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Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

At least 1,765 records · Page 98Linked to original sources
USGS2026

Improving offshore 3D splay fault geometries and slip histories using seismic data reprocessing and structural modeling

The goal of this project as written in the CRESCENT seed grant proposal was as follows: 1) reprocess selected profiles along strike from 45° to 48°N from the CASIE21 crustal-scale seismic data to obtain higher-resolution and higher-quality imaging of the uppermost 1-2 km of the accretionary wedge; 2) convert high-resolution USGS sparker seismic data from the time to depth domain to constrain near-surface fault geometries; 3) use kinematic modeling in the MOVE software to derive individual fault slip rates and per-event-displacements; and 4) work with the CFM group to create updated 3D models of identified faults based on the new data sources. At this stage, we have begun the reprocessing of the CASIE21 seismic reflection data (Carbotte et al., 2023). The time-migration reprocessing of the CASIE21 dataset has improved imaging of the near-surface structure by incorporating usable frequencies up to ~220 Hz, in contrast to the ~50 Hz maximum usable content in the currently available pre-stack depth migrated (PSDM) profiles (Fig. 1C). An example of the image quality gained through reprocessing is shown in Fig. 1, where the dominant wavelength of each reflector is reduced to ~10 m (Fig. 1B) from ~20 m in the existing PSDM product (Fig. 1A). The reprocessing work is still currently in progress. While the imaging in the shallow section has been much improved, reprocessing below the first multiple is still needed to create a seamless image from the plate boundary to the surface.

Final Report↗
USGS2026

Extrinsic factors similarly affect nest survival of a threatened shorebird in natural and human-created habitats

Knowledge of factors that influence nest survival can inform effective conservation management for imperiled avian species. Habitat availability and quality are common priorities of conservation efforts, and climate and interspecific associations can also affect survival rates. In the lower Platte River system of eastern Nebraska, USA, Piping Plovers ( Charadrius melodus , hereafter plovers) nest on river sandbars and different types of human-created off-river sites (i.e., sand and gravel mines, housing developments, and transitional sites) that are unique within the Northern Great Plains breeding population. However, off-river habitat may not be suitable for plover nesting long-term because of reduced habitat availability on both river sandbars and off-river sites. We evaluated plover nest survival at off-river and sandbar sites using data from 2008 to 2023 (n = 285). In addition, we examined the effects of extreme temperatures, proximity to conspecific and Interior Least Tern ( Sternula antillarum athalassos , hereafter tern) nests, and temporal factors on nest survival. Plover nest survival did not differ between off-river sites and sandbars or amongst different off-river site types. Daily nest survival was 0.9818 (95% CI = 0.9729–0.9878) from 2008 to 2013 (unexclosed; n = 87) and 0.9950 (0.9918–0.9970) from 2014 to 2023 (exclosed; n = 198). Nest survival increased with the proportion of above average temperature days, increased with proximity to neighboring tern nests, and decreased with later nest initiation dates. Therefore, prioritizing early season nests, recognizing the benefits terns provide to plover nest survival, and monitoring the effect of climatic trends may aid future conservation efforts. Finally, as nest survival at off-river sites is comparable to sandbars, the predicted decline of habitat provided at off-river sites may reduce the overall breeding productivity and abundance of plovers in the lower Platte River system with ramifications to broader population viability.

Nebraska↗
USGS2026

King Rails in southeastern Arkansas are majority resident

King Rails ( Rallus elegans ), a declining species of secretive marsh bird, have a mixed migratory strategy, with some individuals migrating and some being year-round residents. Determining the distribution of migratory versus resident King Rails is critical to guiding habitat management and assessing risks to populations. We examined the migratory status of adult King Rails at the Choctaw West Wildlife Management Area in southeastern Arkansas, the only known site in Arkansas with multiple breeding pairs. Of the 23 adult King Rails we tagged in 2022 and 2023, two birds migrated away from the local area, one in each year. One migrated 145 km, and the other 450 km. Our findings suggest that the line between the migratory and resident range of Arkansas King Rails could be north of our site.

