrest are hidden kilometers beneath the Earth’s surface, and volcanic systems are so complex that there will invariably be stochastic elements in the evolution of any unrest. Fortunately, there is sufficient regularity in behaviour that some, perhaps many, eruptions can be forecast with enough certainty for populations to be evacuated and kept safe. Volcanologists charged with forecasting eruptions must try to understand each volcanic system well enough that unrest can be interpreted in terms of pre-eruptive process, but must simultaneously recognize and convey uncertainties in their assessment. We have found that use of event trees helps to focus discussion, integrate data from multiple sources, reach consensus among scientists about both pre-eruptive process and uncertainties and, in some cases, to explain all of this to officials. Figure 1 shows a generic volcanic event tree from Newhall and Hoblitt (2002) that can be modified as needed for each specific volcano. This paper reviews how we and our colleagues have used such trees during a number of volcanic crises worldwide, for rapid hazard assessments in situations in which more formal expert elicitations could not be conducted. We describe how Multiple Data Sets can be used to estimate probabilities at each node and branch. We also present case histories of probability estimation during crises, how the estimates were used by public officials, and some suggestions for future improvements.

Book chapter↗

Hormonal control of euryhalinity

Hormones play a critical role in maintaining body fluid balance in euryhaline fishes during changes in environmental salinity. The neuroendocrine axis senses osmotic and ionic changes, then signals and coordinates tissue-specific responses to regulate water and ion fluxes. Rapid-acting hormones, e.g. angiotensins, cope with immediate challenges by controlling drinking rate and the activity of ion transporters in the gill, gut, and kidney. Slow-acting hormones, e.g. prolactin and growth hormone/insulin-like growth factor-1, reorganize the body for long-term acclimation by altering the abundance of ion transporters and through cell proliferation and differentiation of ionocytes and other osmoregulatory cells. Euryhaline species exist in all groups of fish, including cyclostomes, and cartilaginous and teleost fishes. The diverse strategies for responding to changes in salinity have led to differential regulation and tissue-specific effects of hormones. Combining traditional physiological approaches with genomic, transcriptomic, and proteomic analyses will elucidate the patterns and diversity of the endocrine control of euryhalinity.

Book chapter↗

Freshwater to seawater transitions in migratory fishes

The transition from freshwater to seawater is integral to the life history of many fishes. Diverse migratory fishes express anadromous, catadromous, and amphidromous life histories, while others make incomplete transits between freshwater and seawater. The physiological mechanisms of osmoregulation are widely conserved among phylogenetically diverse species. Diadromous fishes moving between freshwater and seawater develop osmoregulatory mechanisms for different environmental salinities. Freshwater to seawater transition involves hormonally mediated changes in gill ionocytes and the transport proteins associated with hypoosmoregulation, increased seawater ingestion and water absorption in the intestine, and reduced urinary water losses. Fishes attain salinity tolerance through early development, gradual acclimation, or environmentally or developmentally cued adaptations. This chapter describes adaptations in diverse taxa and the effects of salinity on growth. Identifying common strategies in diadromous fishes moving between freshwater and seawater will reveal the ecological and physiological basis for maintaining homeostasis in different salinities, and inform efforts to conserve and manage migratory euryhaline fishes.

Book chapter↗

Euryhalinity in an evolutionary context

This chapter focuses on the evolutionary importance and taxonomic distribution of euryhalinity. Euryhalinity refers to broad halotolerance and broad halohabitat distribution. Salinity exposure experiments have demonstrated that species vary tenfold in their range of tolerable salinity levels, primarily because of differences in upper limits. Halotolerance breadth varies with the species&rsquo; evolutionary history, as represented by its ordinal classification, and with the species&rsquo; halohabitat. Freshwater and seawater species tolerate brackish water; their empirically-determined fundamental haloniche is broader than their realized haloniche, as revealed by the halohabitats they occupy. With respect to halohabitat distribution, a minority of species (<10%) are euryhaline. Habitat-euryhalinity is prevalent among basal actinopterygian fishes, is largely absent from orders arising from intermediate nodes, and reappears in the most derived taxa. There is pronounced family-level variability in the tendency to be halohabitat-euryhaline, which may have arisen during a burst of diversification following the Cretaceous-Palaeogene extinction. Low prevalence notwithstanding, euryhaline species are potent sources of evolutionary diversity. Euryhalinity is regarded as a key innovation trait whose evolution enables exploitation of new adaptive zone, triggering cladogenesis. We review phylogenetically-informed studies that demonstrate freshwater species diversifying from euryhaline ancestors through processes such as landlocking. These studies indicate that some euryhaline taxa are particularly susceptible to changes in halohabitat and subsequent diversification, and some geographic regions have been hotspots for transitions to freshwater. Comparative studies on mechanisms among multiple taxa and at multiple levels of biological integration are needed to clarify evolutionary pathways to, and from, euryhalinity.

