Geology topics

Research about Florida

Source-linked reports with geographic coverage including Florida.

At least 253 records · Page 14Linked to original sources

USGS2021

Monitoring abundance of aggregated animals (Florida manatees) using an unmanned aerial system (UAS)

Imperfect detection is an important problem when counting wildlife, but new technologies such as unmanned aerial systems (UAS) can help overcome this obstacle. We used data collected by a UAS and a Bayesian closed capture-mark-recapture model to estimate abundance and distribution while accounting for imperfect detection of aggregated Florida manatees ( Trichechus manatus latirostris ) at thermal refuges to assess use of current and new warmwater sources in winter. Our UAS hovered for 10 min and recorded 4 K video over sites in Collier County, FL. Open-source software was used to create recapture histories for 10- and 6-min time periods. Mean estimates of probability of detection for 1-min intervals at each canal varied by survey and ranged between 0.05 and 0.92. Overall, detection probability for sites varied between 0.62 and 1.00 across surveys and length of video (6 and 10 min). Abundance varied by survey and location, and estimates indicated that distribution changed over time, with use of the novel source of warmwater increasing over time. The highest cumulative estimate occurred in the coldest winter, 2018 (N = 158, CI 141–190). Methods here reduced survey costs, increased safety and obtained rigorous abundance estimates at aggregation sites previously too difficult to monitor.

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USGS2021

Fire, land cover, and temperature drivers of bat activity in winter

Background Understanding the effects of disturbance events, land cover, and weather on wildlife activity is fundamental to wildlife management. Currently, in North America, bats are of high conservation concern due to white-nose syndrome and wind-energy development impact, but the role of fire as a potential additional stressor has received less focus. Although limited, the vast majority of research on bats and fire in the southeastern United States has been conducted during the growing season, thereby creating data gaps for bats in the region relative to overwintering conditions, particularly for non-hibernating species. The longleaf pine ( Pinus palustris Mill.) ecosystem is an archetypal fire-mediated ecosystem that has been the focus of landscape-level restoration in the Southeast. Although historically fires predominately occurred during the growing season in these systems, dormant-season fire is more widely utilized for easier application and control as a means of habitat management in the region. To assess the impacts of fire and environmental factors on bat activity on Camp Blanding Joint Training Center (CB) in northern Florida, USA, we deployed 34 acoustic detectors across CB and recorded data from 26 February to 3 April 2019, and from 10 December 2019 to 14 January 2020. Results We identified eight bat species native to the region as present at CB. Bat activity was related to the proximity of mesic habitats as well as the presence of pine or deciduous forest types, depending on species morphology ( i.e., body size, wing-loading, and echolocation call frequency). Activity for all bat species was influenced positively by either time since fire or mean fire return interval. Conclusion Overall, our results suggested that fire use provides a diverse landscape pattern at CB that maintains mesic, deciduous habitat within the larger pine forest matrix, thereby supporting the diverse bat community at CB during the dormant season and early spring.

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USGS2021

Spatial ecology of invasive Burmese pythons in southwestern Florida

Understanding the spatial ecology of an invasive species is critical for designing effective control programs. Determining and quantifying home range estimates and habitat associations can streamline targeted removal efforts for wide-ranging, cryptic animals. The Burmese python ( Python bivittatus ) is a large-bodied constrictor snake with an established and expanding invasive population in southern Florida. This apex predator has severely impacted native wildlife across the Greater Everglades ecosystem. However, limited ecological information exists on this invasive species at the landscape level. Here, we present results from a study using radiotelemetry to quantify movements and habitat use patterns of 25 adult Burmese pythons in southwestern Florida, USA, for average periods of 814 d (range: 288–1809). Our objective was to quantify home range size, movement rates, and second- and third-order habitat selection. Mean annual home range size was 7.5 km 2 ± 2.9 km 2 (95% kernel density estimate), and pythons moved at a maximum mean daily rate of 0.52 km/d. Burmese pythons selected agriculture, freshwater wetland, saline wetland, and upland land cover classes but avoided open water and urban land cover classes. Nest site selection was highest for pythons at an elevation of 1.7 m with nesting hotspots concentrated on the borders of urban and agricultural areas or in sandy forested upland habitats. A broader understanding of the spatial utilization of Burmese pythons will enhance the utility of emerging control strategies across their invaded range.