Arkansas↗
USGS2026

Columbia Basin pygmy rabbit recovery planning through structured decision making

The endangered Columbia Basin pygmy rabbit (CBPR) faces multiple threats, particularly increasing risk of larger and more intense wildfires due to climate change, emerging disease, and sagebrush habitat loss due to agriculture and development. Through the use of conservation breeding, the CBPR wild population grew from a low of 16 individuals captured in 2001 to over 100 individuals in two subpopulations in 2024. However, these subpopulations are geographically proximate, with potential risk that both subpopulations could be affected by a single wildfire or disease event. Additionally, a succession of setbacks in the breeding program has prompted a natural re-evaluation point for the CBPR conservation program. We undertook a structured decision-making (SDM) process with participants from both Washington Department of Fish and Wildlife (WDFW) and US Fish and Wildlife Service (USFWS) to develop a strategy that is sustainable and implementable for guiding management in the coming decades across the range of the CBPR, taking into account changing conditions and updated information. A population model that incorporated both demographic and high impact event uncertainties was developed to test how alternative strategies – defined by conservation breeding program, vaccination, and translocation components – affect CBPR population growth and cost objectives. Based on analysis of the model results, we identified the following actions that appear to have the greatest potential to allow WDFW and USFWS to meet their conservation objectives for CBPR: Continue conservation breeding program, and possibly expand to include an island subpopulation (an isolated, unfenced area that can serve as a source for rabbits while requiring fewer management inputs) Continue Rabbit Hemorrhagic Disease Virus (RHDV2) annual vaccinations in both breeding and wild populations When juveniles are available for translocation, prioritize recovery areas that are in the establishing phase In addition, while not analyzed explicitly in the model, discussions during the SDM process led to the identification of the following actions, which the group considered to have potential to benefit the CBPR either directly or indirectly: Increase the amount of suitable habitat available to pygmy rabbits Increase protections for existing and potential recovery areas Design future monitoring to better estimate survival and reproduction, with an emphasis on understanding how these vital rates vary between wild and semi-captive individuals, between vaccinated and unvaccinated individuals, and as a function of habitat factors

BioRxiv↗
USGS2026

A genomic tool to tackle cryptic diversity demonstrates the potential for off-target use of GT-seq panels

A comprehensive understanding of life history is vital to successful species conservation and management. When different life history stages are accompanied by considerable morphological or cryptic variation, such as the egg and larval phases exhibited by most fishes, genomic tools are essential for identifying species so that early-life ecology questions can be studied. Genotyping-in-thousands by sequencing (GT-seq) has recently emerged as a targeted and efficient approach for species identification. We leveraged existing genomic and transcriptomic data to develop a GT-seq panel capable of differentiating the members of the Coregonus artedi complex, a radiation of salmonids in the Laurentian Great Lakes whose members are indistinguishable with mitochondrial DNA barcoding loci and are the focus of bi-national conservation initiatives. Our panel of 494 loci was able to assign fishes in the C. artedi complex to species and lake. We examined cross-amplification in other coregonines with overlapping distributions and found that congeneric Lake Whitefish ( C. clupeaformis ) cross-amplified at 94% of loci and confamilial Round and Pygmy Whitefish ( Prosopium spp.) cross-amplified at 42% and 38% of loci, respectively. We adapted bioinformatic probes to account for Prosopium -specific variants including 22 new SNPs and developed a whitelist of 428 SNPs capable of distinguishing these whitefishes. Finally, we demonstrated performance by identifying 3,066 coregonine larvae and juveniles collected in spring 2019-2021 from Lake Superior. These results hold promise for future insights into the species-specific ecology of early life coregonines and demonstrate the flexibility of GT-seq panels, which may cross-amplify hundreds of informative genome-wide loci in related taxa.

BioRxiv↗
USGS2026

Distributions of host heterogeneity in susceptibility show signatures of pathogen geographic structure in an insect baculovirus

