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Source-linked reports with geographic coverage including Florida.

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Coral reefs, present and past, on the west Florida shelf and platform margin: Chapter 4

This paper summarizes the geomorphic variability of these different reef types, their geologic setting, and the present coral-reef biological community. The paper is organized along a virtual depth transect by presenting different reef settings and types starting from the shallower mid-shelf or mid-ramp setting, moving to the shelf edge, and then to the deeper upper slope.

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Controls on late Quaternary coral reefs of the Florida Keys

The Florida Keys is an arcuate, densely populated, westward-trending island chain at the south end of a karstic peninsular Florida Platform (Enos and Perkins 1977; Shinn et al. 1996; Kindinger el al. 1999, 2000). The "keys: mark the southernmost segment of the Atlantic continental margin of the United States. The islands are bordered by Florida Bay to the north and west, the Atlantic Ocean to the east and southeast , Gulf of Mexico to the west, and the Straits of Florida to the south. Prevailing southeasterly trade winds impinge on the keys, creating a windward margin. The largest coral reef ecosystem in the continental United States rims this margin at a distance of ~5-7km seaward of the keys and occupies a shallow (generally <12m), uneven, westward-sloping shelf (Parker and Cooke 1944; Parker et al. 1955; Enos and Perkins 1977). This platform is tectonically stable at present (Davis et al. 1992; Ludwig et al. 1996; Toscano and Lundberg 1999). The reefs and 240-km-long island chain parallel the submerged shelf margin, corresponding roughly to the 30-m depth contour that marks the base of a fossil shelf-edge reef (studies cited use the same criterion). The modern reef tract extends west-southwest from Soldier Key southeast of Miami (25°60 ′N, 80°20′W) to the Dry Tortugas in the Gulf of Mexico (24°40′N, 83 °10 ′W). Reef-tract habitats lie within the protective domain of the Florida Keys National Marine Sanctuary (Fig. 2.1.a-c; Multer 1996).

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Range expansion of the Mayan cichlid, cichlasoma urophthalmus (pisces, cichlidae), above 28°N in Florida

Introduced exotic species are a well-recognized problem in Florida's subtropical ecosystems. The presence of the exotic Mayan cichlid (Cichlasoma urophthalmus) was first confirmed in Florida in 1983, when numerous individuals were found in the northeastern Florida Bay. Since then, this species has continued to expand its range northward. The capture, beginning in October 2004 to present, of large numbers of Mayan cichlids from central Florida's east- and west-coast mangrove systems north of 28°N latitude is documented here. Mayan cichlids in a wide range of sizes (estimated ages 0-7 years) at both east- and west-coast sites were collected. In addition, macroscopic examination of gonads showed the presence of developing eggs. The occurrence of multiple age-classes, maturing individuals, cichlid nests, and juveniles, plus repeated collections over a four-year period, indicates that the Mayan cichlid is successfully reproducing and surviving the average winter temperatures in some estuarine waters in central Florida.

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Chloroethene dechlorination in acidic groundwater: Implications for combining fenton's treatment with natural attenuation

A sulfuric acid leak in 1988 at a chloroethene-contaminated groundwater site at the Naval Air Station Pensacola has resulted in a long-term record of the behavior of chloroethene contaminants at low pH and a unique opportunity to assess the potential impact of source area treatment technologies, which involve acidification of the groundwater environment (e.g., Fenton's-based in situ chemical oxidation), on downgradient natural attenuation processes. The greater than 75 percent decrease in trichloroethene (TCE) concentrations and the shift in contaminant composition toward predominantly reduced daughter products (dichloroethene [DCE] and vinyl chloride [VC]) that were observed along a 30-m groundwater flow path characterized by highly acidic conditions (pH = 3.5 ± 0.4) demonstrated that chloroethene reductive dechlorination can continue to be efficient under persistent acidic conditions. The detection of Dehalococcoides -type bacteria within the sulfuric acid/chloroethene co-contaminant plume was consistent with biotic chloroethene reductive dechlorination. Microcosm studies conducted with 14 C-TCE and 14 C-VC confirmed biotic reductive dechlorination in sediment collected from within the sulfuric acid/chloroethene co-contaminant plume. Microcosms prepared with sediment from two other locations within the acid plume, however, demonstrated only a limited mineralization to 14 CO 2 and 14 CO, which was attributed to abiotic degradation because no significant differences were observed between experimental and autoclaved control treatments. These results indicated that biotic and abiotic mechanisms contributed to chloroethene attenuation in the acid plume at NAS Pensacola and that remediation techniques involving acidification of the groundwater environment (e.g., Fenton's-based source area treatment) do not necessarily preclude efficient chloroethene degradation.

