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Thomas J. O’Shea

Publications and source records attributed to Thomas J. O’Shea.

17 recordsLinked to original sources
USGS2020

Ambiguities in using telomere length for age determination in two North American bat species

The age of an animal, determined by time (chronological age) as well as genetic and environmental factors (biological age), influences the likelihood of mortality and reproduction and thus the animal’s contribution to population growth. For many long-lived species, such as bats, a lack of external and morphological indicators has made determining age a challenge, leading researchers to examine genetic markers of age for application to demographic studies. One widely studied biomarker of age is telomere length, which has been related both to chronological and biological age across taxa, but only recently has begun to be studied in bats. We assessed telomere length from the DNA of known-age and minimum known-age individuals of two bat species using a quantitative PCR assay. We determined that telomere length was quadratically related to chronological age in big brown bats ( Eptesicus fuscus ), although it had little predictive power for accurate age determination of unknown-age individuals. The relationship was different in little brown bats ( Myotis lucifugus ), where telomere length instead was correlated with biological age, apparently due to infection and wing damage associated with white-nose syndrome. Furthermore, we showed that wing biopsies currently are a better tissue source for studying telomere length in bats than guano and buccal swabs; the results from the latter group were more variable and potentially influenced by storage time. Refinement of collection and assessment methods for different non-lethally collected tissues will be important for longitudinal sampling to better understand telomere dynamics in these long-lived species. Although further work is needed to develop a biomarker capable of determining chronological age in bats, our results suggest that biological age, as reflected in telomere length, may be influenced by extrinsic stressors such as disease.

Journal of Mammalogy↗
USGS2018

United States bat species of concern: A synthesis

In 1994 the federal government designated 24 species or subspecies of bats in the United States (U.S.) and its territories as Category 2 candidates for listing as Endangered or Threatened under the U.S. Endangered Species Act. Category 2 was eliminated in 1996, but taxa previously receiving this designation were informally considered “species of concern”. Various state and federal agencies and conservation organizations assigned bat species of concern to more formal conservation categories. Some of the original 24 taxa designated as Category 2 candidates in 1994 were later listed as Endangered, whereas others were subject to refinements in knowledge of their taxonomy and distribution. The remaining 20 species of bats have the subjects of increased research efforts over the past two decades, and are the focus of this review. Two species occur in the U.S. Territories. All of the 18 mainland species ranges include areas west of the Mississippi River (15 are found primarily in western states), and 13 occur in California (72% of the 18 mainland species). In this review, we provide a comprehensive summary of the literature pertinent to the conservation designations, systematics, distribution, habitats, relative abundance, foraging, diet, roosting ecology, population ecology, and management of each of these 20 species. The species of concern are distributed among four families of bats. The Samoan flying fox (Pteropus samoensis) belong to the old-world family Pteropodidae. The California leaf-nosed bat (Macrotus californicus), red fruit bat (Stenoderma rufum), and Mexican long-tongued bat (Choeronycteris mexicana) are members of the new-world family Phyllostomidae. Three species belong to the cosmopolitan family Molossidae: the greater bonneted bat (Eumops perotis californicus), Underwood’s bonneted bat (Eumops underwoodi), and the big free-tailed bat (Nyctinomops macrotis). Most bat species of concern are in the globally distributed family Vespertilionidae: Townsend’s big-eared bat (Corynorhinus townsendii), Rafinesque’s big-eared bat (C. rafinesquii), spotted bat (Euderma maculatum), Allen’s big-eared bat (Idionycteris phyllotis), southeastern myotis (M. austroriparius), western small-footed myotis (Myotis ciliolabrum), long-eared myotis (M. evotis), eastern small-footed myotis (M. leibii), Arizona myotis (M. occultus), fringed myotis (M. thysanodes), cave myotis (M. velifer), long-legged myotis (M. volans), and Yuma myotis (M. yumanensis). An impressive amount of knowledge has accumulated about these species since their informal designation as species of concern, but this knowledge is unevenly distributed. Comparatively little research has been conducted on the Samoan flying fox and the red fruit bat over the past decade in tropical territories, nor on the Mexican long-tongued bat and Underwood’s mastiff bat in the southwestern U.S. Within temperate regions of the U.S., habitat use of two eastern species that roost in hollow trees or caves (southeastern myotis and Rafinesque’s big-eared bat) has been the focus of much research, as have aspects of the biology of cave-roosting and tree-roosting western species, particularly where information about management of forests, caves and abandoned mines can be used to benefit bat conservation. Comparatively less information has accrued about species that roost in rock crevices and high on cliff faces. Other major gaps in information are also identified. We anticipate that this review will help guide future research and conservation efforts directed at the bat species of concern.