Segregated variation between populations is a fundamental evolutionary process leading to parasite specialization, yet the resulting impacts on infection heterogeneity within populations are theoretically and empirically understudied. We asked whether the distribution of host susceptibility to infection within populations carries the signatures of geographic structure from pathogen local adaptation, maladaptation, or generalism in a nuclear polyhedrosis virus that infects the Gulf Fritillary butterfly Dione vanillae . For this virus, there is genetic support for two geographically distinct groups within San Diego County, based on whole genome sequencing of 16 virus isolates. Reciprocal laboratory infections showed evidence of two contrasting viral life history strategies: a ‘generalist’ phenotype that consistently infected variable hosts and a ‘specialist’ that performed slightly better in its local host population. As predicted by our theoretical model, the more consistent infection displayed by the generalist across populations corresponded to lower heterogeneity in susceptibility within populations, modeled as gamma distribution. Furthermore, the generalist phenotype was collected over a wider geographic range despite having a tenfold-lower mean infection rate than the specialist, suggesting that a strategy of more consistent infection provides key fitness advantages across diverse host populations. Intriguingly, when there is variation in host susceptibility, interpretations of pathogen local adaptation are dose-dependent. Measuring infectivity across multiple doses enables estimation of the whole distribution of susceptibility, which provides more reliable identification of pathogen specialization to its local host. Our work demonstrates how trait distributions and not only their mean values can carry quantifiable signatures of eco-evolutionary processes in interspecific interactions.

BioRxiv↗
USGS2026

Abundance and movement patterns of fish accessing a reconnected Lake Erie coastal wetland: Insights from high-resolution sonar data

Coastal wetlands of the Laurentian Great Lakes are complex ecosystems that provide essential biological services, including providing habitat for a suite of fish species. As restoration efforts for these coastal wetlands increase, there is a need to characterize how well restored areas support the life histories of wetland, riverine, and lake fishes. Most traditional survey methods (e.g. 24hr trap netting, visual surveys) are implemented over periods of time that make it difficult to describe short-term fluxes in fish activity, especially in waters with difficult access or high turbidity. To address this gap, we used acoustic sonar technology to evaluate fish movement in a recently reconnected coastal wetland on the southern shore of western Lake Erie. Data collected over four years (2011-2014) indicated that the 10 ha wetland was continuously utilized by millions of fish, with discernible fluctuations in usage patterns observed on both daily and annual scales. These insights add to our understanding of how fish assemblages respond to restored coastal wetland habitats and can inform management decisions that may impact fish access (e.g. conduct management activities that may be disruptive to fish populations during periods of reduced utilization). Additional study of short-term fish movements using high-resolution sonar and other technologies will reveal patterns that may enhance the effectiveness of restoration and management efforts in Great Lakes coastal wetlands.

Lake Erie↗
USGS2026

Toxoplasma gondii: Challenges and perspectives in interpreting longitudinal seroprevalence data for a chronic parasitic infection

Toxoplasma gondii —the causative agent of toxoplasmosis—is a zoonotic pathogen of warm-blooded hosts. Infection causes mild-to-severe symptoms, including lethargy, fever, muscle pain, abortion, ocular disease, and encephalitis. Toxoplasma affects many vertebrate species, although felids are the only known definitive hosts. Seroprevalence in wildlife is often assessed using cross-sectional data, but few studies have tracked individual-level infections through time. We present a 4-yr dataset from white-tailed deer ( Odocoileus virginianus ) with repeated sampling of individuals that highlights challenges associated with assigning serostatus to individuals. Using a modified agglutination test, we observed seroconversion from seronegative to seropositive within individuals, as expected. Although toxoplasmosis is known to be a chronic disease, we also found reversion from seropositive to seronegative. Accurate assignment of serostatus is necessary for evaluating effects of infection on behavioral and physiologic outcomes. However, longitudinal data from individuals whose titers oscillate around the positive threshold present novel challenges. Therefore, we discuss the implications for assigning serostatus for chronic toxoplasmosis infection for three proposed approaches: 1) ever positive, always positive; 2) negative until positive and then always positive; and 3) status by sampling period. Clarifying which approach is used to assign serostatus when analyzing longitudinal T. gondii data may enable more meaningful comparisons across systems and studies.

