Geology topics

Research about California

Source-linked reports with geographic coverage including California.

At least 1,027 records · Page 57Linked to original sources

USGS2021

Resilience of native amphibian communities following catastrophic drought: Evidence from a decade of regional-scale monitoring

The increasing frequency and severity of drought may exacerbate ongoing global amphibian declines. However, interactions between drought and coincident stressors, coupled with high interannual variability in amphibian abundances, can mask the extent and underlying mechanisms of drought impacts. We synthesized a decade (2009–2019) of regional-scale amphibian monitoring data (2273 surveys, 233 ponds, and seven species) from across California's Bay Area and used dynamic occupancy modeling to estimate trends and drivers of species occupancy. An extreme drought during the study period resulted in substantial habitat loss, with 51% of ponds drying in the worst year of drought, compared to <20% in pre-drought years. Nearly every species exhibited reduced breeding activity during the drought, with the occupancy of some species (American bullfrogs and California newts) declining by >25%. Invasive fishes and bullfrogs were also associated with reduced amphibian occupancy, and these taxa were locally extirpated from numerous sites during drought, without subsequent recovery– suggesting that drought may present an opportunity to remove invaders. Despite a historic, multi-year drought, native amphibians rebounded quickly to pre-drought occupancy levels, demonstrating evidence of resilience. Permanent waterbodies supported higher persistence of native species during drought years than did temporary waterbodies, and we therefore highlight the value of hydroperiod diversity in promoting amphibian stability.

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USGS2021

Noble gas signatures constrain oil-field water as the carrier phase of hydrocarbons occurring in shallow aquifers in the San Joaquin Basin, USA

Noble gases record fluid interactions in multiphase subsurface environments through fractionation processes during fluid equilibration. Water in the presence of hydrocarbons at the subsurface acquires a distinct elemental signature due to the difference in solubility between these two fluids. We find the atmospheric noble gas signature in produced water is partially preserved after hydrocarbons production and water disposal to unlined ponds at the surface. This signature is distinct from meteoric water and can be used to trace oil-field water seepage into groundwater aquifers. We analyse groundwater ( n = 30) and fluid disposal pond ( n = 2) samples from areas overlying or adjacent to the Fruitvale, Lost Hills, and South Belridge Oil Fields in the San Joaquin Basin, California, USA. Methane (2.8 × 10 −7 to 3 × 10 −2 cm 3 STP/cm 3 ) was detected in 27 of 30 groundwater samples. Using atmospheric noble gas signatures, the presence of oil-field water was identified in 3 samples, which had equilibrated with thermogenic hydrocarbons in the reservoir. Two (of the three) samples also had a shallow microbial methane component, acquired when produced water was deposited in a disposal pond at the surface. An additional 6 samples contained benzene and toluene, indicative of interaction with oil-field water; however, the noble gas signatures of these samples are not anomalous. Based on low tritium and 14 C contents (≤ 0.3 TU and 0.87–6.9 pcm, respectively), the source of oil-field water is likely deep, which could include both anthropogenic and natural processes. Incorporating noble gas analytical techniques into the groundwater monitoring programme allows us to 1) differentiate between thermogenic and microbial hydrocarbon gas sources in instances when methane isotope data are unavailable, 2) identify the carrier phase of oil-field constituents in the aquifer (gas, oil-field water, or a combination), and 3) differentiate between leakage from a surface source (disposal ponds) and from the hydrocarbon reservoir (either along natural or anthropogenic pathways such as faulty wells).