Book chapter↗

Response of northern San Francisco Bay to riverine inputs of dissolved inorganic carbon, silicon, nitrogen and phosphorus

Estuarine processes can be effective in modifying (filtering) distributions of dissolved inorganic forms of carbon (DIC), silicon (DIS), nitrogen (DIN), and phosphorus (DIP) in northern San Francisco Bay. During winter, high inflow from the Sacramento-San Joaquin river system supplied these nutrients to the estuary at rates that exceeded potential rates of estuarine supply and removal processes. During spring and summer, when inflow rates were lower, the estuary was an effective &ldquo;filter&rdquo; of the river inflow &ldquo;signal&rdquo; because rates of estuarine processes were high relative to river and other supply rates. At lower inflow rates, the river apparently influenced estuarine hydrodynamic features that controlled rates of phytoplankton nutrient removal. Largest biological removal effects were localized in San Pablo Bay during spring and Suisun Bay during summer, and they were generally more pronounced in shallow water areas of the bays. In San Pablo Bay, effects of biological removal appeared soon after river inflow decreased from high winter rates, but persisted for only a short time. During the following summer months, DIN and DIP distributions in San Pablo Bay indicated that estuarine sources contributed to higher concentrations of these nutrients.

California↗

Hydrologic exchange flows and their ecological consequences in river corridors

The actively flowing waters of streams and rivers remain in close contact with surrounding off-channel and subsurface environments. These hydrologic linkages between relatively fast flowing channel waters, with more slowly flowing waters off-channel and in the subsurface, are collectively referred to as hydrologic exchange flows (HEFs). HEFs include surface exchange with a channel’s marginal areas and subsurface flow through the streambed (hyporheic flow), as well as storm-driven bank storage and overbank flows onto floodplains. HEFs are important, not only for storing water and attenuating flood peaks, but also for their role in influencing water conservation, water quality improvement, and related outcomes for ecological values and services of aquatic ecosystems. Biogeochemical opportunities for chemical transformations are increased by HEFs as a result of the prolonged contact between flowing waters and geochemically and microbially active surfaces of sediments and vegetation. Chemical processing is intensified and water quality is often improved by removal of excess nutrients, metals, and organic contaminants from flowing waters. HEFs also are important regulators of organic matter decomposition, nutrient recycling, and stream metabolism that helps establish a balanced and resilient aquatic food web. The shallow and protected storage zones associated with HEFs support nursery and feeding areas for aquatic organisms that sustain aquatic biological diversity. Understanding of these varied roles for HEFs has been driven by the related disciplines of stream ecology, fluvial geomorphology, surface-water hydraulics, and groundwater hydrology. A current research emphasis is on the role that HEFs play in altered flow regimes, including restoration to achieve diverse goals, such as expanding aquatic habitats and managing dissolved and suspended river loads to reduce over-fertilization of coastal waters and offset wetland loss. New integrative concepts and models are emerging (eg, hydrologic connectivity) that emphasize HEF functions in river corridors over a wide range of spatial and temporal scales.

Book chapter↗

Occupancy in community-level studies

Another type of multi-species studies, are those focused on community-level metrics such as species richness. In this chapter we detail how some of the single-species occupancy models described in earlier chapters have been applied, or extended, for use in such studies, while accounting for imperfect detection. We highlight how Bayesian methods using MCMC are particularly useful in such settings to easily calculate relevant community-level summaries based on presence/absence data. These modeling approaches can be used to assess richness at a single point in time, or to investigate changes in the species pool over time.

Book chapter↗

Crusts: biological

Biological soil crusts, a community of cyanobacteria, lichens, mosses, and fungi, are an essential part of dryland ecosystems. They are critical in the stabilization of soils, protecting them from wind and water erosion. Similarly, these soil surface communities also stabilized soils on early Earth, allowing vascular plants to establish. They contribute nitrogen and carbon to otherwise relatively infertile dryland soils, and have a strong influence on hydrologic cycles. Their presence can also influence vascular plant establishment and nutrition.