Proceedings of the California Academy of Sciences,↗
USGS2017

Genetic mark–recapture improves estimates of maternity colony size for Indiana bats

Genetic mark–recapture methods are increasingly being used to estimate demographic parameters in species where traditional techniques are problematic or imprecise. The federally endangered Indiana bat Myotis sodalis has declined dramatically and threats such as white-nose syndrome continue to afflict this species. To date, important demographic information for Indiana bats has been difficult to estimate precisely using traditional techniques such as emergence counts. Successful management and protection of Indiana bats requires better methods to estimate population sizes and survival rates throughout the year, particularly during summer when these bats reproduce and are widely dispersed away from their winter hibernacula. In addition, the familial makeup of maternity colonies is unknown, yet important for understanding local and regional population dynamics. We had four objectives in this study. For the first two objectives we investigated the potential use of DNA from fecal samples (fecal DNA) collected at roosts to obtain genetically based mark–recapture estimates of 1) colony size and 2) survival rates, for an Indiana bat maternity colony in Indianapolis, Indiana. The third objective was to compare our genetically based colony-size estimates with emergence counts conducted at the same roost tree to evaluate the genetic mark–recapture method. Our fourth objective was to use fecal DNA to estimate levels of relatedness among individuals sampled at the roost. In the summer of 2008, we collected fecal pellets and conducted emergence counts at a prominent roost tree during three time periods each lasting 7 or 8 d. We genotyped fecal DNA using five highly polymorphic microsatellite loci to identify individuals and used a robust-design mark–recapture approach to estimate survival rates as well as colony size at the roost tree. Emergence count estimates at the roost tree ranged from 100 to 215, whereas genetic mark–recapture estimates were higher, ranging from 122 to 266 and more precise. Apparent survival was 0.994 (SE = 0.04) between sampling periods suggesting that few bats died or permanently emigrated during the course of the study. Relatedness estimates, r, between all pairs of individuals averaged 0.055 ranging from 0 to 0.779, indicating that most individuals were not closely related. We demonstrate here the promise of using fecal DNA to estimate demographic information for Indiana bats and potentially other bat species.

Journal of Fish and Wildlife Management↗
USGS2016

Multiple mortality events in bats: a global review

Despite conservation concerns for many species of bats, factors causing mortality in bats have not been reviewed since 1970. Here, we review and qualitatively describe trends in the occurrence and apparent causes of multiple mortality events (MMEs) in bats around the world. We compiled a database of MMEs, defined as cases in which ≥ 10 dead bats were counted or estimated at a specific location within a maximum timescale of a year, and more typically within a few days or a season. We tabulated 1180 MMEs within nine categories. Prior to 2000, intentional killing by humans caused the greatest proportion of MMEs in bats. In North America and Europe, people typically killed bats because they were perceived as nuisances. Intentional killing occurred in South America for vampire bat control, in Asia and Australia for fruit depredation control, and in Africa and Asia for human food. Biotic factors, accidents, and natural abiotic factors were also important historically. Chemical contaminants were confirmed causes of MMEs in North America, Europe, and in islands. Viral and bacterial diseases ranked low as causes of MMEs in bats. Two factors led to a major shift in causes of MMEs in bats at around 2000: the global increase of industrial wind-power facilities and the outbreak of white-nose syndrome in North America. Collisions with wind turbines and white-nose syndrome are now the leading causes of reported MMEs in bats. Collectively, over half of all reported MMEs were of anthropogenic origin. The documented occurrence of MMEs in bats due to abiotic factors such as intense storms, flooding, heat waves, and drought is likely to increase in the future with climate change. Coupled with the chronic threats of roosting and foraging habitat loss, increasing mortality through MMEs is unlikely to be compensated for, given the need for high survival in the dynamics of bat populations.