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USGS2021

Helium-carbon systematics of groundwaters in the Lassen Peak Region

Carbon dioxide emissions from active subaerial volcanoes represent 20–50% of the annual global volcanic CO 2 flux (Barry et al., 2014). Passive degassing of carbon from the flanks of volcanoes, and the associated accumulation of dissolved inorganic carbon (DIC) within nearby groundwater, also represents a potentially important, yet poorly constrained flux of carbon to the surface (Werner et al., 2019). Here we investigate sources and sinks of DIC in groundwaters in the Lassen Peak region of California. Specifically, we report and interpret the relative abundance and isotopic composition of helium ( 3 He, 4 He) and carbon ( 12 C, 13 C, 14 C) in 37 groundwater samples, from 24 distinct wells, collected between 20 and 60 km from Lassen Peak. Measured groundwater samples have air-corrected 3 He/ 4 He values between 0.19 and 7.44 R A (where R A = air 3 He/ 4 He = 1.39 × 10 −6 ), all in excess of the radiogenic production value (~0.05 R A ), indicating pervasive mantle-derived helium additions to the groundwater system in the Lassen Peak region. Stable carbon isotope ratios of DIC (δ 13 C) vary between −12.6 and − 27.7‰ (vs. VPDB). Measured groundwater DIC/ 3 He values fall in the range of 2.2 × 10 10 to 1.1 × 10 12 . Using helium and carbon isotope data, we explore several conceptual models to estimate surface carbon contributions and to differentiate between DIC derived from soil CO 2 versus DIC derived from external (slab and mantle) carbon sources. Specifically, if we use 14 C to identify soil-derived DIC (assuming decadal-to-centennial groundwater ages and a soil CO 2 14 C activity equal to that of the atmosphere), we calculate that a hypothetical external carbon source would have an apparent δ 13 C signature between −10.3 and − 59.3‰ (vs. Vienna Pee Dee Belemnite (VPDB)) and an apparent C/ 3 He between 7.0 × 10 9 and 1.0 × 10 12 . These apparent δ 13 C and C/ 3 He values are substantially isotopically lighter than and greater than canonical MORB values, respectively. We suggest that >95% of any external (non-soil-derived) DIC in groundwater must thus be non-mantle in origin (i.e., slab derived or assimilated organic carbon). We further investigate possible sources of external DIC to groundwater using two idealized conceptual approaches: a pure (unfractionated) source mixing model (after Sano and Marty, 1995) and a scenario that invokes fractionation due to calcite precipitation. Because the former model requires carbon contributions from an organic source component with unrealistically low δ 13 C (~ − 60‰), we suggest that the second scenario is more plausible. Importantly, however, we caution that all conceptual models are dependent on assumptions about initial 14 C activity. Thus, we cannot rule out the possibility that the true fraction of non-surface-derived DIC in these samples is lower or negligible, despite the pervasive mantle-derived He isotope signatures throughout the region. Following the 14 C approach to deconvolving sources of DIC, we determine that the maximum passive carbon flux could be up to ~2.2 × 10 6 kg/yr, which is lower than previous magmatic carbon flux estimates from the Lassen region (Rose and Davisson, 1996). We find that the passive dissolved carbon flux could represent a maximum of ~4–18% of the total Lassen geothermal CO 2 degassing flux (estimated to be ~3.5 × 10 7 kg/yr Rose and Davisson, 1996; Gerlach et al., 2008), which is still more than an order of magnitude smaller than soil gas CO 2 flux estimates (7.3–11 × 10 7 kg/yr) for nearby volcanoes (Sorey et al., 1998; Gerlach et al., 1999; Evans et al., 2002; Werner et al., 2014 ). We conclude that passive dissolved carbon fluxes should be combined with geothermal fluxes and soil gas fluxes to obtain a complete picture of volcanic carbon emissions globally. Our approach highlights the utility of measuring helium isotopes in concert with the full suite of noble gas abundances, tritium, δ 13 C and 14 C, which when interpreted together can be used to better elucidate the various sources of DIC in groundwater.

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USGS2021

Investigating the effect of enhanced oil recovery on the noble gas signature of casing gases and produced waters from selected California oil fields

In regions where water resources are scarce and in high demand, it is important to safeguard against contamination of groundwater aquifers by oil-field fluids (water, gas, oil). In this context, the geochemical characterisation of these fluids is critical so that anthropogenic contaminants can be readily identified. The first step is characterising pre-development geochemical fluid signatures (i.e., those unmodified by hydrocarbon resource development) and understanding how these signatures may have been perturbed by resource production, particularly in the context of enhanced oil recovery (EOR) techniques. Here, we present noble gas isotope data in fluids produced from oil wells in several water-stressed regions in California, USA, where EOR is prevalent. In oil-field systems, only casing gases are typically collected and measured for their noble gas compositions, even when oil and/or water phases are present, due to the relative ease of gas analyses. However, this approach relies on a number of assumptions (e.g., equilibrium between phases, water-to-oil ratio (WOR) and gas-to-oil ratio (GOR) in order to reconstruct the multiphase subsurface compositions. Here, we adopt a novel, more rigorous approach, and measure noble gases in both casing gas and produced fluid (oil-water-gas mixtures) samples from the Lost Hills, Fruitvale, North and South Belridge (San Joaquin Basin, SJB) and Orcutt (Santa Maria Basin) Oil Fields. Using this method, we are able to fully characterise the distribution of noble gases within a multiphase hydrocarbon system. We find that measured concentrations in the casing gases agree with those in the gas phase in the produced fluids and thus the two sample types can be used essentially interchangeably. EOR signatures can readily be identified by their distinct air-derived noble gas elemental ratios (e.g., 20 Ne/ 36 Ar), which are elevated compared to pre-development oil-field fluids, and conspicuously trend towards air values with respect to elemental ratios and overall concentrations. We reconstruct reservoir 20 Ne/ 36 Ar values using both casing gas and produced fluids and show that noble gas ratios in the reservoir are strongly correlated (r 2 = 0.88–0.98) to the amount of water injected within ~500 m of a well. We suggest that the 20 Ne/ 36 Ar increase resulting from injection is sensitive to the volume of fluid interacting with the injectate, the effective water-to-oil ratio, and the composition of the injectate. Defining both the pre-development and injection-modified hydrocarbon reservoir compositions are crucial for distinguishing the sources of hydrocarbons observed in proximal groundwaters, and for quantifying the transport mechanisms controlling this occurrence.