Book chapter↗

Conservation issues: California chaparral

California chaparral, a sclerophyllous shrub-dominated plant community shaped by a Mediterranean-type climate and infrequent, high-intensity fire, is one of the most biodiverse and threatened habitats on Earth. Distinct forms of chaparral, distinguished by differing species composition, geography, and edaphic characteristics, can cover thousands of hectares with dense vegetation or be restricted to smaller communities identified by the presence of endemic species. To maintain the biodiversity of chaparral, protective land management actions will be required to mitigate the loss due to the impacts of human population growth, development, climate change, and increased fire frequencies.

Book chapter↗

Human footprint affects US carbon balance more than climate change

The MC2 model projects an overall increase in carbon capture in conterminous United States during the 21st century while also simulating a rise in fire causing much carbon loss. Carbon sequestration in soils is critical to prevent carbon losses from future disturbances, and we show that natural ecosystems store more carbon belowground than managed systems do. Natural and human-caused disturbances affect soil processes that shape ecosystem recovery and competitive interactions between native, exotics, and climate refugees. Tomorrow's carbon budgets will depend on how land use, natural disturbances, and climate variability will interact and affect the balance between carbon capture and release.

Book chapter↗

Genetic responses to rapid change in the environment during the anthropocene

Humans have greatly affected the genetic composition of many different organisms during the Anthropocene. Humans cause genetic changes by affecting the direction and magnitude of evolutionary forces that act to create the Earth's biota. In many cases, we expect the outcome of human actions to be extinction and hybridization of existing species, but other outcomes, such as adaptation, also occur. Given the reach of humans throughout the globe, and recent biotechnology advances that make it possible to move individual genes between species or to remove them, it is likely that human influence on the genetic composition of other organisms will become even more widespread as the Anthropocene progresses.

Book chapter↗

Monitoring volcanic deformation

Whereas research in volcano geodesy seeks to push the boundaries of our knowledge of the physics of volcanoes, monitoring looks at changes in volcano behavior to predict when a volcanic crisis might develop. To be effective, geodetic monitoring must be done before, during, and after eruptions and must be integrated with other monitoring techniques . It requires the type of long-term commitment of time and resources that academic and industry scientists generally cannot make. A few, well-placed geodetic monitoring stations can make a huge difference to a country's ability to alert its people to an imminent volcanic eruption . Monitoring strategies vary greatly depending on several factors such as the activity of the individual volcano, access, and available personnel and funding. Rapid advances in technology allow for more precise geodetic monitoring today than was imaginable when many of the existing volcano observatories were established. Today, deformation measurements at active volcanoes are usually made with continuous Global Positioning System (CGPS) stations, supplemented by Interferometric Synthetic Aperture Radar (InSAR) images. Neither method requires a continuous presence of personnel in the field, except for the installation and maintenance of the GPS stations; however subsequent data analysis can be highly complex.

Book chapter↗

Ecological health indicators

Contemporary policymakers rarely stress ecological knowledge, and yet this knowledge remains crucial—just as it was in prehistory—to protecting overall human well-being. Measuring carefully selected ecological health indicators—that is, signs or symptoms, especially those focused on biotic assemblages—can provide insights into the ecological condition of a place and the variety of ecological consequences of proposed or present human actions there. In turn, measured ecological conditions may be judged as acceptable (healthy) or unacceptable (unhealthy), depending on prevailing value systems and societal goals. Ecological health indicators characterize the ecological conditions of where we live; improve scientific understanding of ecosystems and the benefits they provide; diagnose causes of ecological degradation; communicate scientific knowledge to nontechnical audiences; guide environmental policy; and measure progress toward societal goals. By helping to identify who benefits and who suffers from societal choices, ecological health indicators inform our choices about how to use or protect ecosystems and their living components, including human society itself.

Book chapter↗

Invasive plant species

Invasive species may be one of the worts environmental problems facing the conservation of natural areas, because of their role in changing ecosystem function. At the same time, invasive species cause much human suffering and economic loss. The approach to eliminating invasive species can be improved by a better understanding of the various types of invasive species, and the scientific hypotheses surrounding their ability to invade novel environments. Despite the billions of dollars spent each year, invasive species are difficult if not impossible to eliminate after they have established. Various methods of eliminating plant species from natural communities are described in this review. An increased understanding of the nature of invasive species including their genetic relationship to their progenitors, hypotheses regarding their invasive qualities, and effective approaches for their removal from ecosystems are all sorely needed. Volunteers can help in the invasive species effort by working on local plant/animal removal projects, reporting invasive species sightings to appropriate officials, or working with scientists to collect basic data for ecological research.