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Conceptual design of the Everglades Depth Estimation Network (EDEN) grid

The Everglades Depth Estimation Network (EDEN) offers a consistent and documented dataset that can be used to guide large-scale field operations, to integrate hydrologic and ecological responses, and to support biological and ecological assessments that measure ecosystem responses to the Comprehensive Everglades Restoration Plan (Telis, 2006). Ground elevation data for the greater Everglades and the digital ground elevation models derived from them form the foundation for all EDEN water depth and associated ecologic/hydrologic modeling (Jones, 2004, Jones and Price, 2007). To use EDEN water depth and duration information most effectively, it is important to be able to view and manipulate information on elevation data quality and other land cover and habitat characteristics across the Everglades region. These requirements led to the development of the geographic data layer described in this techniques and methods report. Relying on extensive experience in GIS data development, distribution, and analysis, a great deal of forethought went into the design of the geographic data layer used to index elevation and other surface characteristics for the Greater Everglades region. To allow for simplicity of design and use, the EDEN area was broken into a large number of equal-sized rectangles ('Cells') that in total are referred to here as the 'grid'. Some characteristics of this grid, such as the size of its cells, its origin, the area of Florida it is designed to represent, and individual grid cell identifiers, could not be changed once the grid database was developed. Therefore, these characteristics were selected to design as robust a grid as possible and to ensure the grid's long-term utility. It is desirable to include all pertinent information known about elevation and elevation data collection as grid attributes. Also, it is very important to allow for efficient grid post-processing, sub-setting, analysis, and distribution. This document details the conceptual design of the EDEN grid spatial parameters and cell attribute-table content.

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Marl prairie vegetation response to 20th century hydrologic change

We conducted geochronologic and pollen analyses from sediment cores collected in solution holes within marl prairies of Big Cypress National Preserve to reconstruct vegetation patterns of the last few centuries and evaluate the stability and longevity of marl prairies within the greater Everglades ecosystem. Based on radiocarbon dating and pollen biostratigraphy, these cores contain sediments deposited during the last ~300 years and provide evidence for plant community composition before and after 20th century water management practices altered flow patterns throughout the Everglades. Pollen evidence indicates that pre-20th century vegetation at the sites consisted of sawgrass marshes in a peat-accumulating environment; these assemblages indicate moderate hydroperiods and water depths, comparable to those in modern sawgrass marshes of Everglades National Park. During the 20th century, vegetation changed to grass-dominated marl prairies, and calcitic sediments were deposited, indicating shortening of hydroperiods and occurrence of extended dry periods at the site. These data suggest that the presence of marl prairies at these sites is a 20th century phenomenon, resulting from hydrologic changes associated with water management practices.