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USGS2021

Drivers of extreme water levels in a large, urban, high-energy coastal estuary – A case study of the San Francisco Bay

Reliable and long-term hindcast data of water levels are essential in quantifying return period and values of extreme water levels. In order to inform design decisions on a local flood control district level, process-based numerical modeling has proven an essential tool to provide the needed temporal and spatial coverage for different extreme value analysis methods. To determine the importance of different physical processes to the extreme water levels we developed a process-based numerical model (Delft3D Flexible Mesh) and applied it to simulate a large, urban, high-energy coastal estuary (the San Francisco Bay). The unstructured grid with 1D/2DH model elements, allows for efficient model simulations and therefore it was possible to simulate over 70 years between 1950 and 2019. Results show significant skill in reproducing observations for the entire modeled time period with an average root-mean-square error of 8.0 cm. A process-based modeling approach allows for the explicit in- and exclusion of different physical processes to quantify their importance to the extremes. For the 100-year still water level (SWL), tide (70%) and non-tidal residual (NTR) (25%) explain the majority of the simulated high water levels in the Bay relative to Mean Higher High Water (MHHW). However, closer to the Delta, local fluvial inflow increases in importance. For longer return periods, the importance of tide decreases and the importance of remote NTRs and fluvial inflow increases.

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USGS2021

Mercury exposure in mammalian mesopredators inhabiting a brackish marsh

Bioaccumulation of environmental contaminants in mammalian predators can serve as an indicator of ecosystem health. We examined mercury concentrations of raccoons ( Procyon lotor; n = 37 individuals) and striped skunks ( Mephitis mephitis ; n = 87 individuals) in Suisun Marsh, California, a large brackish marsh that is characterized by contiguous tracts of tidal marsh and seasonally impounded wetlands. Mean (standard error; range) total mercury concentrations in adult hair grown from 2015 to 2018 were 28.50 μg/g dw (3.05 μg/g dw; range: 4.46 – 81.01 μg/g dw) in raccoons and 4.85 μg/g dw (0.54 μg/g dw; range: 1.52 – 27.02 μg/g dw) in striped skunks. We reviewed mammalian hair mercury concentrations in the literature and raccoon mercury concentrations in Suisun Marsh were among the highest observed for wild mammals. Although striped skunk hair mercury concentrations were 83% lower than raccoons, they were higher than proposed background levels for mercury in mesopredator hair (1 – 5 μg/g). Hair mercury concentrations in skunks and raccoons were not related to animal size, but mercury concentrations were higher in skunks in poorer body condition. Large inter-annual differences in hair mercury concentrations suggest that methylmercury exposure to mammalian predators varied among years. Mercury concentrations of raccoon hair grown in 2017 were 2.7 times greater than hair grown in 2015, 1.7 times greater than hair grown in 2016, and 1.6 times greater than hair grown in 2018. Annual mean raccoon and skunk hair mercury concentrations increased with wetland habitat area. Furthermore, during 2017, raccoon hair mercury concentrations increased with the proportion of raccoon home ranges that was wetted habitat, as quantified using global positioning system (GPS) collars. The elevated mercury concentrations we observed in raccoons and skunks suggest that other wildlife at similar or higher trophic positions may also be exposed to elevated methylmercury bioaccumulation in brackish marshes.