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USGS2021

Estimating the influence of oyster reef chains on freshwater detention at the estuary scale using Landsat-8 imagery

Oyster reef chains grow in response to local hydrodynamics and can redirect flows, particularly when reef chains grow perpendicular to freshwater flow paths. Singularly, oyster reef chains can act as porous dams that may facilitate nearshore accumulation of fresh or low-salinity water, in turn creating intermediate salinities that support oyster growth and estuarine conditions. However, oyster-driven freshwater detention has only been confirmed by limited, point-scale observational data, and simplified models. Oyster reef-driven freshwater detention in real ecosystems at the estuary scale remains largely unexplored. In this study, we analyzed the visible bands in 30-m resolution remote sensing (RS) images recorded by the Operational Land Imager aboard Landsat-8 to characterize the freshwater detention effect of oyster reef chains across a set of hydrologic conditions. Our results support prior findings indicating that 30-m resolution RS images recorded by the Operational Land Imager aboard Landsat-8 are useful for analyzing coastal dynamics after atmospheric correction, despite having been originally designed for terrestrial studies. Statistical models of water-leaving reflectance revealed that freshwater detention by oyster reefs was evident across the estuary, with the greatest effect occurring in the region closest to shore. Additionally, statistical modeling results and spatial patterns apparent in the satellite images suggested that reef-driven freshwater detention occurred under high riverine discharge conditions, but was less evident when flow was low. Beyond offering insight on the potential role of oyster reefs as mediators of estuarine hydrology, this study presents a transferable methodological framework for exploring estuarine biophysical feedbacks in blackwater river estuaries using satellite remote sensing.

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USGS2021

Flow characteristics and salinity patterns in tidal rivers within the northern Ten Thousand Islands, southwest Florida, water years 2007–19

Freshwater flow to the Ten Thousand Islands (TTI) estuary has been altered by the construction of the Tamiami Trail and construction of features in the now defunct Southern Golden Gate Estates development. This development included four associated canals that combine into the Faka Union Canal, which discharges into the TTI estuary. The Picayune Strand Restoration Project (PSRP) was initiated in 2007 to improve freshwater delivery to the TTI estuary by removing hundreds of miles of roads, emplacing hundreds of canal plugs, removing exotic vegetation, and constructing three pump stations. Quantifying the tributary flows and salinity patterns prior to, during, and after the restoration is essential to assessing the effectiveness of upstream restoration efforts. The U.S. Geological Survey, in cooperation with U.S. Army Corps of Engineers, initiated an ongoing study in 2006 to assess flow and salinity patterns in the TTI estuary. This is the second report by the U.S. Geological Survey describing flow characteristics and salinity patterns in the TTI area as part of the PSRP. This report describes flow characteristics and salinity patterns for the monitoring stations at Faka Union River, Pumpkin River, and East River and includes an assessment of salinity data from the Faka Union Boundary and Blackwater River water-quality stations for water years 2007–19. A water year is defined as the 12-month period from October 1 for any given year to September 30 of the following year. Annual and monthly variations in flow and salinity are often related to variations in rainfall with high and low annual flows (and below average and above average salinities) typically occurring during years with high and low annual rainfall, respectively. Monthly flows typically begin increasing in June and peak in September. Over the study period, positive trends in rainfall-adjusted monthly flow were detected at Faka Union River and East River, whereas no significant trend in flow was detected at Pumpkin River. Faka Union River is the largest contributor of freshwater to the TTI estuary, providing over 80 percent of the annual freshwater inflow to the estuary. The Faka Union Canal is expected to be the largest contributor of freshwater because until the PSRP is completed, the Faka Union Canal receives substantial drainage from multiple canals, which is not the case for Pumpkin and East Rivers. East River was the second largest contributor, followed by Pumpkin River. East River is downstream of the Fakahatchee Stand, which is a larger contributing area than the current contributing area for Pumpkin River. Monthly mean salinities were lowest at Faka Union River and East River, indicating that they received a greater amount of freshwater than the stations to the west. Negative trends in rainfall-adjusted salinity monthly means were observed at all monitoring stations during the study period. Increased trends in flow and decreased trends in salinity are attributed to increases in flow from upstream canals.