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Initial Everglades Depth Estimation Network (EDEN) digital elevation model research and development

The Everglades Depth Estimation Network (EDEN) offers a consistent and documented dataset that can be used to guide large-scale field operations, to integrate hydrologic and ecological responses, and to support biological and ecological assessments that measure ecosystem responses to the Comprehensive Everglades Restoration Plan (Telis, 2006). To produce historic and near-real time maps of water depths, the EDEN requires a system-wide digital elevation model (DEM) of the ground surface. Accurate Everglades wetland ground surface elevation data were non-existent before the U.S. Geological Survey (USGS) undertook the collection of highly accurate surface elevations at the regional scale. These form the foundation for EDEN DEM development. This development process is iterative as additional high accuracy elevation data (HAED) are collected, water surfacing algorithms improve, and additional ground-based ancillary data become available. Models are tested using withheld HAED and independently measured water depth data, and by using DEM data in EDEN adaptive management applications. Here the collection of HAED is briefly described before the approach to DEM development and the current EDEN DEM are detailed. Finally future research directions for continued model development, testing, and refinement are provided.

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A new towed platform for the unobtrusive surveying of benthic habitats and organisms

Maps of coral ecosystems are needed to support many conservation and management objectives, as well as research activities. Examples include ground-truthing aerial and satellite imagery, characterizing essential habitat, assessing changes, and monitoring the progress of restoration efforts. To address some of these needs, the U.S. Geological Survey developed the Along-Track Reef-Imaging System (ATRIS), a boat-based sensor package for mapping shallow-water benthic environments. ATRIS consists of a digital still camera, a video camera, and an acoustic depth sounder affixed to a moveable pole. This design, however, restricts its deployment to clear waters less than 10 m deep. To overcome this limitation, a towed version has been developed, referred to as Deep ATRIS. The system is based on a light-weight, computer-controlled, towed vehicle that is capable of following a programmed diving profile. The vehicle is 1.3 m long with a 63-cm wing span and can carry a wide variety of research instruments, including CTDs, fluorometers, transmissometers, and cameras. Deep ATRIS is currently equipped with a high-speed (20 frames · s-1) digital camera, custom-built light-emitting-diode lights, a compass, a 3-axis orientation sensor, and a nadir-looking altimeter. The vehicle dynamically adjusts its altitude to maintain a fixed height above the seafloor. The camera has a 29° x 22° field-of-view and captures color images that are 1360 x 1024 pixels in size. GPS coordinates are recorded for each image. A gigabit ethernet connection enables the images to be displayed and archived in real time on the surface computer. Deep ATRIS has a maximum tow speed of 2.6 m · s-1and a theoretical operating tow-depth limit of 27 m. With an improved tow cable, the operating depth can be extended to 90 m. Here, we present results from the initial sea trials in the Gulf of Mexico and Biscayne National Park, Florida, USA, and discuss the utility of Deep ATRIS for map-ping coral reef habitats. Several example mosaics illustrate the high-quality imagery that can be obtained with this system. The images also reveal the potential for unobtrusive animal observations; fish and sea turtles are unperturbed by the presence of Deep ATRIS

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Vegetative resistance to flow in South Florida: Summary of vegetation sampling in Taylor Slough, Everglades National Park, September 1997–July 1998

The U.S. Geological Survey is one of many agencies providing scientific support to the effort to restore the South Florida Everglades. In September and November 1997 and July 1998, vegetation was sampled at selected sites in the Everglades as part of a study to quantify vegetative resistance to flow. The objectives of the vegetation sampling are (1) to provide detailed information on species composition, vegetation characteristics, and biomass for quantification of the effect of vegetation on water flow, and (2) to use these data in the future to infer flow resistance from vegetation information. Forty-two vegetation quadrats were sampled in Taylor Slough to determine the number and width of stems and leaves and the biomass of live and dead standing sawgrass, rush, and other plants, and the biomass of dead litter and periphyton. The samples were grouped into ten vegetation classes based on species composition and total biomass minus periphyton biomass.