Journal of Wildlife Diseases↗
USGS2026

Preface

Despite more than 50 years of research into the human dimensions of recreational f isheries, there is no textbook to present the theoretical grounding, operationalisation, and interpretation of the most elemental social components involved in fisheries management – namely, outcomes and trade-offs, behaviours (and antecedents or predictors of it), and the relationships among actors (fishers, f isher groups, managers, and management organisations). The objective of this edited volume is to reduce this knowledge gap. The book comprises four parts: (I) recreational fisheries as social-ecological systems, (II) disciplinary views of f ishers’ behaviours and outcomes, (III) engagement of fishers to support effective social science, and (IV) interdisciplinary integration for recreational fisheries management. Part I provides the general motivation for an interdisciplinary approach to understand recreational fisheries as coupled systems. Part II provides the foundations of various social science disciplines and highlights linkages and differences in the underlying theories and concepts used. Part III describes various qualitative and quantitative methods to study the social aspects of recreational fisheries in more detail, and Part IV suggests approaches to achieve standardisation and integration of different data streams, including how to link social and ecological data. The book chapters have been written by leading scholars of recreational fisheries science, involving social and economic scientists, political ecologists, and fisheries ecologists with a tradition in either applying human dimensions or working towards integration.

Book chapter↗
USGS2026

Colorado River basin

Flowing 1,450 miles through seven states and 30 Tribal Nations, the Colorado River is known as the lifeline of the Southwest. The river delivers water to 40 million people, irrigates approximately five million acres of farmland, supports a trillion-dollar economy, and supplies hydroelectric power to millions. Its drainage basin stretches across 250,000 square miles of diverse ecosystems, providing habitat for thousands of plant and wildlife species. However, increasing temperatures have altered the amount and timing of annual snowmelt and streamflow, exacerbating drought conditions and diminishing reservoir storage levels. Over time, less water becomes readily available for the communities, ecosystems, and economies that rely on the river’s consistent flow.

Arizona, California, Colorado, Nevada, New Mexico,↗
USGS2026

Conventional hydrothermal power-producing systems of the Great Basin, USA

As part of the update to the electric-grade conventional hydrothermal assessment of the Great Basin, USA, Monte Carlo analyses of identified resources within explored regions will be performed to make estimates of discovered resources and associated uncertainty. Analyses use conditional statistics where estimates are conditioned upon a hydrothermal favorability map, allowing for the likelihood that more resources exist in regions of higher hydrothermal favorability. For these analyses, a dataset of identified hydrothermal systems is compiled, and the new compilation is described herein. Recognizing that a single hydrothermal system may be developed with multiple power plants, and that the hydrothermal upflow zone may be several kilometers across with many measurements characterizing a single hydrothermal system, a procedure was developed and employed to create clusters of points (power plants, measurements, etc.) that are associated with a single system, and a new central point was defined as the best estimator of the center of the hydrothermal system. Hydrothermal systems were uniquely identified by grouping electric-grade hydrothermal measurements and operating power plants within a distance of 10 km. Groups that are >10 km apart are assumed to be different electric-grade hydrothermal systems. While 10 km was used as the threshold, most systems were significantly further apart, and most points within groups were typically within 5 km of each other. A well measurement was considered an electric-grade measurement of a hydrothermal system if it had two properties: a measured temperature of >85 °C and evidence of hydrothermal convection. Other points that were added to the dataset are locations of operating powerplants or locations that have been classified as an electric-grade hydrothermal resource by either the U.S Geological Survey (USGS) or the Great Basin Center for Geothermal Energy. After all points are assigned to systems, new points were computed with the goal of identifying the center of the throat of the hydrothermal upflow zone. If operating powerplants exist for a system, then the arithmetic average of all power plant locations is used. Otherwise, if USGS made an estimate, that location is used. In the absence of both powerplants or USGS estimates, the arithmetic average of all electric-grade measurement locations is used. An example is shown of how these newly compiled locations might be ranked for uncertainty analyses, where higher confidence is assumed if measured temperature is higher and there are many supporting measurements indicating an electric-grade resource. In summary, 28 systems have operating power plants, an additional 78 systems are known identified electric-grade hydrothermal resources, and 99 new systems were identified as probable electric-grade systems with varying levels of confidence. These 205 locations are shown as a function of a recent hydrothermal favorability map, conceptually illustrating the conditional statistics that can be used to make estimates of the undiscovered resources of the Great Basin. An accompanying data release provides summaries of developed capacity by system and USGS estimates of likely total capacity and associated uncertainty.