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USGS2021

American crocodiles (Crocodylus acutus) as restoration bioindicators in the Florida Everglades

The federally threatened American crocodile ( Crocodylus acutus ) is a flagship species and ecological indicator of hydrologic restoration in the Florida Everglades. We conducted a long-term capture-recapture study on the South Florida population of American crocodiles from 1978 to 2015 to evaluate the effects of restoration efforts to more historic hydrologic conditions. The study produced 10,040 crocodile capture events of 9,865 individuals and more than 90% of captures were of hatchlings. Body condition and growth rates of crocodiles were highly age-structured with younger crocodiles presenting with the poorest body condition and highest growth rates. Mean crocodile body condition in this study was 2.14±0.35 SD across the South Florida population. Crocodiles exposed to hypersaline conditions (> 40 psu) during the dry season maintained lower body condition scores and reduced growth rate by 13% after one year, by 24% after five years, and by 29% after ten years. Estimated hatchling survival for the South Florida population was 25% increasing with ontogeny and reaching near 90% survival at year six. Hatchling survival was 34% in NE Florida Bay relative to a 69% hatchling survival at Crocodile Lake National Wildlife Refuge and 53% in Flamingo area of Everglades National Park. Hypersaline conditions negatively affected survival, growth and body condition and was most pronounced in NE Florida Bay, where the hydrologic conditions have been most disturbed. The American crocodile, a long-lived animal, with relatively slow growth rate provides an excellent model system to measure the effects of altered hydropatterns in the Everglades landscape. These results illustrate the need for continued long-term monitoring to assess system-wide restoration outcomes and inform resource managers.

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USGS2021

Summary of oceanographic and water-quality measurements offshore of Matanzas Inlet, Florida, 2018

U.S. Geological Survey (USGS) scientists and technical staff deployed instrumented underwater platforms and buoys to collect oceanographic and atmospheric data at two sites near Matanzas Inlet, Florida, on January 24, 2018, and recovered them on April 13, 2018. Matanzas Inlet is a natural, unmaintained inlet on the Florida Atlantic coast that is well suited to study inlet and cross-shore processes. The two study sites were located offshore of the surf zone, in 9 and 15 meters of water depth, in a line perpendicular to the coast. A sea-floor platform was deployed at each site to measure ocean currents, wave motions, acoustic and optical backscatter, temperature, salinity, and pressure. The objective was to quantify the hydrodynamic forcing for sediment transport and the response to such forcing near the seabed in the vicinity of an unmaintained inlet.

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USGS2021

Rediscovery and genetic confirmation of the Threeridge Mussel, Amblema plicata (Say, 1817) (Bivalvia, Unionidae), in the Choctawhatchee River, Florida, USA

Recent freshwater mussel research has resulted in rediscovery of several species presumed extinct. We report the rediscovery of Amblema plicata (Say, 1817) in 2019 from the Choctawhatchee River, Florida, USA. Amblema plicata has not been reported in the Choctawhatchee river basin since 1958, more than 61 years ago. This species was collected during the long-term monitoring of freshwater mussels in Florida streams. We provide genetic confirmation of our voucher identification using a DNA barcoding approach and discuss potential risks to A. plicata populations in the Choctawhatchee river basin.

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USGS2021

Using the Landsat Burned Area products to derive fire history relevant for fire management and conservation in the state of Florida, southeastern USA

Development of comprehensive spatially explicit fire occurrence data remains one of the most critical needs for fire managers globally, and especially for conservation across the southeastern United States. Not only are many endangered species and ecosystems in that region reliant on frequent fire, but fire risk analysis, prescribed fire planning, and fire behavior modeling are sensitive to fire history due to the long growing season and high vegetation productivity. Spatial data that map burned areas over time provide critical information for evaluating management successes. However, existing fire data have undocumented shortcomings that limit their use when detailing the effectiveness of fire management at state and regional scales. Here, we assessed information in existing fire datasets for Florida and the Landsat Burned Area products based on input from the fire management community. We considered the potential of different datasets to track the spatial extents of fires and derive fire history metrics (e.g., time since last burn, fire frequency, and seasonality). We found that burned areas generated by applying a 90% threshold to the Landsat burn probability product matched patterns recorded and observed by fire managers at three pilot areas. We then created fire history metrics for the entire state from the modified Landsat Burned Area product. Finally, to show their potential application for conservation management, we compared fire history metrics across ownerships for natural pinelands, where prescribed fire is frequently applied. Implications of this effort include increased awareness around conservation and fire management planning efforts and an extension of derivative products regionally or globally.