Mammal Review↗
USGS2014

Variability in seroprevalence of rabies virus neutralizing antibodies and associated factors in a Colorado population of big brown bats (Eptesicus fuscus)

In 2001–2005 we sampled permanently marked big brown bats (Eptesicus fuscus) at summer roosts in buildings at Fort Collins, Colorado, for rabies virus neutralizing antibodies (RVNA). Seroprevalence was higher in adult females (17.9%, n = 2,332) than males (9.4%, n = 128; P = 0.007) or volant juveniles (10.2%, n = 738; P<0.0001). Seroprevalence was lowest in a drought year with local insecticide use and highest in the year with normal conditions, suggesting that environmental stress may suppress RVNA production in big brown bats. Seroprevalence also increased with age of bat, and varied from 6.2 to 26.7% among adult females at five roosts sampled each year for five years. Seroprevalence of adult females at 17 other roosts sampled for 1 to 4 years ranged from 0.0 to 47.1%. Using logistic regression, the only ranking model in our candidate set of explanatory variables for serological status at first sampling included year, day of season, and a year by day of season interaction that varied with relative drought conditions. The presence or absence of antibodies in individual bats showed temporal variability. Year alone provided the best model to explain the likelihood of adult female bats showing a transition to seronegative from a previously seropositive state. Day of the season was the only competitive model to explain the likelihood of a transition from seronegative to seropositive, which increased as the season progressed. We found no rabies viral RNA in oropharyngeal secretions of 261 seropositive bats or in organs of 13 euthanized seropositive bats. Survival of seropositive and seronegative bats did not differ. The presence of RVNA in serum of bats should not be interpreted as evidence for ongoing rabies infection.

Colorado↗
USGS2014

Seasonal shifts in the diet of the big brown bat (Eptesicus fuscus), Fort Collins, Colorado

Recent analyses suggest that the big brown bat ( Eptesicus fuscus ) may be less of a beetle specialist (Coleoptera) in the western United States than previously thought, and that its diet might also vary with temperature. We tested the hypothesis that big brown bats might opportunistically prey on moths by analyzing insect fragments in guano pellets from 30 individual bats (27 females and 3 males) captured while foraging in Fort Collins, Colorado, during May, late July&ndash;early August, and late September 2002. We found that bats sampled 17&ndash;20 May (n = 12 bats) had a high (81&ndash;83%) percentage of volume of lepidopterans in guano, with the remainder (17&ndash;19% volume) dipterans and no coleopterans. From 28 May&ndash;9 August (n = 17 bats) coleopterans dominated (74&ndash;98% volume). On 20 September (n = 1 bat) lepidopterans were 99% of volume in guano. Migratory miller moths (Euxoa auxiliaris) were unusually abundant in Fort Collins in spring and autumn of 2002 and are known agricultural pests as larvae (army cutworms), suggesting that seasonal dietary flexibility in big brown bats has economic benefits.

Colorado↗
USGS2014

Bat flight and zoonotic viruses

Bats are sources of high viral diversity and high-profile zoonotic viruses worldwide. Although apparently not pathogenic in their reservoir hosts, some viruses from bats severely affect other mammals, including humans. Examples include severe acute respiratory syndrome coronaviruses, Ebola and Marburg viruses, and Nipah and Hendra viruses. Factors underlying high viral diversity in bats are the subject of speculation. We hypothesize that flight, a factor common to all bats but to no other mammals, provides an intensive selective force for coexistence with viral parasites through a daily cycle that elevates metabolism and body temperature analogous to the febrile response in other mammals. On an evolutionary scale, this host–virus interaction might have resulted in the large diversity of zoonotic viruses in bats, possibly through bat viruses adapting to be more tolerant of the fever response and less virulent to their natural hosts.

