USGS Science⌕ Search

USGS · ofr20091193

Near-field receiving water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California: 2008

Abstract

Results reported herein include trace element concentrations in sediment and in the clam Macoma petalum (formerly reported as Macoma balthica (Cohen and Carlton, 1995)), clam reproductive activity, and benthic macroinvertebrate community structure for a mudflat one kilometer south of the discharge of the Palo Alto Regional Water Quality Control Plant (PARWQCP) in South San Francisco Bay. This report includes data collected for the period January 2008 to December 2008 and extends a critical long-term biogeochemical record dating back to 1974. These data serve as the basis for the City of Palo Alto's Near-Field Receiving Water Monitoring Program, initiated in 1994. In 2008, metal concentrations in both sediments and clam tissue were among the lowest concentrations on record and consistent with results observed since 1991. Following significant reductions in the late 1980's, silver (Ag) and copper (Cu) concentrations appeared to have stabilized. Annual mean concentrations have fluctuated modestly (2–4 fold) in a nondirectional manner. Data for other metals, including chromium, mercury, nickel, selenium, vanadium, and zinc, have been collected since 1994. Over this period, concentrations of these elements, which more likely reflect regional inputs and systemwide processes, have remained relatively constant, aside from typical seasonal variation that is common to all elements. Within years, concentrations generally reach maximum in winter months (January–March) and decline to annual minima in spring through fall. Mercury (Hg) in sediments spiked to the highest observed level in January 2008. However, sedimentary concentrations for the rest of the year and concentrations of Hg in M. petalum for the entire year were consistent with data from previous years. Average selenium (Se) concentrations in sediment were the highest on record, but there is no evidence, yet, to suggest a temporal trend of increasing sedimentary Se. Selenium in M. petalum was not elevated relative to past years. Overall, Cu and Ag concentrations in sediments and soft tissues of the clam, M. petalum , remained representative of the concentrations observed since 1991 following significant reductions in the discharge of these elements from PARWQCP, suggesting that, similar to other elements of regulatory interest, regional scale factors now largely influence sedimentary and bioavailable concentrations of Cu and Ag. Analyses of the benthic-community structure of a mudflat in South San Francisco Bay over a 31-year period show that changes in the community have occurred concurrent with reduced concentrations of metals in the sediment and in the tissues of the biosentinel clam, M. petalum , from the same area. Analysis of the reproductive activity of M. petalum shows increases in reproductive activity concurrent with the decline in metal concentrations in the tissues of this organism. Reproductive activity is presently stable, with almost all animals initiating reproduction in the fall and spawning the following spring of most years. The community has shifted from being dominated by several opportunistic species to a community where the species are more similar in abundance, a pattern that suggests a more stable community that is subjected to less stress. In addition, two of the opportunistic species ( Ampelisca abdita and Streblospio benedicti ) that brood their young and live on the surface of the sediment in tubes, have shown a continual decline in dominance coincident with the decline in metals. Heteromastus filiformis , a subsurface polychaete worm that lives in the sediment, consumes sediment and organic particles residing in the sediment, and reproduces by laying their eggs on or in the sediment, has shown a concurrent increase in dominance and is now showing signs of population stability. An unidentified disturbance occurred on the mudflat in early 2008 that resulted in the loss of the benthic animals, except for those deep dwelling animals like Macoma petalum . Animals immediately returned to the mudflat, which is indicative that the disturbance was not due to a persistent toxin or due to anoxia. This event allows us to examine the response of the mudflat benthic community to a natural disturbance (possible causes include sediment accretion or freshwater inundation) and compare this recovery to the longer term recovery we observed in the 1970s.

Explore related subjects

90° N90° S · 180° W ← longitude → 180° E
Source-reported bounding extent: 37.45564662685196° to 37.459734584562185° latitude; -122.10286617279053° to -122.09973335266112° longitude. This indicates report coverage, not an exact sampling location. View area on OpenStreetMap.

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Daniel J. Cain, Janet K. Thompson, Jessica Dyke, Francis Parcheso, Samuel N. Luoma, Michelle I. Hornberger. 2009. Near-field receiving water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California: 2008. https://doi.org/10.3133/ofr20091193

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related USGS reports

ECCOE Landsat quarterly calibration and validation report—Quarter 2, 2026

Executive Summary The U.S. Geological Survey Earth Resources Observation and Science Calibration and Validation (Cal/Val) Center of Excellence (ECCOE) focuses on improving the accuracy, precision, calibration, and product quality of remote-sensing data, leveraging years of multiscale optical system geometric and radiometric calibration and characterization experience. The ECCOE Landsat Cal/Val Team continually monitors the geometric and radiometric performance of active Landsat missions and makes calibration adjustments, as needed, to maintain data quality at the highest level. This report provides observed geometric and radiometric analysis results for Landsats 8 and 9 for quarter 2 (April–June), 2026. All data used to compile the Cal/Val analysis results presented in this report are freely available from the U.S. Geological Survey EarthExplorer website: https://earthexplorer.usgs.gov.