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USGS2021

Seed production patterns of surviving Sierra Nevada conifers show minimal change following drought

Reproduction is a key component of ecological resilience in forest ecosystems, so understanding how seed production is influenced by extreme drought is key to understanding forest recovery trajectories. If trees respond to mortality-inducing drought by preferentially allocating resources for reproduction, the recovery of the stand to pre-drought conditions may be enhanced accordingly. We used a 20-year annual seed capture data set to investigate whether seed production by three tree genera commonly found in the Sierra Nevada ( Abies , Pinus , and Calocedrus ) was correlated with variation in local weather, which included an extreme drought spanning multiple years. We tested whether average seed production differed during the drought years, and whether annual seed counts could be explained by three weather variables: spring temperature, annual precipitation, and summer climatic water deficit (CWD). We fit models testing for four separate effects: (1) a priming year model (weather 1 year prior to reproductive bud initiation), (2) a bud initiation model (weather in the year of reproductive bud initiation), (3) a pollination year model (weather in the year of pollination), and (4) maturation year model (weather in the year of seed maturation). For genera with two-year reproductive cycles, the pollination and maturation models were combined. We found support for the summer CWD Abies maturation year model, which suggested higher seed outputs immediately following dry summer conditions. The spring temperature pollination year model was selected for Pinus , which suggested that seed output is higher following warm spring weather during pollination. The annual precipitation priming year model was selected for Calocedrus , which showed a negative association between seed production and wetter conditions two years prior to seed production. More parent tree basal area resulted in higher seed output for all genera, though the confidence intervals overlapped 0 for Calocedrus . Permutation tests sugested there was no systematic difference in mean seed production during the drought after accounting for live tree basal area, regardless of genus. These results highlight the variability in response across genera, and suggest that the influence of seed production on forest recovery following drought-related mortality may depend on affected species and the timing of the mortality event within the masting cycle. A greater understanding of species-level masting to drought stress is needed to more precisely predict community-level recovery following drought.

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USGS2021

Responses of migratory amphibians to barrier fencing inform the spacing of road underpasses: A case study with California tiger salamanders (Ambystoma californiense) in Stanford, CA, USA

Migratory amphibians are at high risk of negative impacts when roads intersect their upland and breeding habitats. Road mortality can reduce population abundance, survivorship, breeding, recruitment, and probability of long-term persistence. Increasingly, environmental planners recommend installation of under-road tunnels with barrier fencing to reduce mortality and direct amphibians towards the passages. Often, the permeability of these barrier and passage systems to amphibian population movements are unknown. We studied the movements of California tiger salamanders (CTS: Ambystoma californiense ) in relation to solid and mesh barrier fencing attached to a 3-tunnel system between upland and breeding habitats in Stanford, California. We deployed active-trigger cameras along the fencing, used pattern recognition software to identify individuals by their unique spot patterns, and calculated individual salamander movement distances, speed, direction changes, and “success” at reaching the tunnel system. We found that migrating adult CTS moved an average of 40 m along barrier fencing before turning back into the habitat or “giving-up”. This short distance, in comparison to long migratory movements, may be explained by the orientation mechanisms salamanders use to reach their breeding sites. The probability CTS found a passage decreased rapidly with increasing distance from the tunnel system, particularly if individuals turned the “wrong” way after encountering the fence. Salamanders changed directions more often and spent more time along mesh fencing. Our results suggest that a maximum of 12.5 m between passages along CTS migration routes should allow approximately 90% of adult salamanders to encounter road crossings. Additionally, use of solid fencing or a visual barrier on mesh fencing may help to lead salamanders to passages most efficiently. These considerations can assist those seeking to design effective road mitigation for CTS and other migratory amphibians.

