Geology topics

Todd Esque

Publications and source records attributed to Todd Esque.

47 records · Page 3Linked to original sources

USGS2019

Arizona hedgehog cactus (Echinocereus triglochidiatus var. arizonicus)—A systematic data assessment in support of recovery

The Arizona hedgehog cactus ( Echinocereus triglochidiatus var . arizonicus ) is endemic to central Arizona in Gila and Pinal Counties, and has been federally listed as endangered by the U.S. Fish and Wildlife Service (FWS) since 1979. Mining, mineral exploration, and highway development have resulted in habitat degradation and loss of individual plants. Therefore, decreases in the population of the cactus are expected to continue. In response to a request from FWS to compile, evaluate, and synthesize data for the cactus, we identified and evaluated existing survey and monitoring data for the cactus and conducted a demographic analysis with suitable data. Systematic surveys for the Arizona hedgehog cactus did not begin until the late 1970s. Early surveys generally were anecdotal descriptions of cactus populations and precisely georeferenced records of individual cactus occurrence did not occur until global positioning systems were widely used. Much of the georeferenced data have been collected by consultants for mining operations, the Arizona Department of Transportation, the U.S. Forest Service, and independent surveyors. Occurrence records have been compiled by the Arizona Game and Fish Department Heritage Data Management System, but submission of these data may be incomplete, and the attributes reported have varied among the contributing entities. The compilation and management of survey data is essential for field-based evidence of the size, distribution, and range extent of the cactus. In support of consistency in future survey data collection, this report makes several suggestions for future surveys. Monitoring for the Arizona hedgehog cactus, defined as repeat observations of the status of cactus individuals, has been done by consulting companies for three mines. Demographic monitoring further involves marking individual cacti in consistently defined plots and recording the fate of each cacti through time, including birth, growth, reproduction, and death. We were able to use demographic monitoring data provided by two consulting companies to calculate survival and population growth rates, using several statistical approaches. Resulting models indicate that larger cacti, as measured by their number of stems, have greater survival rates. Larger individuals also had higher probability of producing more flowers. Small cacti had the lowest survivorship, with potentially only 15–20 percent reaching large size. Most populations monitored by the two companies were stable to increasing. However, there were differences in the growth rates among plots and some plots had negative population growth rates. The demographic monitoring data we used represented relatively dense populations of undisturbed cacti. Hence, overall positive population growth rates were not influenced by any large-scale disturbances. Previous analyses with cacti and other species suggest that more than 10 years of data are necessary to accurately forecast long-term population trajectories. As the monitoring intervals we evaluated were shorter, they represent short-term dynamics only. Several suggestions are made in the report to improve collection of monitoring data to support evidence-based estimates of demographic characteristics of the Arizona hedgehog cactus.

Arizona↗

USGS2019

Complex immune responses and molecular reactions to pathogens and disease in a desert reptile (Gopherus agassizii)

Immune function plays an important role in an animal's defense against infectious disease. In reptiles, immune responses may be complex and counterintuitive, and diagnostic tools used to identify infection, such as induced antibody responses are limited. Recent studies using gene transcription profiling in tortoises have proven useful in identifying immune responses to various intrinsic and extrinsic stressors. As part of a larger experiment with Mojave desert tortoises ( Gopherus agassizii ), we facilitated the transmission of the pathogenic bacteria, Mycoplasma agassizii (Myag), to naïve adults and measured innate and induced immune reactions over time. Specifically, we evaluated clinical condition, presence of Myag in the nasal/oral cavity, induced antibody responses specific to Myag, and measured molecular reactions (gene transcript profiles) in 15 captive tortoises classified as naïve, exposed, or infected and 14 wild tortoises for comparison. Myag was confirmed inside the nasal/oral cavity in exposed tortoises within 30–60 days of introduction to infected animals, yet we did not detect Myag specific induced antibody responses in these individuals until 420–595 days post exposure. Surprisingly, we found no overall differences in the gene transcript profiles between our experimental treatment groups throughout this study. This work highlights the complexities in assessing immune function and diagnosing pathogen related infections in tortoises and other reptiles.