Emerging Infectious Diseases↗
USGS2013

Genetic characterization of the Pacific sheath-tailed bat (Emballonura semicaudata rotensis) using mitochondrial DNA sequence data

Emballonura semicaudata occurs in the southwestern Pacific and populations on many islands have declined or disappeared. One subspecies (E. semicaudata rotensis) occurs in the Northern Mariana Islands, where it has been extirpated from all but 1 island (Aguiguan). We assessed genetic similarity between the last population of E. s. rotensis and 2 other subspecies, and examined genetic diversity on Aguiguan. We sampled 12 E. s. rotensis, sequenced them at 3 mitochondrial loci, and compared them with published sequences from 2 other subspecies. All 12 E. s. rotensis had identical sequences in each of the 3 regions. Using cytochrome-b (Cytb) data E. s. rotensis was sister to E. s. palauensis in a clade separate from E. s. semicaudata. 12S ribosomal RNA (12S) sequences grouped all E. s. semicaudata in 1 clade with E. s. rotensis in a clade by itself. Genetic distances among the 3 subspecies at Cytb were smallest between E. s. palauensis and E. s. rotensis. Distance between E. s. semicaudata and the other 2 subspecies was not different from the distance between E. s. semicaudata and the full species E. raffrayana. A similar relationship was found using the 12S data. These distances are larger than those typically reported for mammalian subspecies using Cytb sequence and within the range of sister species.

Journal of Mammalogy↗
USGS2011

Bat ecology and public health surveillance for rabies in an urbanizing region of Colorado

We describe use of Fort Collins, Colorado, and nearby areas by bats in 2001–2005, and link patterns in bat ecology with concurrent public health surveillance for rabies. Our analyses are based on evaluation of summary statistics, and information-theoretic support for results of simple logistic regression. Based on captures in mist nets, the city bat fauna differed from that of the adjacent mountains, and was dominated by big brown bats ( Eptesicus fuscus ). Species, age, and sex composition of bats submitted for rabies testing locally and along the urbanizing Front Range Corridor were similar to those of the mist-net captures and reflected the annual cycle of reproduction and activity of big brown bats. Few submissions occurred November- March, when these bats hibernated elsewhere. In summer females roosted in buildings in colonies and dominated health samples; fledging of young corresponded to a summer peak in health submissions with no increase in rabies prevalence. Roosting ecology of big brown bats in buildings was similar to that reported for natural sites, including colony size, roost-switching behavior, fidelity to roosts in a small area, and attributes important for roost selection. Attrition in roosts occurred from structural modifications of buildings to exclude colonies by citizens, but without major effects on long-term bat reproduction or survival. Bats foraged in areas set aside for nature conservation. A pattern of lower diversity in urban bat communities with dominance by big brown bats may occur widely in the USA, and is consistent with national public health records for rabies surveillance.

Colorado↗
USGS2011

Diets of the sympatric pacific sheath-tailed bat (Emballonura semicaudata rotensis) and Mariana Swiftlet (Aerodramus bartscht) on Aguiguan, Mariana Islands

The Pacific sheath-tailed bat ( Emballonura semicaudata rotensis ) and Mariana swiftlet ( Aerodramus bartschi ) are two rare insectivorous taxa restricted to the southern Mariana Islands in western Micronesia. It is believed that populations of both have dwindled because of impacts to their food resources. However, there is little information on the food habits of A. bartschi and none exists for E. s. rotensis . In an effort to better understand the feeding habits of both, we investigated their diets using guano analysis. Guano was collected from two roosts in caves during a 2-week period in June and July at the onset of the rainy season. Important orders of insects consumed (percentage volume) by bats roosting at one cave included hymenopterans (64%), coleopterans (10%), lepidopterans (8%), isopterans (8%), and psocopterans (5%), whereas those at a second cave included lepidopterans (45%), hymenopterans (41%), coleopterans (10%), and isopterans (5%). Swiftlets, which roosted in only one of the caves, fed mostly on hymenopterans (88%) and hemipterans (6%). Significant differences existed between the two taxa in several insect orders eaten, with E. s. rotensis consuming more lepidopterans and coleopterans and A. bartschi taking more hymenopterans and hemipterans. Within Hymenoptera, bats fed more on ichneumoideans, whereas swiftlets ate more formicid alates and chalicidoideans. This new information on the feeding habits of E. s. rotensis and A. bartschi provides insight on the complexity of their diets during June and July, and serves as baseline information for future studies and management of their habitat.