Arizona, California, Idaho, Nevada, Oregon, Utah↗
USGS2026

Science for drought response

Droughts impact water availability and quality, agriculture, energy production, ecosystem health, cultural resources, and wildfire risk. In an average year, nearly 15% of the US experiences significant drought, and in some recent years, drought conditions have impacted more than a third of the nation (U.S. Drought Monitor). The U.S. Geological Survey (USGS) Climate Adaptation Science Centers (CASCs) deliver actionable science to help land and resource managers prepare for, reduce the risk of, and recover from drought.

Report↗
USGS2026

Lower Eastern Shore Tributary summary: A summary of trends in tidal water quality and associated factors, 1985-2023

The Lower Eastern Shore Tributary Summary outlines change over time according to a suite of monitored tidal water quality parameters and associated potential drivers of those trends for the period 1985 – 2023, and provides a brief description of the current state of knowledge explaining these observed changes. Water quality parameters described include surface (above pycnocline) total nitrogen (TN), surface total phosphorus (TP), surface water temperature (WTEMP), spring (March-May) and summer (July-September) surface chlorophyll a, summer bottom (below pycnocline) dissolved oxygen (DO) concentrations, and Secchi disk depth (a measure of water clarity). Results for annual bottom TP, bottom TN, surface ortho-phosphate (PO4), surface dissolved inorganic nitrogen (DIN), surface total suspended solids (TSS), and summer surface DO concentrations are provided in an Appendix B. Drivers discussed include physiographic watershed characteristics, changes in TN, TP, and sediment loads from the watershed to tidal waters, expected effects of changing land use, and implementation of nutrient management and natural resource conservation practices. Factors internal to estuarine waters that also play a role as drivers are described including biogeochemical processes, physical forces such as winddriven mixing of the water column and increase in rainfall intensity and volume, and biological factors such as phytoplankton biomass and the presence of submersed aquatic vegetation. Continuing to track water quality response and investigating these influencing factors are important steps to understanding water quality patterns and changes in the Lower Eastern Shore. The intended audiences for this report include, but are not limited to, 1) technical managers within jurisdictions who use tidal water quality to inform management decisions, 2) local watershed organizations that are trying to understand these analyses and working to connect them to their local area(s), and 3) federal, state, and academic researchers. Figure 1 presents a conceptual model highlighting these intended audiences. The Tributary Summary documents are sources of readily available background for change over time in tidal water quality observed with monitoring data. They help answer questions related to water quality, show how landscape factors drive water-quality changes over time, provide support for management decisions that may alter water quality trends and living resources conditions, and highlight where there may be information or knowledge gaps.

Maryland, Virginia↗
USGS2026

Understanding flooding and channel dynamics along the Taiya River: Providing context for resource management

Flooding and channel change in the Taiya River Basin in recent decades have directly affected park infrastructure and cultural resources. The complexities of flooding and channel change are compounded by the changing sediment and flow regime from a changing climate and shrinking glaciers, which will continue to drive dynamic riverine change. Streamflow data and geomorphic interpretation helped us place these events in context to inform decision making that takes dynamic natural processes into account.

Alaska↗
USGS2026

Brewing change in the (glacier) percolation zone

Alaska's glaciers are losing mass at the fastest rate of any region globally, significantly affecting both the volume and distribution of water across the landscape. Though glaciers in the Alaska region (as defined by glaciologists this includes both Alaska and portions of adjacent Canada) range from sea level to nearly 6200 m (20,320 ft), the majority of glacier area in the Alaska region is concentrated between 900 and 2100 m (2950 to 6890 ft). Long term glacier monitoring in Alaska by the U.S. Geological Survey (USGS) Benchmark Glacier Project is on moderate-sized glaciers with distributions of glacier area in this elevation range. These are some of the longest in-situ records of glacier mass change in the world. The process-based understanding of glacier change on those “Benchmark Glaciers” is robust, but it is limited to the range of conditions present on those particular glaciers—at moderate elevations—where large amounts of melt water and rain pass through the glacier and into the downstream ecosystem on an annual basis.

Alaska↗
USGS2026

Intertidal community responses to perturbations along Alaska park coastlines

Nearshore ecosystems are highly productive zones with strong connections to both terrestrial and open ocean ecosystems. The rocky intertidal is a highly dynamic ecosystem and changes over a variety of spatial and temporal scales depending on the factors contributing to the change. Here we summarize how nearshore communities and species responded to several perturbations to intertidal communities within Alaska’s coastal national parks.

Alaska↗