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USGS2021

The trajectory of soil development and its relationship to soil carbon dynamics

It has been postulated that the amount of soil organic carbon (SOC) associated with soil minerals exhibits a threshold relationship in response to effective soil moisture (estimated as precipitation less evapotranspiration). To better characterize the role of moisture in influencing mechanisms of SOC storage during pedogenesis, we compare soils from two different chronosequence sites: the Santa Cruz and Mattole River marine terraces that together form a soil age-by-climate gradient (i.e., climo-chronosequence). Our results demonstrate how variation in the effective soil moisture may drive soil development along divergent pedogenic trajectories, resulting in variations in the form and depth distribution of secondary weathering products. In particular, the residual metals Fe and Al are directly related to the type of secondary minerals that accumulate during weathering, and these variations are coupled to differences in the storage and long-term preservation of SOC both within and between soils. Over time, these differences in soil development may lead to ‘pedogenic thresholds’ that further differentiate soil characteristics and influence SOC dynamics. In this case, the pedogenic threshold takes the form of clay-rich argillic horizons that once formed, inhibit aqueous transport, decouple shallow and deep soil environments, and potentially limit SOC inputs and increase microbial recycling in deep soils. Our data suggest argillic horizon development is favorable in the drier Santa Cruz soils, where kaolinite is the dominant secondary weathering product. In contrast, greater available moisture in soils of the Mattole chronosequence drive a different weathering trajectory characterized by the accumulation of more amorphous secondary minerals. As a result, the Mattole soils and do not exhibit argillic horizon development but are instead characterized by greater accumulation of SOC across all depths sampled. Overall, our results illustrate how the interaction of climate (i.e., moisture) and time may shape the trajectory of soil development and the dynamics of SOC storage and preservation.

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USGS2021

The impacts of the 2015/2016 El Niño on California's sandy beaches

The El Niño Southern Oscillation is the most dominant mode of interannual climate variability in the Pacific. The 2015/2016 El Niño event was one of the strongest of the last 145 years, resulting in anomalously high wave energy across the U.S. West Coast, and record coastal erosion for many California beaches. To better manage coastal resources, it is critical to understand the impacts of both short-term climate variability and long-term climate impacts across the varied coastal settings of California. This study is the first to quantify the coastal response for one of the strongest El Niño events in the historical record across the coast of California through the analysis of nearshore wave conditions and seasonal beach changes for 8000 shore-normal transects. Through the analysis of pre- and post- El Niño LiDAR, we find that that central and northern California experienced the most sandy beach shoreline retreat/erosion during the El Niño winter, with a mean of 45.7 m of erosion (96% of beaches) in central California, a mean of 25.5 m of erosion (89% of beaches) in northern California, and a mean of 9.7 m of erosion (79% of beaches) in southern California. These patterns are compared to LiDAR and satellite-derived long-term shoreline change rates, in which southern California and central California beaches are moderately accreting, while northern California is eroding at an average of 79 cm per year. A significant correlation is found between cumulative wave energy flux and shoreline change during the El Niño winter across the state of California. Although local beach response during the El Niño winter was highly variable, heightened erosion was observed at river mouths and on the southern side of structures impeding littoral drift, with accretion observed on the northern side of these structures. These erosional patterns, driven by a northerly wave direction anomaly, contrast those of classic El Niño events such as the 1982–.83 and 1997–98 events, where more southerly storm tracks and southerly wave directions were key factors controlling shoreline behavior, and may indicate a shift in El Niño storm patterns driven by climate change.

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USGS2021

The marine terraces of Santa Cruz Island, California: Implications for glacial isostatic adjustment models of last-interglacial sea-level history

Glacial isostatic adjustment (GIA) models hypothesize that along coastal California, last interglacial (LIG, broadly from ~130 to ~115 ka) sea level could have been as high as +11 m to +13 m, relative to present, substantially higher than the commonly estimated elevation of +6 m. Areas with low uplift rates can test whether such models are valid. Marine terraces on Santa Cruz Island have previously been reported to occur at low (<10 m) elevations, but ages of many such localities are not known. Using lidar imagery as a base, marine terraces on Santa Cruz Island were newly mapped, elevations were measured, fossils were collected for U-series dating (corals), strontium isotope compositions and amino acid geochronology (mollusks), and paleozoogeography (all taxa). Sr isotope compositions of mollusks from the highest of three marine terraces give ages of ~2.5 Ma to 1.9 Ma, along with Pliocene ages, from shells interpreted to be reworked. U-series ages of corals from the western part of the island indicate that low-elevation terraces north of the Santa Cruz Island fault correlate to the LIG. Where corals are lacking, amino acid ratios and faunal aspects support terrace correlation to the LIG high stand of sea. Elevations of most terrace localities north of the east-west trending Santa Cruz Island fault, in both the western and eastern parts of the island, range from 5.75 m to 8 m above sea level, well below the modeled paleo-sea-level range. Subsidence is ruled out as a mechanism for explaining the lower-than-modeled elevations, because higher-elevation terraces are present along much of the Santa Cruz Island coast north of the fault, indicating long-term tectonic uplift. The low elevations of the LIG terrace fragments are, however, consistent with a low rate of uplift derived from the higher, ~2.5–1.9 Ma terrace. A number of other localities on the Pacific Coast, also dated to the LIG, have marine terrace elevations below the modeled level. GIA models may have overestimated last interglacial sea level by a substantial amount and need to be revised if used for forecasts for future sea-level rise.