Ecology and Evolution↗

USGS2019

Tools to understand seasonality in health: quantification of microbe loads and analyses of compositional ecoimmunological data reveal complex patterns in Mojave Desert Tortoise (Gopherus agassizii) populations

Using data from six wild Mojave Desert Tortoise ( Gopherus agassizii (Cooper, 1861)) populations, we quantified seasonal differences in immune system measurements and microbial load in the respiratory tract, pertinent to this species’ susceptibility to upper respiratory tract disease. We quantified bacteria-killing activity of blood plasma and differential leukocyte counts to detect trends in temporal variation in immune function. We used centered log-ratio (clr) transformations of leukocyte counts and stress that such transformations are necessary for compositional data. We tested animals for the potential pathogen Pasteurella testudinis Snipes and Biberstein, 1982 with a newly created quantitative polymerase chain reaction (qPCR) assay, as well as for the known respiratory pathogens Mycoplasma agassizii Brown et al., 2001 and Mycoplasma testudineum Brown et al., 2004. We found very little disease and suggest that P. testudinis is a prevalent, commensal microbe in these Mojave Desert Tortoise populations, and its quantification may be a tool to study natural fluctuations in microbe levels in Mojave Desert Tortoise respiratory tracts. Our analyses showed that both the potential for inflammatory responses and microbe levels are highest in the spring for healthy Mojave Desert Tortoises, when lymphocyte levels are lowest. The genetic and statistical tools that we used are easily applicable to other wildlife systems and provide the necessary data to quantify species-wide trends in health and test hypotheses pertinent to host–microbe dynamics.

Canadian Journal of Zoology↗

USGS2018

Spatial decision‐support tools to guide restoration and seed‐sourcing in the Desert Southwest

Altered disturbance regimes and shifting climates have increased the need for large‐scale restoration treatments across the western United States. Seed‐sourcing remains a considerable challenge for revegetation efforts, particularly on public lands where policy favors the use of native, locally sourced plant material to avoid maladaptation. An important area of emphasis for public agencies has been the development of spatial tools to guide selection of genetically appropriate seed. When genetic information is not available, current seed transfer guidelines stipulate use of climate‐based or provisional seed transfer zones, which serve as a proxy for local adaptation by representing climate gradients to which plants are commonly adapted. Despite this guidance, little emphasis has been placed on identifying best practices for deriving provisional seed zones or on incorporating predictions from future climate. We describe a flexible, multivariate procedure for deriving such zones that incorporates a broad range of climatic characteristics while accounting for covariation among climate variables. With this approach, we derive provisional seed zones for four regions in the Desert Southwest (the Mojave Desert, Sonoran Desert, Colorado Plateau, and Southern Great Basin). To facilitate future‐resilient restoration designs, we project each zone into its relative position in the future climate based on near‐term, RCP4.5 and RCP8.5 emissions scenarios. Although provisional seed zones are useful in a variety of contexts, there are also situations in which site‐specific guidance is preferable. To meet this need, we implement Climate Distance Mapper, an interactive decision‐support tool designed to help practitioners match seed sources with restoration sites through an accessible online interface. The application allows users to rank the suitability of seed sources anywhere on the landscape based on multivariate climate distances. Users can perform calculations for either the current or future climates. Additionally, tools are available to guide sample effort in regional‐scale seed collections or to partition the landscape into climate clusters representing suitable planting sites for different seed sources. Our tools and analytic procedures represent a flexible and reproducible framework for advancing native plant development programs in the Desert Southwest and beyond.

Ecosphere↗

USGS2018

Spatial sampling bias in the Neotoma paleoecological archives affects species paleo-distribution models

The ability to infer paleo-distributions with limited knowledge of absence makes species distribution modeling (SDM) a useful tool for exploring paleobiogeographic questions. Spatial sampling bias is a known issue when modeling extant species. Here we quantify the spatial sampling bias in a North American packrat midden archive and explore its impact on estimating paleo-distributions. We test whether (1) spatial sampling bias inherent in this macrofossil record can influence estimates of paleo-distributions, (2) this bias can alter the ability to measure shifts in distributions and climatic niche breadth from the Northgrippian subdivision of the Holocene (8.3 ka – 4.2 ka) to present day (1950–2000 yr), and (3) bias correction methods can improve estimates of paleo-distributions and analyses of range shifts and niche breadth. We estimate spatial sampling bias for the mid-Holocene period with a three-stage statistical model, each representing a hypothesized source of bias: fossil site availability, preservation and accessibility. This approach enables the use of SDM to evaluate three separate paleo-distributions calibrated on the packrat midden archive: those without bias correction (σ-naïve), those created with a standard method (σ-standard), and those created with a novel alternative (σ-modeled) incorporating the three-stage model of bias. We find that paleo-distributions modeled for the mid-Holocene without bias correction (σ-naïve) provided poor estimates of hindcast paleo-distributions, and that the σ-modeled correction method improved paleo-distributions for our six species with, on average, 50% higher overlap to hindcast distributions than σ-naïve paleo-distributions (σ-standard results fell between σ-naïve and σ-modeled).