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USGS2021

EverForecast—A near-term forecasting application for ecological decision support

The Everglades Forecasting application (EverForecast) provides decision makers with a support tool to examine optimal allocations of water across the managed landscape while explicitly quantifying the conflicting needs of multiple species. Covering the Greater Everglades (a vast, subtropical wetland ecosystem in South Florida), EverForecast provides 6-month forecasts of daily projected water stage across the region. It then runs these forecasts through a suite of species models and illustrates potential tradeoffs. All output is summarized by subregion and hydrologic category. Decision makers can use these near-term forecasts to manage the transition from current conditions to future alternatives according to their management priorities.

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USGS2021

Reply to comment by R. Parkinson on “Increasing rates of carbon burial in southwest Florida coastal wetlands” by J. Breithaupt et al.

Breithaupt et al. (2020) investigated why rates of organic carbon (OC) burial in coastal wetlands appear to increase over the past ∼120 years. After comparing dating methods and applying biogeochemical analyses, we concluded that neither dating method nor carbon degradation contribute to the observed trend. Rather, we concluded that OC burial has increased in the past century. Parkinson's (2021) Comment disagrees with our conclusion, contending that: 1) use of a density correction to account for soil auto‐compaction is a flawed methodology that artificially shortens a core's length, 2) there is limited evidence for an acceleration in the regional sea‐level rise (SLR) rate, and 3) vertical accretion rates in previous papers by Breithaupt et al. (2014, 2017) are lower than the regional mean rate of SLR and are not to be believed as these wetlands should have converted to open water by now. We reject these contentions because: 1) no density correction was applied to the cores in this study, 2) local tide gauge records and analyses in the literature support an increase in SLR rates coinciding with the timeframe of our OC burial records, and 3) Parkinson's comparison of the 100‐yr mean rate of SLR neglects temporal variability and uncertainties in the long‐term sea‐level record, as well as biophysical feedbacks between wetland surface elevation and SLR. Here, we provide detailed responses to Parkinson's contentions and establish the importance of differentiating operational definitions of OC burial and accretion to clarify why an auto‐compaction correction is not applicable for OC burial measurements.

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USGS2021

Identifying information gaps in predicting winter foraging habitat for juvenile Gulf Sturgeon

The Gulf Sturgeon Acipenser oxyrinchus desotoi is an anadromous species that inhabits Gulf of Mexico coastal waters from Louisiana to Florida and is listed as threatened under the U.S. Endangered Species Act. Seasonal cues (e.g., freshwater discharge) determine the timing of spawning and migration and may influence the availability of critical habitat during winter months in six estuaries. Large information gaps, especially related to critical estuarine habitat for juveniles, hinder recovery efforts to protect these habitats and assess risks from emerging threats. Using Apalachicola Bay, Florida, as a model system, we developed and analyzed a preliminary Bayesian network model so that we could identify knowledge gaps (i.e., where expert knowledge was lacking) and data gaps (i.e., where data were unavailable) that limit the ability to assess the quantity of critical estuarine habitat for juvenile Gulf Sturgeon. The model hypothesized habitat availability per winter month in estuarine habitat under alternative scenarios of river discharge and length of the winter foraging season. A search for geospatial data sets revealed that the largest gap involved salinity, temperature, and oxygen (i.e., water condition) monitoring data, with data available only for Apalachicola Bay. For the Apalachicola Bay model, data gaps prevented the development of 53% of water condition geospatial data sets and a sensitivity analysis showed that water condition data most limited the ability to predict habitat availability. Expert knowledge was low, and conditional certainty scores showed that the relationships with the lowest certainty were abiotic suitability and habitat availability. Reducing information gaps could aid the development of a model that is appropriate for informing management. Future efforts could prioritize the expansion of water monitoring within critical habitat estuaries and predicting abiotic suitability and habitat availability. Bayesian network models can easily incorporate prior and new information for complex systems. Thus, our model could be updated as future research and monitoring efforts close these information gaps.