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Sea level rise in Tampa Bay

Understanding relative sea level (RSL) rise during periods of rapid climatic change is critical for evaluating modern sea level rise given the vulnerability of Antarctic ice shelves to collapse [ Hodgson et al, 2006], the retreat of the world's glaciers [ Oerlemans, 2005], and mass balance trends of the Greenland ice sheet [ Rignot and Kanagaratnam, 2006]. The first-order pattern of global sea level rise following the Last Glacial Maximum (LGM, ∼21,000 years ago) is well established from coral [ Fairbanks, 1989], continental shelf [ Hanebuth et al, 2000], and other records [ Pirazzoli, 2000] and has been integrated into a global ICE-5G model of glacio-isostatic adjustment (GIA) [ Peltier, 2004]. However, uncertainty introduced by paleo water depth of sea level indicators, radiocarbon chronology (i.e., reservoir corrections for marine shell dates), postglacial isostatic adjustment, and other processes affecting vertical position of former shorelines produces scatter in RSL curves, limiting our knowledge of sea level rise during periods of rapid glacial decay. One example of this limitation is the Gulf of Mexico/Florida region where, despite decades of study, RSL curves produce two conflicting patterns: those showing progressive submergence with a decelerating rate during the past 5000 years [ Scholl et al, 1969] and those showing high sea level during the middle of the Holocene [ Blum et al, 2001; Balsillie and Donoghue, 2004], where the Holocene represents a geologic epoch that extends from about 10,000 years ago to present times. This discrepancy is emblematic of the uncertainty surrounding Holocene sea level and ice volume history in general.

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Examples of landfill-generated plumes in low-relief areas, southeast Florida

Areas of low topographic relief have low water-table gradients and make the direction of movement of contaminants from land fills in the ground water difficult to predict from regional gradients alone. The landfill, nearby free-flowing ditches or canals, variations in hydraulic conductivity, and the influence of nearby pumping wells can all affect the direction of flow. In low-gradient areas the concepts of “upgradient” and “downgradient” are less useful in planning the location of monitoring wells than in areas of higher relief. Low-relief areas also may be affected by the discharge of mineralized water from deeper aquifers, naturally or through irrigation, which can mask geochemical surveys intended to detect landfill leachate. Examples of effects of low topographic relief are noted in southeast Florida where water-table gradients are 7×10 − - 4 to 5×10 − - 4 feet per foot. Water-table mounding beneath the landfill and the drainage effects of nearby ditches and well have created multiple leachate plumes in Stuart where one plume migrated in a direction opposite to the apparent regional gradient. In Coral Springs analysis suggests a bifurcating plume migrating along two narrow zones. In Fort Pierce it was difficult to detect leachate because of mineralized irrigation water and fertilizer runoff from an adjacent citrus grove.

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Evapotranspiration and canopy resistance at an undeveloped prairie in a humid subtropical climate

Reliable estimates of evapotranspiration from areas of wildland vegetation are needed for many types of water-resource investigations. However, little is known about surface fluxes from many areally important vegetation types, and relatively few comparisons have been made to examine how well evapotranspiration models can predict evapotranspiration for soil-, climate-, or vegetation-types that differ from those under which the models have been calibrated. In this investigation at a prairie site in west-central Florida, latent heat flux (λ E ) computed from the energy balance and alternatively by eddy covariance during a 15-month period differed by 4 percent and 7 percent on hourly and daily time scales, respectively. Annual evapotranspiration computed from the energy balance and by eddy covariance were 978 and 944 mm, respectively. An hourly Penman-Monteith (PM) evapotranspiration model with stomatal control predicated on water-vapor-pressure deficit at canopy level, incoming solar radiation intensity, and soil water deficit was developed and calibrated using surface fluxes from eddy covariance. Model-predicted λ E agreed closely with λ E computed from the energy balance except when moisture from dew or precipitation covered vegetation surfaces. Finally, an hourly PM model developed for an Amazonian pasture predicted λ E for the Florida prairie with unexpected reliability. Additional comparisons of PM-type models that have been developed for differing types of short vegetation could aid in assessing interchangeability of such models.