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USGS2021

Geomorphic history of Lake Manix, Mojave Desert, California: Evolution of a complex terminal lake basin

The US Environmental Protection Agency's short-term freshwater effluent test methods include a fish ( Pimephales promelas ), a cladoceran ( Ceriodaphnia dubia ), and a green alga ( Raphidocelis subcapitata ). There is a recognized need for additional taxa to accompany the three standard species for effluent testing. An appropriate additional taxon is unionid mussels because mussels are widely distributed, live burrowed in sediment and filter particles from the water column for food, and exhibit high sensitivity to a variety of contaminants. Multiple studies were conducted to develop a relevant and robust short-term test method for mussels. We first evaluated the comparative sensitivity of two mussel species ( Villosa constricta and Lampsilis siliquoidea ) and two standard species ( P. promelas and C. dubia ) using two mock effluents prepared by mixing ammonia and five metals (cadmium, copper, nickel, lead, and zinc) or a field-collected effluent in 7-day exposures. Both mussel species were equally or more sensitive (more than two-fold) to effluents compared with the standard species. Next, we refined the mussel test method by first determining the best feeding rate of a commercial algal mixture for three age groups (1, 2, and 3 weeks old) of L. siliquoidea in a 7-day feeding experiment, and then used the derived optimal feeding rates to assess the sensitivity of the three ages of juveniles in a 7-day reference toxicant (sodium chloride [NaCl]) test. Juvenile mussels grew substantially (30%–52% length increase) when the 1- or 2-week-old mussels were fed 2 ml twice daily and the 3-week-old mussels were fed 3 ml twice daily. The 25% inhibition concentrations (IC25s) for NaCl were similar (314–520 mg Cl/L) among the three age groups, indicating that an age range of 1- to 3-week-old mussels can be used for a 7-day test. Finally, using the refined test method, we conducted an interlaboratory study among 13 laboratories to evaluate the performance of a 7-day NaCl test with L. siliquoidea . Eleven laboratories successfully completed the test, with more than 80% control survival and reliable growth data. The IC25s ranged from 296 to 1076 mg Cl/L, with a low (34%) coefficient of variation, indicating that the proposed method for L. siliquoidea has acceptable precision. Environ Toxicol Chem 2021;40:3392–3409. © 2021 SETAC

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USGS2021

Exposure to domoic acid is an ecological driver of cardiac disease in southern sea otters

Harmful algal blooms produce toxins that bioaccumulate in the food web and adversely affect humans, animals, and entire marine ecosystems. Blooms of the diatom Pseudo-nitzschia can produce domoic acid (DA), a toxin that most commonly causes neurological disease in endothermic animals, with cardiovascular effects that were first recognized in southern sea otters. Over the last 20 years, DA toxicosis has caused significant morbidity and mortality in marine mammals and seabirds along the west coast of the USA. Identifying DA exposure has been limited to toxin detection in biological fluids using biochemical assays, yet measurement of systemic toxin levels is an unreliable indicator of exposure dose or timing. Furthermore, there is little information regarding repeated DA exposure in marine wildlife. Here, the association between long-term environmental DA exposure and fatal cardiac disease was investigated in a longitudinal study of 186 free-ranging sea otters in California from 2001 – 2017, highlighting the chronic health effects of a marine toxin. A novel Bayesian spatiotemporal approach was used to characterize environmental DA exposure by combining several DA surveillance datasets and integrating this with life history data from radio-tagged otters in a time-dependent survival model. In this study, a sea otter with high DA exposure had a 1.7-fold increased hazard of fatal cardiomyopathy compared to an otter with low exposure. Otters that consumed a high proportion of crab and clam had a 2.5- and 1.2-times greater hazard of death due to cardiomyopathy than otters that consumed low proportions. Increasing age is a well-established predictor of cardiac disease, but this study is the first to identify that DA exposure affects the risk of cardiomyopathy more substantially in prime-age adults than aged adults. A 4-year-old otter with high DA exposure had 2.3 times greater risk of fatal cardiomyopathy than an otter with low exposure, while a 10-year old otter with high DA exposure had just 1.2 times greater risk. High Toxoplasma gondii titers also increased the hazard of death due to heart disease 2.4-fold. Domoic acid exposure was most detrimental for prime-age adults, whose survival and reproduction are vital for population growth, suggesting that persistent DA exposure will likely impact long-term viability of this threatened species. These results offer insight into the pervasiveness of DA in the food web and raise awareness of under-recognized chronic health effects of DA for wildlife at a time when toxic blooms are on the rise.