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USGS2021

Winter roost selection of Lasiurine tree bats in a pyric landscape

Day-roost selection by Lasiurine tree bats during winter and their response to dormant season fires is unknown in the southeastern United States where dormant season burning is widely applied. Although fires historically were predominantly growing season, they now occur in the dormant season in this part of the Coastal Plain to support a myriad of stewardship activities, including habitat management for game species. To examine the response of bats to landscape condition and the application of prescribed fire, in the winter of 2019, we mist-netted and affixed radio-transmitters to 16 Lasiurine bats, primarily Seminole bats ( Lasiurus seminolus ) at Camp Blanding Joint Training Center in northern Florida. We then located day-roost sites to describe roost attributes. For five Seminole bats, one eastern red bat ( Lasiurus borealis ), and one hoary bat ( Lasiurus cinereus ), we applied prescribed burns in the roost area to observe bat response in real-time. Generally, Seminole bats selected day-roosts in mesic forest stands with high mean fire return intervals. At the roost tree scale, Seminole day-roosts tended to be larger, taller and in higher canopy dominance classes than surrounding trees. Seminole bats roosted in longleaf ( Pinus palustris) , slash ( Pinus elliotii ) and loblolly pine ( Pinus taeda ) more than expected based on availability, whereas sweetbay ( Magnolia virginiana ), water oak ( Quercus nigra ) and turkey oak ( Quercus laevis ), were roosted in less than expected based on availability. Of the seven roosts subjected to prescribed burns, only one male Seminole bat and one male eastern red bat evacuated during or immediately following burning. In both cases, these bats had day-roosted at heights lower than the majority of other day-roosts observed during our study. Our results suggest Seminole bats choose winter day-roosts that both maximize solar exposure and minimize risks associated with fire. Nonetheless, because selected day-roosts largely were fire-dependent or tolerant tree species, application of fire does need to periodically occur to promote recruitment and retention of suitable roost sites.

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USGS2021

Migration of injected wastewater with high levels of ammonia in a saline aquifer in south Florida

Treated wastewater with high levels of ammonia has been injected, since March 1983 into the deep saline units of the Lower Floridan aquifer (LFA) from a treatment plant near the east coast of Miami-Dade County in southeastern Florida. Monitoring wells in the plant recorded ammonia concentrations above ambient levels at hydrogeologic units located about 1000 ft (304.8 m) above injection depths between 2500 and 2800 ft (762 and 853 m) below sea level. A solute-transport model was developed to assess the horizontal and vertical extent of the injected ammonia, with ammonia moving from the injected zone into the overlying units: the upper semiconfining unit, the uppermost permeable zone of the LFA, and the middle semiconfining units of the Avon Park Formation. Ammonia is assumed to be transported under the effects of local heterogeneity in a porous limestone aquifer with high-salinity ambient groundwater and via upward migration through quasi-vertical pathways. A flow model of the migration of the injected ammonia was calibrated with PEST using head, salinity, and ammonia concentration data measured from 1983 to 2013. Borehole geophysical data support the high permeability of the uppermost permeable zone in the LFA. Average simulated head, normalized salinity, and ammonia concentration residuals over all monitoring wells were −1.37 ft, 0.01, and −0.67 mg/L, respectively. Model results are consistent with undetectable ammonia concentrations in the Upper Floridan aquifer.

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USGS2021

Home ranges and movements of two diamondback terrapins (Malaclemys terrapin macrospilota) in northwest Florida

The diamondback terrapin ( Malaclemys terrapin ) is a small estuarine turtle distributed along the Atlantic and Gulf Coasts of the USA that is threatened by drowning in crab pots, road mortality, exploitation in the pet trade, and habitat loss. Little is known about the movement patterns and home ranges of these turtles, particularly along the U.S. Gulf of Mexico coast. Satellite tags were deployed on two adult female terrapins captured at two distinct sites in Northwest Florida. A first-difference correlated random walk approach was used to determine distances traveled and estimate home range for each individual. The two terrapins were tracked for 146 and 147 days, and the total distance traveled for each terrapin was 70.1 km and 723.0 km, respectively. The maximum distance moved from capture location was 11.3 km and 49.6 km. Home ranges here were much larger than those previously reported in other studies. The movements we documented were greater than expected and indicate habitat protection for this species may need to be expanded to incorporate more distant foraging sites.