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Characterization of suspended particles in Everglades wetlands

We report the concentration, phosphorus (P) and nitrogen (N) content, and size and chemical fractionation of fine suspended particles (0.2‐100 µm) and colloids (3 kilodalton [kDa]‐0.1 µm) in the surface water of Everglades wetlands along regional and P‐enrichment gradients. Total suspended sediment concentrations ranged from 0.7 to 2.7 mg L −1 . Total particulate P concentrations increased from 0.05 µmol L21 to 0.31 µmol L −1 along the Penrichment gradient. Particles contained from 20% to 43% of total P but <12% of total N in surface water. Dissolved (<0.2 µm) organic N contained about 90% of total N, with the 3‐100‐kDa colloidal size class containing the most N of any size class. The 0.45‐2.7‐µm size fraction held the most particulate P at all sites, whereas particulate N was most abundant in the 2.7‐10‐µm size class at most sites. Standard chemical fractionation of particles identified acid‐hydrolyzable P as the most abundant species of particulate P, with little reactive or refractory organic P. Sequential chemical extraction revealed that about 65% of total particulate P was microbial, while about 25% was associated with humic and fulvic organic matter. The size and chemical fractionation information suggested that P‐rich particles mostly consisted of suspended bacteria. Suspended particles in Everglades wetlands were small in size and had low concentrations, yet they stored a large proportion of surface‐water P in intermediately reactive forms, but they held little N.

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Exploring the temporal effects of seasonal water availability on the snail kite of Florida: Part III

The Florida snail kite ( Rostrhamus sociabilis ) is an endangered raptor that occurs as an isolated population, currently of about 2,000 birds, in the wetlands of southern and central Florida, USA. Its exclusive prey species, the apple snail ( Pomacea paludosa ) is strongly influenced by seasonal changes in water abundance. Droughts during the snail kite breeding season have a direct negative effect on snail kite survival and reproduction, but droughts are also needed to maintain aquatic vegetation types favorable to snail kite foraging for snails. We used a spatially explicit matrix model to explore the effects of temporal variation in water levels on the viability of the snail kite population under different temporal drought regimes in its wetland breeding habitat. We focused on three aspects of variations in water levels that were likely to affect kites: (1) drought frequency; (2) drought duration; and (3) drought timing within the year. We modeled a 31-year historical scenario using four different scenarios in which the average water level was maintained constant, but the amplitude of water level fluctuations was modified. Our results reveal the complexity of the effects of temporal variation in water levels on snail kite population dynamics. Management implications of these results are discussed. In particular, management decisions should not be based on annual mean water levels alone, but must consider the intra-annual variability.

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Paleoenvironmental assessment of recent environmental changes in Florida Bay, USA: a biomarker based study

The extractable lipid compositions in four Florida Bay cores were determined in order to understand environmental changes over the last 160 years. The most significant environmental change was recorded by oscillations in the amplitude and frequency of biomarkers during the 20th century. Two seagrass molecular proxies (Paq and the C 25 /C 27 n-alkan-2-one ratio) reached a maximum post 1900, suggesting that abundant seagrass communities existed during the 20th century. A sharp drop in the Paq value from 0.65 to 0.48 in the central Bay at about 1987 seems to reflect seagrass die-off. The concentrations of microbial biomarkers (C 20 HBIs, C 25 HBIs and dinosterol) substantially increased after 1950 in the TC, BA and NB cores, reflecting an increase in algal (planktonic organism) primary productivity. However, the RB core presented the highest abundance of C 25 HBIs and dinosterol during the period of 1880–1940, suggesting historically large inputs from diatoms and dinoflagellates. A substantial rise in abundance of taraxerol (a specific biomarker of mangroves) from 20 μg/g TOC in the 1830s to 279 μg/g TOC in the l980s is likely a result of increased mangrove primary productivity along the shore of the NE Bay. These changes are most likely the result of hydrological alterations in South Florida.