Pacific Science↗
USGS2008

Regional brain morphometry and lissencephaly in the Sirenia

Neuroanatomical structure was examined in the brains of West Indian manatees (Trichechus manatus) using computer-based morphometric methods. Although manatees have a small relative brain size, volume estimates of the major brain regions indicate that the telencephalon comprises 71% of totalbrain volume and is 90% cerebral cortex. These values are comparable to those seen among a diversity of taxa having large relative brain size, including many primates. Manatee brains also exhibit well-defined cortical lamination. The measured gyration index (an index of cortical folding) was 1.06, representing a highly lissencephalic condition. These findings demonstrate that small relative brain size and lissencephaly do not constrain the elaboration of internal brain structures. The marked lissencephalic condition is unusual for brains of this absolute size range, and may be related to the thickness of the cortical gray matter and underlying white matter.

Brain, Behavior and Evolution↗
USGS2003

Western crevice and cavity-roosting bats

Among the 45 species of bats that occur in the United States (U.S.), 34 species regularly occur in western regions of the country. Many of these “western” species choose roost sites in crevices or cavities. Herein we provide an introduction to the biology of bats that roost in cavities and crevices and assess the challenges and opportunities associated with monitoring their populations. We reviewed recent studies and examined the U.S. Geological Survey Bat Population Database (BPD) for records of western bats using crevice and cavity roosts. We found records of 25 species of western bats that use crevice or cavity roosts for at least part of their annual cycle. There were relatively few (n = 92) observations or counts for these species in the BPD, representing only 6% of the observations in the database. This paucity of records likely reflects the difficulty of observing bats in such situations rather than actual use. We found no long-term data adequate for population trend analysis among this group of bats. Since the development of miniaturized radio transmitters, our knowledge about bats that roost in cavities and crevices has increased. Future challenges associated with monitoring these species will include understanding variability in the types of roosts used as well as the roost-switching behavior exhibited by many species.

Report↗
USGS2003

Western crevice and cavity-roosting bats

Among the 45 species of bats that occur in the United States (U.S.), 34 species regularly occur in western regions of the country. Many of these “western” species choose roost sites in crevices or cavities. Herein we provide an introduction to the biology of bats that roost in cavities and crevices and assess the challenges and opportunities associated with monitoring their populations. We reviewed recent studies and examined the U.S. Geological Survey Bat Population Database (BPD) for records of western bats using crevice and cavity roosts. We found records of 25 species of western bats that use crevice or cavity roosts for at least part of their annual cycle. There were relatively few (n = 92) observations or counts for these species in the BPD, representing only 6% of the observations in the database. This paucity of records likely reflects the difficulty of observing bats in such situations rather than actual use. We found no long-term data adequate for population trend analysis among this group of bats. Since the development of miniaturized radio transmitters, our knowledge about bats that roost in cavities and crevices has increased. Future challenges associated with monitoring these species will include understanding variability in the types of roosts used as well as the roost-switching behavior exhibited by many species.

Book chapter↗
USGS1995

Florida manatees

The endangered Florida manatee ( Trichechus manatus latirostris ) is a survivor. It is one of only three living species of manatees which, along with their closest living relative, the dugong ( Dugong dugon ), make up the Order Sirenia. This taxonomic distinctiveness reflects their evolutionary and genetic uniqueness. Sirenians are the only herbivorous marine mammals; manatees feed on seagrasses; freshwater plants, including nuisance species such as hydrilla and water hyacinth; and even some shoreline vegetation. Because manatees depend on marine, estuarine, and freshwater ecosystems, our efforts to protect them necessitate protection of aquatic resources.

Book chapter↗
USGS1984

Contaminant concentrations in manatees in Florida

The status of the endangered manatee ( Trichehus manatus ) in relation to organochlorine pesticides, polychlorinated biphenyls, mercury, lead, cadmium, copper, iron, and selenium was investigated in Florida from 1977 to 1981. Concentrations of organochlorines in blubber, mercury in muscle and liver, lead in liver, and lead and cadmium in kidneys did not indicate high exposure to these contaminants. Only cadmium in kidneys showed a positivde correlation with relative age. Copper concentrations in livers of these aquatic herbivores were significantly elevated in areas of high herbicidal copper usage after adjustment for significant age-related effects. Liver copper concentrations comparable to those associated with toxic effects in some domestic species were found in manatees from areas of high copper herbicide use. The use of copper herbicides for control of aquatic plants should be carefully managed in areas used intensively by manatees.

Florida↗