Journal of Quaternary Science Reviews↗

USGS2018

Associating sex-biased and seasonal behaviour with contact patterns and transmission risk in Gopherus agassizii

Interactions between wildlife hosts act as transmission routes for directly transmitted pathogens and vary in ways that affect transmission efficiency. Identifying drivers of contact variation can allow both contact inference and estimation of transmission dynamics despite limited data. In desert tortoises, mating strategy, burrow use and seasonal change influence numerous behaviours and likely shape contact patterns. In this study, we ask to what extent tortoise contact behaviour varies between sexes and seasons, and whether space or burrow-use data can be used to infer contact characteristics consistent with those recorded by proximity loggers. We identified sex and season-biased contact behaviour in both wild and captive populations indicative of female-female avoidance and seasonal male mate-seeking behaviour. Space and burrow-use patterns were informative, but did not always predict the extent of sex or seasonal biases on contact. We discuss the implications these findings have for transmission patterns and disease mitigation in tortoise populations.

Behaviour↗

USGS2017

An assessment of food habits, prey availability, and nesting success of golden eagles within the Desert Renewable Energy Conservation Plan Area

Within the Desert Renewable Energy Conservation Plan area, which encompasses California’s Mojave Desert, development and operation of renewable energy facilities has the potential to impact golden eagle (Aquila chrysaetos) populations through loss of habitat and prey base. Developing an effective conservation strategy that aims to mitigate for such operations is necessary to lessen these impacts; however, this requires site-specific knowledge of how golden eagle productivity is influenced by variability in prey abundance. In this study, researchers studied the food habits, prey availability, and nesting success of golden eagles in the conservation plan area over two seasons (2014 and 2015). In addition, as part of a collaborative research effort funded by the U.S. Fish and Wildlife Service, the same research was conducted within the adjoining Mojave Desert ecoregion of southern Nevada; these research results are presented as well. To examine prey availability, researchers conducted nocturnal spotlight surveys along 140 fivekilometer transects. Diet selection was determined using motion-activated trail cameras and by collecting prey remains at 20 active nests. Nesting success was determined by conducting occupancy and reproductive assessment surveys within 50 historic breeding areas and evaluating camera data collected at active nests. Preliminary results indicate high spatial variability in prey species abundance and selection. Black-tailed jackrabbits (Lepus californicus) represented over half the available prey, as well as nearly half the prey species identified by nest cameras. Overall, nesting success was 47 percent. Productivity was 0.67 young per occupied breeding area, and mean brood size was 1.4 young per successful nest. No evidence was found indicating that camera installation caused nest failures or influenced eagle behavior for any sites. Results from this project are incorporated into a spatial demographic model linking prey availability and abundance to golden eagle productivity across a changing Mojave Desert landscape.

Report↗

USGS2017

Using science to inform management and improve biological conservation in the Desert Renewable Energy Conservation Plan

The Mojave and Colorado deserts of southern California have been viewed as vast wilderness since early exploration and, until recently, were considered the most untrammeled among western landscapes in the contiguous lower 48 states (United States Department of Agriculture 1893; Leu et al. 2008). However, the factors that define desert wilderness—small human population, temperature differentials that create unrelenting winds, low rainfall, and cloudless skies—are attractive for renewable energy development. The demand for clean, renewable energy is a national and regional priority and has increased demand for large-scale solar and wind farms in the deserts, particularly in California. The need to balance these national and state energy priorities with existing natural resource and land conservation policies has emerged as a landscape-scale land-use planning initiative known as the Desert Renewable Energy Conservation Plan (DRECP). One of the primary goals for the DRECP was to establish Development Focus Areas (DFAs) where high-quality renewable energy potential of up to 20 gigawatts (GW) could be implemented by the year 2040. DFAs were designed to provide expedited project approvals in locations where environmental impacts could be managed and mitigated, and proximity to transmission corridors provides for the efficient dissemination of energy to users. The DRECP also aims to identify protections for natural resources, recreation, and cultural resources. This plan identifies 37 covered species that receive special consideration in the DRECP. Among the special considerations are climate adaptation requirements, such as the ability to maintain population connectivity through wildlife corridors, while protecting several special recreation areas and 32,000 known cultural sites that are dispersed throughout the region. We evaluated several particular aspects of the DRECP design and process. In particular, we examined land designations in relation to published studies on Mohave ground squirrel (Xerospermophilus mohavensis) habitat and genetic diversity patterns of a suite of broadly distributed desert animal species. The squirrel and its habitat are of particular interest because the entire range of the squirrel is encompassed by the DRECP. We describe the framework of the DRECP, provide a case study of how the DRECP accommodates the needs of the Mohave ground squirrel and its habitat, illustrate DFAs in relation to the genetic diversity of a broad range of terrestrial biota, and conclude with some observations on how land-use issues were resolved across the landscape under various scenarios.