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Seasonal variations on the residence times and partitioning of short-lived radionuclides ( 234 Th, 7 Be and 210 Pb) and depositional fluxes of 7 Be and 210 Pb in Tampa Bay, Florida

Historically, Tampa Bay has been impacted heavily by a wide range of anthropogenic perturbations that may include, agricultural-, shipping-, phosphate mining/distribution-related activities, as well as a burgeoning coastal population. Due to the presence of U-rich underlying sediments, elevated activities of U- and Th-series daughter products may be naturally released into this system. This region is also known for summer thunderstorms and corresponding increases in precipitation and surface water runoff. Only limited work has been conducted on the partitioning of particle-reactive radionuclides (such as 7 Be, 210 Pb, and 234 Th) in such a dynamic coastal system. We investigated both the removal residence time and partitioning of these radionuclides between filter-retained particulate matter (≥ 0.5 μm) and the filtrate (< 0.5 μm) phase during late spring (June 2003) and mid summer (August 2003) in the water column of Tampa Bay. Our results indicate that the partitioning of 7 Be, 210 Pb, and 234 Th between filtrate and filter-retained phase is controlled foremost by enhanced bottom resuspension events during summer thunderstorms. As a consequence, no significant relationship exists between the distribution coefficients (Kd values) of these isotopes and the concentration of suspended particulate matter (SPM). Relatively faster recycling rates of atmospheric water vapor derived from the ocean results in lower atmospheric depositional fluxes of 210 Pb to the study site than predicted. The relationship between 7 Be and 210 Pb in bulk (wet + dry) deposition is compared to their respective water column activities. The residence times of particulate and dissolved 234 Th, 7 Be and 210 Pb, as well the distribution coefficients of these radionuclides, are then compared to values reported in other coastal systems.

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Ra and Rn isotopes as natural tracers of submarine groundwater discharge in Tampa Bay, Florida

A suite of naturally occurring radionuclides in the U/Th decay series ( 222 Rn, 223,224,226,228 Ra) were studied during wet and dry conditions in Tampa Bay, Florida, to evaluate their utility as groundwater discharge tracers, both within the bay proper and within the Alafia River/estuary — a prominent free-flowing river that empties into the bay. In Tampa Bay, almost 30% of the combined riverine inputs still remain ungauged. Consequently, groundwater/surface water (hyporheic) exchange in the discharging coastal rivers, as well as submarine groundwater discharge (SGD) within the bay, are still unresolved components of this system's water and material budgets. Based on known inputs and sinks, there exists an excess of 226 Ra in the water column of Tampa Bay, which can be evaluated in terms of a submarine groundwater contribution to the bay proper. Submarine groundwater discharge rates calculated using a mass balance of excess 226 Ra ranged from 2.2 to 14.5 L m − 2 day − 1 , depending on whether the estuarine residence time was calculated using 224 Ra/xs 228 Ra isotope ratios, or whether a long term, averaged model-derived estuarine residence time was used. When extrapolated to the total shoreline length of the bay, such SGD rates ranged from 1.6 to 10.3 m 3 m − 1 day − 1 . Activities of 222 Rn were also elevated in surface water and shallow groundwater of the bay, as well as in the Alafia River estuary, where upstream activities as high as 250 dpm L − 1 indicate enhanced groundwater/surface water exchange, facilitated by an active spring vent. From average nutrient concentrations of 39 shallow, brackish, groundwater samples, rates of nutrient loading into Tampa Bay by SGD rates were estimated, and these ranged from 0.2 to 1.4 × 10 5 mol day − 1 (PO 4 3− ), 0.9–6.2 × 10 5 mol day − 1 (SiO 4 − ), 0.7–5.0 × 10 5 mol day − 1 (dissolved organic nitrogen, DON), and 0.2–1.4 × 10 6 mol day − 1 (total dissolved nitrogen, TDN). Such nutrient loading estimates, when compared to average river discharge estimates (e.g., TDN = 6.9 × 10 5 mol day − 1 ), suggest that SGD-derived nutrient fluxes to Tampa Bay are indeed important components to the overall nutrient economy of these coastal waters.

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