Metabarcoding analysis of meiobenthic biodiversity along the Gulf of Mexico continental shelf

Pamela M. Brannock; Amanda J. Demopoulos; Stephen C. Landers; Damien S. Waits; Kenneth M. Halanych

doi:10.1016/j.ecss.2023.108303

Home/Archive/USGS

USGS · 70247698

Metabarcoding analysis of meiobenthic biodiversity along the Gulf of Mexico continental shelf

Pamela M. Brannock·Amanda J. Demopoulos·Stephen C. Landers·Damien S. Waits·Kenneth M. Halanych

View original source ↗Export metadata ↓

Abstract

This study explores how diverse the meiobenthic (meiofauna and other benthic micro-eukaryotes) community is throughout the United States Gulf of Mexico (GOM) continental shelf. In late 2010 and 2011, 51 sediment samples were collected along GOM from Texas through Florida at a range of depths (40m–496m). An additional six deep-sea slope sediment cores were collected in December 2010 near the Deepwater Horizon platform (1370–1385m and 1865m). Metabarcoding of the 18S hypervariable V9 region was conducted to assess biodiversity. Within continental shelf samples, there was greater meiobenthic diversity off the Eastern GOM coast in comparison to both Central and Western GOM coast locations. The Eastern GOM coast has known sediment differences from Western GOM sites. These sediment differences along with influences from the Gulf of Mexico Loop Current may account for observed variations in GOM meiobenthic diversity.

Explore related subjects

Estuarine, Coastal and Shelf Science Article

Source-reported bounding extent: 24.02363974069364° to 30.203483534805827° latitude; -97.18084541150141° to -81.0454668578711° longitude. This indicates report coverage, not an exact sampling location. View area on OpenStreetMap.

Keep this discovery

Explore connections, maps & timelines

BibTeX RIS

Pamela M. Brannock, Amanda J. Demopoulos, Stephen C. Landers, Damien S. Waits, Kenneth M. Halanych. 2023. Metabarcoding analysis of meiobenthic biodiversity along the Gulf of Mexico continental shelf. https://doi.org/10.1016/j.ecss.2023.108303

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related USGS reports

USGS2026

Waves, watersheds, and sediment in a coral reef embayment: Towards parsimonious models of accumulation and composition

High sedimentation rates can damage coral reef ecosystems. Sedimentation rates are controlled by both sediment loads from watersheds and resuspension by waves and associated circulation patterns, but the outcomes are system specific and difficult to predict. The percent terrigenous (non-organic and non-carbonaceous) material in sediment is also often used as an indicator of watershed influence, but its dynamics are poorly understood. Sediment accumulation rates, particle size, and percent terrigenous were monitored quasi-monthly for one year (March 2014-April 2015) at nine sites in a coral reef-fringed embayment in American Samoa, where an aggregate quarry had increased sediment loads to the coast but mitigation reduced loads during the monitored period. Gross and net sediment accumulation rates were measured using sediment traps and SedPods (pods), respectively. Gross accumulation rates exceeded thresholds for impacts on coral health during at least one collection period at most sites, with more exceedances on the northern reef where water residence times and sediment availability are higher and corals show signs of sediment stress. Percent terrigenous of coarse sediment was higher in the traps and pods compared with the surrounding benthic sediment, indicating that some of the terrigenous sediment was advected through the bay without accumulating on the reef. The 95th percentile of hourly wave energy density ( E 95 ) taken from a global wave model (WaveWatch 3) was the best predictor of gross accumulation rates of both total and carbonate sediment in a log-log regression at most ( n = 6) sites ( R 2 range 0.72-0.92), indicating a strong role of resuspension of benthic sediment. Gross accumulation rates of terrigenous sediment were not correlated with E 95 and only correlated with SSY at the site nearest the stream mouth, indicating that most terrigenous sediment was not from resuspended benthic material but rather from a consistent watershed source. Percent terrigenous decreased with increasing wave energy due to high accumulation rates of carbonates during periods of high wave energy. Detection of the impact of sediment mitigation at the quarry on sediment accumulation was complicated by low wave energy in the period following mitigation. The use of gross accumulation rates and percent terrigenous as indicators of the magnitude and sources of sediment accumulation over time needs to account for wave-induced resuspension, which can be modelled with a simple power function using inputs from a global wave model.

Estuarine, Coastal and Shelf Science↗

USGS2026

Changes in suspended sediment concentration along tidal rivers of the Chesapeake Bay: The tidal freshwater “sediment shadow”

Transport of terrigenic sediment from nontidal watersheds into estuaries has important impacts on coastal habitat quality, pollutant transport, and resilience to sea-level rise. However, relatively little is known about changes in suspended sediment as nontidal rivers encounter tide, transition into tidal rivers through the tidal freshwater zone (TFZ), and enter saline portions of estuaries. The goal of this paper is to identify spatial and temporal patterns in suspended sediment concentration (SS) changes across tidal and salinity gradients over multiple tidal rivers, using a robust monitoring long-term dataset from the Chesapeake Bay. The multiple TFZs in the Chesapeake Bay consistently have a “sediment shadow” shown by a local spatial minimum in SS compared to upstream nontidal and downgradient oligohaline river reaches. Similarly, freshwater inputs from nontidal rivers have diminishing influence on tidal SS temporal dynamics with distance downstream from the head-of-tide. Therefore, little of the contemporary watershed sediment load is likely transported past the TFZ except during extreme floods when some sediment may be delivered to saline portions of the estuary. Tidal freshwater and brackish portions of the estuary have spatially variable trends in SS over time, both increases and decreases. However, the more saline downstream ends of tidal rivers and the mainstem of the Chesapeake Bay have had a consistent average 25% decline in SS over the past decades. In summary, the presence of “sediment shadows” suggests watershed loads of sediment are currently mostly not transported through the TFZ into the saline estuary, and likely generate sediment deficits for tidal freshwater wetlands.

Delaware, Maryland, Pennsylvania↗

USGS2026

Vulnerability of mangrove resources to sea-level rise on Sanibel Island, Florida, USA

Accelerating sea-level rise (SLR) is poised to reshape coastal environments over the coming decades, providing a challenge to land managers who need actionable information. Mangroves have an innate ability to keep pace with some SLR but may drown under the higher rates projected by the end of the century. Understanding local mangrove resilience to SLR requires understanding of historic and contemporary accretion rates, productivity, and forest elevations relative to tidal inundation. We applied the WARMER3 modeling framework to assess future mangrove resilience to SLR and blue carbon storage across the “Ding” Darling National Wildlife Refuge on Sanibel Island in southwest Florida, USA. We found that Sanibel mangroves are sensitive to the SLR scenario, with projected losses ranging from 19 to 70% by 2100. Across SLR scenarios, projected areal extent was similar until about 2035 and then diverge, coincident with projected acceleration in the rate of SLR. Threshold analysis indicates found that Sanibel mangroves are likely to submerge when rates exceed 6.5 mm yr −1 . Currently, the mangrove forest of our study domain holds an estimated 214,000 Mg of carbon but is likely to decrease as mangroves convert to open water in the second half of this century. For “Ding” Darling, these site-specific projections identify when losses in mangrove resources are most likely, providing a basis to prioritize local management actions and conservation resources.

Florida↗