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Lotic freshwater: Rivers

Ecosystems associated with rivers are intricately connected to their entire watershed. The river ecosystem includes the channel of active water flow, floodplain, and riparian and hyporheic zones. This ecosystem is shaped by interactions among the natural flow of water, sediments within the river and entering the river, and large wood regimes within the riparian zone. River integrity describes the ability of a river ecosystem to adjust to changes in these elements and through these adjustments maintain the habitat, disturbance regime, and connectivity necessary to sustain native biotic communities. Riverine food webs conceptualize the coupling between the physical environment and biotic communities and can be used to examine recovery from disturbance, variation in the structure of communities, and sources of energy that fuel metabolism within the ecosystem.

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Contemporary human impacts on alpine ecosystems: the direct and indirect effects of human-induced climate change and land use

Alpine ecosystems account for ca. 3 % of terrestrial habitats yet, along with adjacent mountain systems, provide water resources to nearly half of the world’s human population. Approximately 20 % of humans live in or near mountain areas, making it inherently important to understand current impacts on these systems. Here, I review literature regarding current and projected human impacts on alpine ecosystems, including the direct and indirect impacts of human-induced climate change on alpine plant, animal, and soil communities. I also discuss the influence of recreation and tourism, grazing, and other land use changes including the introduction of non-native and invasive species in alpine systems. I conclude with management implications as well as future areas of research needed to better understand changes to these systems.

Book chapter↗

Soils and paleosols

Soils are naturally occurring bodies that form in the interface between the geosphere, biosphere, hydrosphere , and atmosphere. They are the medium for much of the Earth's plant and animal growth. Soil morphology and how it evolves are functions of the soil-forming factors of climate, organisms, relief, parent material, and time. The expression of soil morphology takes the form of layers, called horizons, that differ in their color, particle size distribution, structure, chemistry, and organic matter content from the parent material. A fundamental soil mapping unit in the USA is the soil order and 12 soil orders have been defined on the basis of soil morphology, physical and chemical properties, and climate. Soil geography in the USA is explained by an examination of how these 12 soil orders are found in particular climates, under specific vegetation communities, how they develop from compositionally distinct parent materials, or how they are a result of the age of soil parent material. Paleosols are ancient soils, those that formed in the past. Three types of paleosols are recognized, buried soils (those covered by a younger sediment or rock), exhumed paleosols (formerly buried soils that are now exposed at the surface due to erosion of overlying materials), and relict paleosols (soils that occur at the land surface, but which formed in an environment, such as a climate or biome, very different from that at the present time). Paleosols can help define geologic contacts and can aid in elucidating past climates or vegetation regimes. Although there are rich geologic records of paleosols in the Quaternary, there is an increasing recognition of the importance of all these features in the longer, pre-Quaternary geologic record.

Book chapter↗

Conservation of temporary wetlands

Temporary wetlands are characterized by frequent drying resulting in a unique, highly specialized assemblage of often rare or specialized plant and animal species. They are found on all continents and in a variety of landscape settings. Although accurate estimates of the abundance of temporary wetlands are available in only a few countries, global estimations identify a decline in number and quality. The key environmental factors driving the structure of ecological communities in temporary wetlands are the duration, timing, frequency and predictability of the aquatic and dry phases, which varies greatly with region and hydrogeomorphic setting. Temporary wetlands have been historically neglected, but improved social awareness of the functions and values of, and increases in scientific interest, suggest that this is changing. They play an ecological role in both global cycles (i.e., CO 2 emissions) and biodiversity (in proportion to their size, they contribute disproportionately to regional and global biodiversity). Moreover, they provide valuable ecosystem services including wildlife habitat, nutrient flux to adjacent ecosystems, flood control, water filtration, and cultural services. Effective conservation of temporary wetlands requires addressing threats (i.e., inconsistent and inadequate regulatory protections; climate change; changes in land use) and management challenges (i.e., management at both local and landscape scales; incomplete understanding of the ecosystem services provided by them; the need to enhance inventories). The most suitable approaches for conserving temporary wetlands include (1) regulations or other forms of protection; (2) sustainable management; (3) restoration and creation; and (4) collaborative conservation.

Book chapter↗

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