Open-File Report↗

ECCOE Landsat quarterly calibration and validation report—Quarter 1, 2026

Executive Summary The U.S. Geological Survey Earth Resources Observation and Science Calibration and Validation (Cal/Val) Center of Excellence (ECCOE) focuses on improving the accuracy, precision, calibration, and product quality of remote-sensing data, leveraging years of multiscale optical system geometric and radiometric calibration and characterization experience. The ECCOE Landsat Cal/Val Team continually monitors the geometric and radiometric performance of active Landsat missions and makes calibration adjustments, as needed, to maintain data quality at the highest level. This report provides observed geometric and radiometric analysis results for Landsats 8 and 9 for quarter 1 (January–March) of 2026. All data used to compile the Cal/Val analysis results presented in this report are freely available from the U.S. Geological Survey EarthExplorer website: https://earthexplorer.usgs.gov . One specific activity that the ECCOE Landsat Cal/Val Team closely monitored was a Landsat 8 Thermal Infrared Sensor encoder alerts anomaly. On March 18, 2026, the Thermal Infrared Sensor instrument’s mechanism control electronics board reset, driving several parameters to default power-on values. Subsequent telemetry and analysis determined that no persistent hardware misconfiguration was present and no radiometric or geometric degradation was observed.

Open-File Report↗

Floods of June 20–July 6, 2024, in the Big Sioux River, Rock River, Little Sioux River, Ocheyedan River, and Floyd River Basins, northwestern Iowa

Major flooding occurred on June 20–July 6, 2024, in northwestern Iowa affecting the Big Sioux, Rock, Little Sioux, Ocheyedan, and Floyd River Basins. Heavy rain fell in northwestern Iowa, southwestern Minnesota, and southeastern South Dakota on June 20–22, 2024. Parts of northwestern Iowa recorded 2–6 inches of rainfall and localized amounts exceeding 12 inches. A maximum peak-of-record streamflow of 175,000 cubic feet per second at the U.S. Geological Survey streamgage Big Sioux River at Akron, Iowa (06485500), was recorded on June 22, 2024, and had an annual exceedance probability range of 0.2–0.49 percent. High-water marks were measured at four locations along the Big Sioux River between U.S. Interstate 29 at Sioux City, Iowa, upstream to Iowa Highway 10 north of Hawarden, Iowa, a distance of 75.7 river miles. A maximum peak-of-record streamflow of 157,000 cubic feet per second at the U.S. Geological Survey streamgage Rock River near Rock Valley, Iowa (06483500), was recorded on June 22, 2024, and had an annual exceedance probability of less than 0.2 percent. High-water marks were measured at eight locations along the Rock River between County Road B30 east of Hudson, South Dakota, upstream to Iowa Highway 9 at Rock Rapids, Iowa, a distance of 39.3 river miles. A maximum peak-of-record streamflow of 63,000 cubic feet per second at the U.S. Geological Survey streamgage Little Sioux River at Correctionville, Iowa (06606600), was recorded on June 24, 2024, and had an annual exceedance probability range of 0.2–0.49 percent. High-water marks were measured at 11 locations along the Little Sioux River between Iowa Highway 31 west of Correctionville, Iowa, upstream to U.S. Highway 18 north of Spencer, Iowa, a distance of 134.8 river miles. A maximum streamflow of 24,500 cubic feet per second at the U.S. Geological Survey streamgage Ocheyedan River near Spencer, Iowa (06605000), was recorded on June 22, 2024, and had an annual exceedance probability range of 0.2–0.49 percent. High-water marks were measured at three locations along the Ocheyedan River between County Road M38 west of Spencer, Iowa, upstream to U.S. Highway 18 west of Everly, Iowa, a distance of 12.8 river miles. A maximum streamflow of 41,000 cubic feet per second at the U.S. Geological Survey streamgage Floyd River at Alton, Iowa (06600100), was recorded on June 22, 2024, and had an annual exceedance probability range of 1–1.99 percent. High-water marks were measured at six locations along the Floyd River between Iowa Highway 3 at Le Mars, Iowa, upstream to Iowa Highway 10 at Alton, Iowa, a distance of 27.5 river miles. The high-water marks were used to develop flood profiles for the Big Sioux, Rock, Little Sioux, Ocheyedan, and Floyd Rivers.

Iowa, Minnesota, South Dakota↗