Geology topics

Trey Simmons

Publications and source records attributed to Trey Simmons.

4 recordsLinked to original sources

USGS2026

Monitoring for the future of Central Alaska streams

Streams are good indicators of change and the health of watersheds. By monitoring stream chemical composition and the kinds of life they support, we can learn about how they are being stressed (by activities such as mining or climate change) or recovering from a stress (after restoration efforts). But Central Alaska watersheds and the natural stream conditions they produce are diverse. From long-term monitoring, and repeat measurements, we can start to understand the related baselines and fine-tune our understanding of changes.

Alaska↗

USGS2023

eDNA Metabarcoding Analyses of Diet in Yellow-Billed Loons of Northern Alaska

Environmental DNA is a burgeoning tool used to address wide-ranging scientific questions, including determining diets of difficult-to-sample predators. Loons are large piscivorous diving birds that capture and consume prey underwater, making it nearly impossible to visually determine their diet via observation alone. Identifying species' diets is important for understanding basic life history traits, and revealing key prey species can clarify species' roles in complex trophic webs, aid in understanding population and community dynamics, and help identify critical habitat for protection. Current information about loon diet is largely anecdotal, and traditional non-observational methods for quantifying loon diet have limitations. Analysis of eDNA from loon feces may provide biologists with a non-invasive technique for determining diet without negative sampling effects, and with increased resolution as compared to other techniques. We surveyed lakes in two areas of northern Alaska for Yellow-billed Loons ( Gavia adamsii ). Loon fecal samples were collected opportunistically from latrine sites without disturbing any animals and analyzed using novel marker sets to determine loon species and diet. Fish species were detected in all fecal samples, the most common being Alaska blackfish ( Dallia pectoralis ), and ninespine stickleback ( Pungitius pungitius ). This research demonstrates that eDNA metabarcoding analyses of loon fecal samples can determine the specific loon species that deposited the feces and characterize the piscine portion of their diet with limited disturbance to the animals.

Alaska↗

USGS2020

Environmental DNA: An emerging tool for understanding aquatic biodiversity

Field surveys for aquatic organisms provide critical information that is important for robust resource management. However, such surveys are expensive and labor intensive, particularly in large, remote landscapes like those that characterize much of Alaska. Traditionally, characterizing aquatic biodiversity necessitated the physical capture and identification of individual organisms, which required that field crews have some level of expertise in identifying the species likely to be present. Many other limitations of surveys that rely on direct observation of aquatic organisms have been noted (Evans and Lamberti 2018). However, what if it were possible to identify all of the species present at a site without having to capture or even see them? While we are not there yet, the recent revolution in environmental DNA (eDNA) technology is bringing us closer to that goal (Thomsen and Willerslev 2014).

Alaska↗

USGS2018

Using redundant primer sets to detect multiple native Alaskan fish species from environmental DNA

Accurate and timely data regarding freshwater fish communities is important for informed decision-making by local, state, tribal, and federal land and resource managers; however, conducting traditional gear-based fish surveys can be an expensive and time-consuming process, particularly in remote areas, like those that characterize much of Alaska. To help address this challenge, we developed and tested five multi-species environmental DNA (eDNA) primer sets for the simultaneous detection of up to 37 target fish species in a single sample. Using these primer sets can reduce the cost and time needed to perform future studies of fish communities. Our results comparing multiple samples from multiple lakes and streams using multiple next-generation sequencing runs show the efficacy and reproducibility of these primers.

Alaska↗