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USGS2021

The tide turns: Episodic and localized cross-contamination of a California coastline with cyanotoxins

The contamination of coastal ecosystems from a variety of toxins of marine algal origin is a common and well-documented situation along the coasts of the United States and globally. The occurrence of toxins originating from cyanobacteria along marine coastlines is much less studied, and little information exists on whether toxins from marine and freshwater sources co-occur regularly. The current study focused on the discharge of cyanotoxins from a coastal lagoon (Santa Clara River Estuary) as a consequence of an extreme tide event (King Tides; December 3–5, 2017) resulting in a breach of the berm separating the lagoon from the ocean. Monthly monitoring in the lagoon throughout 2017 documented more than a dozen co-occurring cyanobacterial genera, as well as multiple algal and cyanobacterial toxins. Biotoxin monitoring before and following the King Tide event using Solid Phase Adsorption Toxin Tracking (SPATT) in the lagoon and along the coast revealed the co-occurrence of microcystins, anatoxin, domoic acid, and other toxins on multiple dates and locations. Domoic acid was ubiquitously present in SPATT deployed in the lagoon and along the coast. Microcystins were also commonly detected in both locations, although the beach berm retained the lagoonal water for much of the year. Mussels collected along the coast contained microcystins in approximately half the samples, particularly following the King Tide event. Anatoxin was observed in SPATT only in late December, following the breach of the berm. Our findings indicate both episodic and persistent occurrence of both cyanotoxins and marine toxins may commonly contaminate coastlines in proximity to cyanobacteria-laden creeks and lagoons.

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USGS2021

Acute mortality in California tiger salamander (Ambystoma californiense) and Santa Cruz long-toed salamander (Ambystoma macrodactylum croceum) caused by Ribeiroia ondatrae (Class: Trematoda)

In early September 2019, a morbidity and mortality event affecting California tiger salamanders ( Ambystoma californiense ) and Santa Cruz long-toed salamanders ( Ambystoma macrodactylum croceum ) in late stages of metamorphosis was reported at a National Wildlife Refuge in Santa Cruz County, California, U.S.A. During the postmortem disease investigation, severe integumentary metacercarial (Class: Trematoda) infection, associated with widespread skin lesions, was observed. Planorbid snails collected from the ponds of the refuge within seven days of the mortality event were infected with Ribeiroia ondatrae, a digenetic trematode that can cause malformation and death in some amphibians. We suggest sustained seasonal high-water levels due to active habitat management along with several years of increased rainfall led to increased bird visitation, increased over-wintering of snails, and prolonged salamander metamorphosis, resulting in a confluence of conditions and cascading of host-parasite dynamics to create a hyper-parasitized state.

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USGS2021

Zircon geochronology and geochemistry of Quaternary rhyolite domes of the Coso volcanic field, Inyo County, California

The Quaternary Coso volcanic field (CVF) is a compositionally bimodal volcanic field located within a releasing bend along the eastern range-front Sierra Nevada fault zone in California's southern Owens Valley. The erupted products of CVF silicic magmatism since ~1 Ma comprise 38 high-silica rhyolite domes, with the volumetric majority (~99%) of rhyolite emplaced within the past ~300 ka. The CVF hosts an economically important geothermal field driven by heat associated with a shallow (~5 km) igneous intrusion. The CVF is potentially an immature analog to the nearby Long Valley system, which culminated in generation and eruption of the voluminous and widespread Bishop Tuff. As such, the CVF represents a considerable volcanic hazard, making a detailed understanding of the eruptive history and pre-eruptive conditions of the system critically important. We present uranium-series isochron dates from zircon ± allanite crystal surfaces and zircon trace element geochemical data on the youngest 17 rhyolite domes at Coso, which represent ~60% (by volume) of the silicic magma erupted by the system. These data suggest: (1) a shorter emplacement duration than previously recognized for these domes, with a duration of 20 ± 5 ka; (2) 4 shorter-duration eruption pulses within this interval, all of which occur during the marine isotope stage (MIS) 5 interglacial period; (3) an uptick in the volume of CVF magma erupted between ~200 ka and ~ 78 ka relative to that emplaced over the lifetime of the system; (4) near-coeval eruption of geochemically distinct magma in close geographic proximity, either sourced from different portions of the same magma system at depth or from discrete, uncommunicating bodies; (5) ambiguity with respect to whether or not CVF magmatism is time-predictable, as previously suggested, or erupted as a series of punctuated episodes; (6) no rhyolite volcanism in the past ~78 kyr.