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USGS2021

Reconstructing population dynamics of a threatened marine mammal using multiple data sets

Models of marine mammal population dynamics have been used extensively to predict abundance. A less common application of these models is to reconstruct historical population dynamics, filling in gaps in observation data by integrating information from multiple sources. We developed an integrated population model for the Florida manatee ( Trichechus manatus latirostris ) to reconstruct its population dynamics in the southwest region of the state over the past 20 years. Our model improved precision of key parameter estimates and permitted inference on poorly known parameters. Population growth was slow (averaging 1.02; 95% credible interval 1.01–1.03) but not steady, and an unusual mortality event in 2013 led to an estimated net loss of 332 (217–466) manatees. Our analyses showed that precise estimates of abundance could be derived from estimates of vital rates and a few input estimates of abundance, which may mean costly surveys to estimate abundance don’t need to be conducted as frequently. Our study also shows that retrospective analyses can be useful to: (1) model the transient dynamics of age distribution; (2) assess and communicate the conservation status of wild populations; and (3) improve our understanding of environmental effects on population dynamics and thus enhance our ability to forecast.

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USGS2021

Integrated hierarchical models to inform management of transitional habitat and the recovery of a habitat specialist

Quantifying the contribution of habitat dynamics relative to intrinsic population processes in regulating species persistence remains an ongoing challenge in ecological and applied conservation. Understanding these drivers and their relationship is essential for managing habitat‐dependent species, especially those that specialize in transitional habitats. Limitations in the ability of natural disturbance to mediate transitional habitat dynamics have resulted in a decline in early‐ and mid‐successional vegetation structure and prompted the need for aggressive habitat management to replace natural perturbations and increase habitat structural complexity. We describe a collaborative effort with a group of independent land managers to design an adaptive management program for restoring an imperiled ecosystem and recovering declining populations of an endemic habitat specialist. We developed a set of integrated, hierarchical models to estimate management‐mediated transition rates among vegetation classes in two dominant scrub communities and the species response (local colonization and extinction probabilities) as a function of habitat state. Models were fit using a long‐term data set of habitat and occupancy observations from 361 Florida scrub‐jay territories across two Florida counties. Occupancy model results correspond closely to previous approaches of estimating differential survival and reproductive success associated with habitat conditions, with highest colonization and lowest extinction rates estimated for those habitat states found to have the highest rates of survival and reproduction. In addition to offering an innovative approach for jointly modeling habitat and species population dynamics, the program we describe will also be of interest from a management perspective by providing guidance for developing collaborative, adaptive management frameworks from the ground up. We engaged land managers via workshops to specify objectives and desired state‐variable conditions, identify management alternatives, and elicit consensus opinions on model parameters. Treating expert opinions as pseudo‐observations to define Dirichlet priors allowed us to make use of existing management knowledge. Formal learning was then accumulated by updating transition probability estimates as management activities were implemented over the study period. We believe this adaptive management framework provides a useful approach for increasing our understanding of complex ecological relationships and hope that it will be adopted by others who have interest in informing management and conservation efforts.

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USGS2021

Joint species distribution models of Everglades wading birds to inform restoration planning

Restoration of the Florida Everglades, a substantial wetland ecosystem within the United States, is one of the largest ongoing restoration projects in the world. Decision-makers and managers within the Everglades ecosystem rely on ecological models forecasting indicator wildlife response to changes in the management of water flows within the system. One such indicator of ecosystem health, the presence of wading bird communities on the landscape, is currently assessed using three species distribution models that assume perfect detection and report output on different scales that are challenging to compare against one another. We sought to use current advancements in species distribution modeling to improve models of Everglades wading bird distribution. Using a joint species distribution model that accounted for imperfect detection, we modeled the presence of nine species of wading bird simultaneously in response to annual hydrologic conditions and landscape characteristics within the Everglades system. Our resulting model improved upon the previous model in three key ways: 1) the model predicts probability of occupancy for the nine species on a scale of 0–1, making the output more intuitive and easily comparable for managers and decision-makers that must consider the responses of several species simultaneously; 2) through joint species modeling, we were able to consider rarer species within the modeling that otherwise are detected in too few numbers to fit as individual models; and 3) the model explicitly allows detection probability of species to be less than 1 which can reduce bias in the site occupancy estimates. These improvements are essential as Everglades restoration continues and managers require models that consider the impacts of water management on key indicator wildlife such as the wading bird community.

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