USGS Science⌕ Search

USGS · 70033562

Relation between species assemblages of fishes and water quality in salt ponds and sloughs in South San Francisco Bay

Abstract

This study was conducted to characterize fishery resources inhabiting salt-evaporation ponds and sloughs in South San Francisco Bay, and to identify key environmental variables that influence distribution of fishes. The ponds, which were originally constructed and operated for commercial production of salt, have undergone preliminary modifications (installation of culverts, gates, and other water-control structures) in preparation for full restoration to mostly tidal wetlands over the next 2 decades. We sampled fish from two salt-pond complexes (Alviso complex and Eden Landing complex), each consisting of several pond systems and their associated sloughs. Cluster analysis of species of fish indicated that at least two species assemblages were present, one characteristic of ponds and the other characteristic of sloughs and slough-like ponds. The slough-like ponds exhibited water-quality conditions (especially salinity) that resembled conditions found in the sloughs. Pond fishes were represented by 12 species, whereas slough fishes were represented by 22 species. Except for bay pipefish (Syngnathus leptorhynchus), which was unique to ponds, all species present in ponds also were in sloughs and slough-like ponds. These results indicated that species of fish in ponds originated from the sloughs. According to canonical-discriminant analysis, four environmental variables were useful for discriminating between the two species assemblages. Most discriminatory power was contributed by the index of habitat connectivity, a measure of minimum distance that a fish must travel to reach a particular pond from the nearest slough. Apparently, as fish from sloughs enter and move through interconnected salt ponds, environmental stress factors increase in severity until only the more tolerant species remain. The most likely source of stress is salinity, because this variable was second in importance to the index of habitat connectivity in discriminating between the two species assemblages. Water temperature and concentration of dissolved oxygen also seemingly influenced spatial distribution of fishes, although they were less important than salinity.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

F. Mejia, M. K. Saiki, John Y. Takekawa. 2008. Relation between species assemblages of fishes and water quality in salt ponds and sloughs in South San Francisco Bay. https://doi.org/10.1894/gg-26.1

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related USGS reports

Diurnal habitat selection and survival of elk neonates

Natural selection should favor development of behaviors that increase survival, including juvenile survival. Habitat characteristics (e.g., hiding cover, forage quality and availability), maternal habitat selection, and microhabitat selection by the calf may influence elk ( Cervus canadensis ) calf survival and recruitment. We assessed diurnal microhabitat selection of bed sites by elk calves and calf-rearing areas selected by adult females to determine if these characteristics were associated with calf survival. We radio-tagged 33 elk calves in west-central New Mexico in 2011 and 55 calves in north-central New Mexico in 2012. We tracked calves daily to locate calf bedding sites and collected data on selected physical features and vegetation characteristics at used and paired random sites. The paired differences in these characteristics were then associated with calf fate. At the calf selection scale, for every 1-m difference in the distance to nearest concealment cover, the odds that a site was from a surviving calf increased by 7.8%. Habitat selection by adult females also was associated with calf survival. The odds of a bed site being from a surviving calf increased by 1.9% for every 1% difference in percentage of grass cover. High levels of concealment cover at the bed site were related to calf survival status. When we expanded selection to the adult level, females with surviving calves selected areas with higher grass cover, suggesting adult selection for higher forage availability while still providing high concealment cover for the calf.

Southwestern Naturalist↗

Analysis of mitochondrial DNA sequence data demonstrates that monophyly of myotis occultus is complicated by greater sampling of myotis lucifugus

The validity of Myotis occultus as a species unique from Myotis lucifugus has been a source of debate. Most recently, many authorities treat M. occultus as a distinct species, at least in part because a previous study showed that M. occultus and M. l. carissima (the subspecies that occurs in closest geographic proximity to M. occultus ) form separate monophyletic clades based on sequences of two mitochondrial genes (cytochrome- b [cytb] and cytochrome oxidase subunit II [COII]). We re-evaluated the phylogenetic relationship between M. occultus and M. lucifugus based on mitochondrial sequences using an expanded dataset of cytb and COII sequences that originated from more genetically diverse specimens of M. lucifugus collected across a broader geographic area. Based on a phylogenetic analysis, we found that M. occultus sublineages embedded within a well-supported clade that included some specimens of M. lucifugus . These results indicate that the previous genetic analysis demonstrating that M. occultus and M. lucifugus form distinct monophyletic groups is unsupported by our larger dataset. Future research will likely need to focus on genetic work involving whole-genome sequencing of nuclear DNA to better resolve the true taxonomic relationship between M. occultus and M. lucifugus . La valides de Myotis occultus como una especie distinta a Myotis lucifugus ha sido fuente de debate. Recientemente, muchas autoridades han considerado M. occultus como una especie diferente, en parte porque un estudio anterior mostró que M. occultus y M. l. carissima (la subespecie con la mayor proximidad geográfica a M. occultus) forman clados monofiléticos separados basados en secuencias de dos genes mitocondriales (el citocromo-b [cytb] y la subunidad II de citocromo oxidasa [COII]). Nosotros hemos reevaluado la relación filogenética entre M. occultus y M. lucifugus usando una ampliada colección de datos que contiene secuencias de los genes mitocondriales cytb y COII de especímenes de M. lucifugus genéticamente más diversos que fueron muestreados en un área geográfica más extensa. Nuestro análisis filogenético muestra que los sublinajes de M. occultus están incrustados dentro de un clado bien respaldado que incluye algunos especímenes de M. lucifugus. Estos resultados indican que el análisis genético anterior que demostró que M. occultus y M. lucifugus forman grupos monofiléticos distintos no está respaldado por nuestra más amplia colección de datos. Es probable que para resolver mejor la verdadera relación taxonómica entre M. occultus y M. lucifugus sea necesario el uso de secuenciación del genoma completo del ADN nuclear.

Southwestern Naturalist↗

Gulf killifish (Fundulus grandis) in the Pecos River: Unique life history traits in a nonnative, island population

Nonnative species may display unique life history traits when established in habitats with distinctive environmental and biotic contexts compared with their native ecosystems. Gulf killifish ( Fundulus grandis ), native to coastal habitats of the Gulf of Mexico, are established in several inland river systems where they pose a potential threat to native fishes. In the Pecos River, Texas, nonnative Gulf killifish have shown a high rate of piscivory compared with native coastal populations; otherwise, little is known about the ecology of the species in inland systems. We examined reproductive characteristics, size, and age of Gulf killifish in the Pecos River. We found that reproduction takes place approximately between late March and September, with the gonadosomatic index of females showing a large and extended peak in spring and a second minor peak in late August–September. Our age estimations indicate that this population consists mostly of fish <2 years old, similarly to that reported for coastal populations. Total length ranged 11.9–143.4 mm for males and 32.3–162.5 mm for females, indicating a sexually dimorphic size structure with Pecos River individuals reaching larger sizes compared with coastal populations. The relatively large size and piscivorous nature of Gulf killifish, along with tolerance for a wide range of environmental conditions, are attributes in nonnative species hypothesized to promote invasion success and replacement of native species.

New Mexico, Texas↗