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USGS2021

Long-term year-round observations of magmatic CO2 emissions on Mammoth Mountain, California, USA

Diffuse emission of magmatic CO 2 is one of the main indicators of volcanic unrest at Mammoth Mountain, but the presence of deep seasonal snowpack at the site has hindered year-round CO 2 flux observations. A permanent eddy covariance station was established at the largest area of diffuse CO 2 degassing on Mammoth Mountain (Horseshoe Lake tree kill) that measured CO 2 fluxes ( F c ) and meteorological parameters on a half-hourly basis. From July 22, 2014 to May 24, 2020, F c ranged from −35 to 10,546 g m −2 d −1 . F c decreased on average by 53% over the study period, tracking the long-term decline in CO 2 emissions following the last major increase that occurred at the Horseshoe Lake tree kill area from 2009 to 2011. Statistical and spectral analyses were applied to the F c and ancillary meteorological parameter time series to understand (1) relationships between these parameters, (2) their dominant periodicities, and (3) changes in F c that may be unexplained by meteorological forcing. Variations in detrended F c ( F cdt ) were most strongly correlated with wind direction and atmospheric temperature, followed by atmospheric pressure on diurnal to annual time scales, but wind direction likely exerted the most direct control on F cdt . Comparison of the smoothed (180-d span) F cdt time series to the time series of average-daily snow water equivalent measured ~1 km away suggested that snowpack may have suppressed CO 2 emissions. No evidence of a change in CO 2 emissions related to the last major seismic swarm beneath Mammoth Mountain on February 2–18, 2014 was observed.

California↗

USGS2021

Emergence and molecular characterization of pigeon Paramyxovirus-1 in non-native Eurasian collared doves (Streptopelia decaocto) in California, USA

Eurasian collared doves ( Streptopelia decaocto ) were introduced into Florida in the 1980s and have since established populations throughout the continental United States. Pigeon paramyxovirus-1 (PPMV-1), a species-adapted genotype VI Avian orthoavulavirus 1 , has caused periodic outbreaks among collared doves in the U.S. since 2001 with outbreaks occasionally involving native doves. In California, PPMV-1 mortality events were first documented in Riverside County in 2014 with subsequent outbreaks in 23 additional counties from southern to northern California between 2015 and 2019. Affected collared doves exhibited torticollis and partial paralysis. Pale kidneys were frequently visible on gross necropsy (65.4%; 51/78) while lymphoplasmacytic interstitial nephritis often with acute tubular necrosis (96.0%; 24/25) and pancreatic necrosis (80.0%; 20/25) were common findings on histopathology. In total, PPMV-1 was confirmed by rRT-PCR and sequence analysis from oropharyngeal and/or cloacal swabs in 93.0% (40/43) of the collared doves tested from 16 California counties. In 2017, Avian orthoavulavirus 1 was confirmed in a native mourning dove ( Zenaida macroura ) found dead during a PPMV-1 outbreak in collared doves by rRT-PCR from formalin-fixed paraffin-embedded (FFPE) tissues, after the initial rRT-PCR from swabs failed to detect the virus. Molecular sequencing of the fusion protein of isolates collected from collared doves during outbreaks in 2014, 2016, and 2017 identified two distinct subgenotypes, VIa and VIn. Subgenotype VIn has been primarily isolated from collared doves in the southern U.S., while VIa has been isolated from mixed avian species in the northeastern U.S., indicating two independent introductions into California. While populations of collared doves are not expected to be substantially impacted by this disease, PPMV-1 may pose a threat to already declining populations of native columbids. This threat could be assessed by monitoring native and non-native columbids for PPMV-1. Based on our study, swab samples may not be sufficient to detect infection in native columbids and may require the use of non-traditional diagnostic approaches, such as FFPE tissues, to ensure virus detection.

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