Conference Paper↗

USGS2016

Deserts

The deserts of California (Lead photo, Fig. 1) occupy approximately 38% of California’s landscape (Table 1) and consist of three distinct deserts: the Great Basin Desert, Mojave Desert, and Colorado Desert, the latter of which is a subdivision of the Sonoran Desert (Brown and Lowe 1980). The wide range of climates and geology found within each of these deserts result in very different vegetative communities and ecosystem processes and therefore different ecosystem services. In deserts, extreme conditions such as very high and low temperatures and very low rainfall result in abiotic factors (climate, geology, geomorphology, and soils) controlling the composition and function of ecosystems, including plant and animal distributions. This is in contrast to wetter and milder temperatures found in other ecosystems, where biotic interactions are the dominant driving force. However, despite the harsh conditions in deserts, they are home to a surprisingly large number of plants and animals. Deserts are also places where organisms display a wide array of adaptations to the extremes they encounter, providing some of the best examples of Darwinian selection (MacMahon and Wagner 1985, Ward 2009). Humans have utilized these regions for thousands of years, despite the relatively low productivity and harsh climates of these landscapes. Unlike much of California, most of these desert lands have received little high-intensity use since European settlement, leaving large areas relatively undisturbed. Desert landscapes are being altered, however, by the introduction of fire following the recent invasion of Mediterranean annual grasses. As most native plants are not fire-adapted, they Many do not recover, whereas the non-native grasses flourish. Because desert lands are slow to recover from disturbances, energy exploration and development, recreational use, and urban development will alter these landscapes for many years to come. This chapter provides a brief description of where the different deserts of California are located and their dominant vegetative communities. The abiotic factors that define these deserts and how these factors control vegetation and thus animal distribution among and within the various deserts are examined next. Following this section, ecosystem processes and iconic species of these deserts are discussed, followed by a concluding section on the future of these landscapes. The latter section will be mostly focused on the Mojave Desert, as it is both the largest California desert and also where most of the research on California deserts has occurred.

California↗

USGS2012

Seed dispersal and seed fate in Joshua tree (Yucca brevifolia)

Joshua tree ( Yucca brevifolia ) is a charismatic symbol of the Mojave Desert. Despite its familiarity, we know little about the reproduction of this species, including mechanisms of seed dispersal. Here we examine mechanisms of seed dispersal and resulting seed fate. We experimentally tracked fruit and seed removal and followed the fates of Joshua tree seeds using radioactive tracers. The majority of Joshua tree fruits monitored were taken directly from the tree canopy by white-tailed antelope squirrels, and seeds and fruits on the soil surface were quickly removed by animals. Rodents given seeds labeled with scandium-46 cached them between 0.1 cm and 4.1 cm deep. Seedling emergence was most common for seeds planted 1 cm deep, whereas seeds placed on the soil surface seldom germinated. Wind dispersal is unlikely because fruits and seeds lack adaptations for wind dispersal; wind speeds required to move Joshua tree seeds and fruits across the soil surface were higher than those typically found in the Mojave Desert. Further, rodents removed most seeds before abiotic burial was possible. We conclude that most Joshua tree seeds are dispersed by scatter hoarding by rodents, and that caches made by rodents are suitable sites for seedling emergence.

Mojave Desert↗

USGS2010

Supplementing seed banks to rehabilitate disturbed Mojave Desert shrublands: where do all the seeds go?

Revegetation of degraded arid lands often involves supplementing impoverished seed banks and improving the seedbed, yet these approaches frequently fail. To understand these failures, we tracked the fates of seeds for six shrub species that were broadcast across two contrasting surface disturbances common to the Mojave Desert—sites compacted by concentrated vehicle use and trenched sites where topsoil and subsurface soils were mixed. We evaluated seedbed treatments that enhance soil-seed contact (tackifier) and create surface roughness while reducing soil bulk density (harrowing). We also explored whether seed harvesting by granivores and seedling suppression by non-native annuals influence the success of broadcast seeding in revegetating degraded shrublands. Ten weeks after treatments, seeds readily moved off of experimental plots in untreated compacted sites, but seed movements were reduced 32% by tackifier and 55% through harrowing. Harrowing promoted seedling emergence in compacted sites, particularly for the early-colonizing species Encelia farinosa , but tackifier was largely ineffective. The inherent surface roughness of trenched sites retained three times the number of seeds than compacted sites, but soil mixing during trench development likely altered the suitability of the seedbed thus resulting in poor seedling emergence. Non-native annuals had little influence on seed fates during our study. In contrast, the prevalence of harvester ants increased seed removal on compacted sites, whereas rodent activity influenced removal on trenched sites. Future success of broadcast seeding in arid lands depends on evaluating disturbance characteristics prior to seeding and selecting appropriate species and seasons for application.

Mojave Desert↗