USGS ScienceSearch

USGS · 70148554

Computational fluid dynamics-habitat suitability index (CFD-HSI) modelling as an exploratory tool for assessing passability of riverine migratory challenge zones for fish

Abstract

We developed two-dimensional computational fluid hydraulics-habitat suitability index (CFD-HSI) models to identify and qualitatively assess potential zones of shallow water depth and high water velocity that may present passage challenges for five major anadromous fish species in a 2.63-km reach of the main stem Penobscot River, Maine, as a result of a dam removal downstream of the reach. Suitability parameters were based on distribution of fish lengths and body depths and transformed to cruising, maximum sustained and sprint swimming speeds. Zones of potential depth and velocity challenges were calculated based on the hydraulic models; ability of fish to pass a challenge zone was based on the percent of river channel that the contiguous zone spanned and its maximum along-current length. Three river flows (low: 99.1 m 3 sec -1 ; normal: 344.9 m 3 sec -1 ; and high: 792.9 m 3 sec -1 ) were modelled to simulate existing hydraulic conditions and hydraulic conditions simulating removal of a dam at the downstream boundary of the reach. Potential depth challenge zones were nonexistent for all low-flow simulations of existing conditions for deeper-bodied fishes. Increasing flows for existing conditions and removal of the dam under all flow conditions increased the number and size of potential velocity challenge zones, with the effects of zones being more pronounced for smaller species. The two-dimensional CFD-HSI model has utility in demonstrating gross effects of flow and hydraulic alteration, but may not be as precise a predictive tool as a three-dimensional model. Passability of the potential challenge zones cannot be precisely quantified for two-dimensional or three-dimensional models due to untested assumptions and incomplete data on fish swimming performance and behaviours.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Alexander J. Haro, Michael Chelminski, Robert W. Dudley. 2015-06-08. Computational fluid dynamics-habitat suitability index (CFD-HSI) modelling as an exploratory tool for assessing passability of riverine migratory challenge zones for fish. https://doi.org/10.1002/rra.2911

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related USGS reports

Non-physical barrier design and environmental conditions alter routing and survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Sacramento-San Joaquin River Delta

Pacific salmon face substantial challenges when migrating through anthropogenically modified river systems, such as the Sacramento-San Joaquin River Delta (the Delta). Non-physical behavioral barriers, such as the bioacoustic fish fence (BAFF), are one potential solution for guiding fish away from hazards without obstructing water flow. However, the effectiveness of these technologies depends on abiotic and biotic conditions. In the Delta, a BAFF was deployed at Georgiana Slough in 2011, 2012, and 2024 to deter juvenile Chinook salmon ( Oncorhynchus tshawytscha ) from migrating into the interior Delta, a region associated with lower survival than the mainstem Sacramento River. We leveraged nine years of acoustic telemetry data to evaluate BAFF performance across flow conditions and two BAFF designs (2011/2012 vs. 2024), and to assess the BAFF's contribution to improving through-Delta survival. The BAFF reduced routing into Georgiana Slough from 26.5% without a barrier to 8.9% in 2011/2012 and 15.9% in 2024. In general, routing into Georgiana Slough increased with the proportion of flow entering the channel during periods without a BAFF and during the 2024 deployment but remained constant during the 2011/2012 deployment. Additionally, BAFF effectiveness declined with increasing input flow. Ultimately, reduced routing into Georgiana Slough during the 2024 BAFF deployment resulted in an increase in estimated through-Delta survival between 0.2 and 1.6 percentage points depending on release group. Our results provide valuable insights into the role of non-physical barriers in complex river systems and inform future management strategies for protecting migrating juvenile Chinook salmon in the Sacramento-San Joaquin River Delta.

California

Population dynamics of Northern Pearl Dace Margariscus nachtriebi in anthropogenically altered headwater streams of the Nebraska Sandhills Ecoregion

Empirical evidence of population demographic responses to environmental perturbations is a major knowledge gap for aquatic vertebrate populations. Extensive habitat alteration including channelization of headwater streams influences the habitat template on which small-bodied fish are dependent to carry out distinct life stages and maintain or increase population growth. The objectives of this study were to (1) determine differences in geomorphic characteristics, and instream habitat (i.e., mesohabitat availability, water depth, and macrophyte coverage) in channelized and unchannelized stream sites, and (2) estimate survival of Northern Pearl Dace Margariscus nachtriebi in channelized and unchannelized stream sites. A capture-mark-recapture robust design study was conducted where a total of 1994 Northern Pearl Dace were double tagged and 853 were recaptured over the 374-day field study. Geomorphic characteristics and instream habitat in channelized and unchannelized stream sites differed (Pillai's Trace = 0.950, F (8, 6) = 14.228, p = 0.002). Specifically, mean sinuosity index ( F (1, 13) = 20.723, p = 0.0005) and the percentage of pool mesohabitat ( F (1, 13) = 4.929, p = 0.045) were both reduced in channelized versus unchannelized stream sites. Northern Pearl Dace seasonal survival was lower in channelized sites (Ŝ Spring to Summer = 0.34; SE = 0.06) compared to unchannelized sites (Ŝ Spring to Summer = 0.93; SE = 0.03) during spring to summer. Annual survival differed between channelized sites (Ŝ = 0.001; SE = 0.009) and unchannelized sites (Ŝ = 0.047; SE = 0.024). Channelization in headwater streams influenced population demographic parameters of stream fish. Northern Pearl Dace exhibited reduced survival in channelized sections of headwater streams flowing through the largest intact grassland ecosystem in North America. Mitigating channelization in streams may benefit persistence of native prairie fishes by increasing survival and subsequently aid in the restoration of headwater streams that flow through grassland ecosystems in North America.

Nebraska

Development and assessment of fluorescent-dyed, preserved invasive grass carp (Ctenopharyngodon idella) eggs as surrogates for live eggs in transport and dispersal control experiments

Invasive species such as grass carp ( Ctenopharyngodon idella ) pose substantial ecological threats to North American freshwater ecosystems. Understanding their early life stage behavior is critical for management efforts. From spawning to hatching, invasive carp eggs must remain suspended in the water column while drifting downstream for the best chance of survival. This highly vulnerable life stage is a potential target for population control to reduce recruitment. However, studying egg transport and potential dispersal control techniques is challenging, because the availability of live eggs and time period for experimentation are extremely limited. Additionally, accurately replicating the physical characteristics and transport mechanisms of fish eggs using surrogates in laboratory and field studies is not trivial. This study presents a novel method to create fluorescein-dyed, preserved grass carp eggs as surrogates for live eggs in transport and dispersal control experiments. This technique enables year-round studies of grass carp egg transport, offering managers a reliable tool for developing and testing dispersal control and passive sampling methods for invasive carp eggs. In this study, we rehydrate and dye preserved grass carp eggs in varying concentrations of aqueous fluorescein for a range of rehydration times, evaluate dye retention and egg visibility under ultraviolet light (UV-A), and measure diameters and settling velocities for comparison with live eggs. Eggs rehydrated in 0.100 g per liter fluorescein for 30 min maintain adequate brightness for up to 40 min in mixed conditions and exhibit mean settling velocities and densities similar to live eggs, making them ideal for laboratory experiments using quantitative imaging techniques.

River Research and Applications