Geology topics

Stewart A. Rounds

Publications and source records attributed to Stewart A. Rounds.

At least 37 records · Page 2Linked to original sources

USGS2018

Prioritization framework for ranking riverine ecosystem stressors using example sites from the Tualatin River Basin, Oregon

As human populations increase, so does their influence over the environment. Altered terrain, degraded water quality, and threatened or endangered species are all-too-common consequences of a growing anthropogenic influence on the landscape. To help manage these effects, researchers have developed new ways to characterize current environmental conditions and help resource managers seek solutions to bring affected areas back to their best attainable health. Before an ecosystem can be improved, however, its current level of ecological stress must be determined. Characterizing environmental conditions at many sites across a landscape helps managers understand the range of current conditions and prioritize where they might focus restoration and protection efforts. This report details the development of a prioritization framework to score riverine ecosystem stressors in a watershed based on example sites from the Tualatin River Basin in northwestern Oregon. The framework incorporated the most influential site-specific stressors throughout the basin built on a long history of data collection. These stressors were characterized with 13 metrics that were organized into 4 groups: hydrologic, water quality, physical habitat, and biological. Each stressor metric used readily accessible data and was translated to a score between 0 and 10. The higher the score, the healthier the site. This initial application of the framework used field observations and measurements to rank site conditions at two Tualatin River sites and four Tualatin River tributary sites. Given the versatility of this framework, it easily could be expanded to include more sites or new metrics, if necessary. Because stressors varied by season, all metrics for the tributary sites were scored separately during the wet season (November through April) and dry season (May through October). Water-quality data were available over a prolonged period; therefore, water-quality metrics were assessed by season and by decade (1990–99 compared to 2000–12) to evaluate long-term stressor trends. Results for the Tualatin River Basin prioritization framework indicated that the urban tributaries demonstrated the greatest stress throughout the year, especially during the dry summer months. Spatially, the upper Tualatin River was healthier than the lower reaches of the river. Water-quality has improved in the last 10 years, mostly due to improvements in the dry period contaminant scores, but challenges remain with high water temperatures and low dissolved-oxygen conditions. The biggest challenge with this type of research derived from inconsistencies within the available data. Both spatial and temporal data gaps must be addressed to improve the prioritization. Incorporating both discrete and continuous datasets into the prioritization framework remains a challenge because the datasets have slightly different information and criteria and are not always comparable. Regardless, this report provides guidelines for developing a prioritization framework that ranks the ecological health of sites in a watershed and provides guidance on management actions for improving conditions by targeting factors that greatly affect the health of river ecosystems.

Oregon↗

USGS2018

Modeling hydrodynamics, water temperature, and water quality in Klamath Straits Drain, Oregon and California, 2012–15

Executive Summary Located southwest of Klamath Falls, Oregon, Klamath Straits Drain is a 10.1-mile-long canal that conveys water uphill and northward through the use of pumps before discharging to the Klamath River. Klamath Straits Drain traverses an area that historically encompassed Lower Klamath Lake. Currently, the Drain receives water from farmland and from parts of the Lower Klamath Lake National Wildlife Refuge. To support water-quality improvement in Klamath Straits Drain, a hydrodynamic and water-temperature model was constructed and calibrated for calendar years 2012–15 with the two-dimensional model CE-QUAL-W2 (version 4.0). Water quality was calibrated for a subset of that time, from April 1, 2012 to March 31, 2015. Flows in calendar year 2012 were within the normal range, while calendar years 2013–15 were dry years. Significant findings from this study include: In the years studied, only limited flow entered Klamath Straits Drain at the upstream Headworks (KSDH) site. Most flow entered the Drain between KSDH and the E-EE pumps near Township Road through several irrigation channels and ditches. Few data were available to describe the quality of this water for the period of study. The E-EE and F-FF pumps along Klamath Straits Drain mainly operated automatically to keep water levels relatively steady. Ten-minute flow data at streamgage 11509340, downstream of the F-FF pumps, showed high-frequency on/off switching of the F-FF pumps. Combined with daily mean flow data from the F-FF pumps, the downstream 10-minute flow data allowed estimation of 10-minute pumping rates for the F-FF pumps. Paper pump charts showed the existence of short-term variability at the E-EE pumps; however, daily pump data were used at the E-EE pump location in the model. Water temperature in Klamath Straits Drain varied from less than 5 degrees Celsius (°C) (with occasional ice cover in December–January) to greater than 20 °C in May–September. In the years studied, specific conductance was typically 250–850 microsiemens per centimeter, higher than Klamath River specific conductance (typically 100–200 microsiemens per centimeter). Increased chlorophyll a in autumn and winter, along with supersaturated oxygen concentrations, indicated algal blooms in the Drain at that time of year. The blooms were most likely diatoms, based on the timing of blooms sampled elsewhere. Total nitrogen concentration was as much as 5.5 mg/L, with most in dissolved organic and particulate forms, and lower amounts in ammonia and nitrate+nitrite. Total phosphorus concentrations were distributed between orthophophorus (at a median concentration of 0.15 mg/L) and organic and particulate forms (at a median concentration of 0.13 mg/L). Most of the organic carbon in the Klamath Straits Drain was in dissolved rather than particulate form. Newly collected water-quality data for April 1, 2012–March 31, 2015 helped provide the impetus for this modeling study. However, a lack of some data still hindered the construction and calibration of this model. The model would benefit from additional data to describe water-quality boundary conditions, water-quality calibration data upstream of the F-FF pumps, short-term E-EE pump operations, and channel bathymetry in the reach between Highway 97 and the confluence with the Klamath River. Klamath River water mixed upstream into the Klamath Straits Drain, up to the Klamath Straits Drain F-FF pumps at Highway 97, when the F-FF pumps were not operating for periods of hours to days. The F-FF pumps were off for many days during this study, especially during dry years. The boundary between Klamath Straits Drain and the Klamath River was best modeled with an external head condition, which allows exchange of water between the river and the drain in both directions, upstream and downstream. Currently there is a flow gage, water-quality monitor, and a water-quality sampling site located downstream of the F-FF pumps, in the reach where Klamath Straits Drain water can mix with Klamath River water. To sample solely Klamath Straits Drain water, water samples would need to be collected only when the F-FF pumps are actively pumping. Alternately, the sampling location could be moved upstream of the pumps. Interpretation and use of historical water-quality data at the Klamath Straits Drain at Highway 97 site should be done in conjunction with information on pump activity to help inform whether mixing with Klamath River water may have occurred. Total 2014 (a dry year) phosphorus loads from the Drain to the Klamath River were lower and closer to total maximum daily load (TMDL) allocations, as compared to 2013, a year with greater flow and pumping. Modeled travel time through the Klamath Straits Drain, from Headworks to its confluence with the Klamath River, ranged from approximately 24 hours at high flow to 16 days or more, depending on how many days the pumps were turned off. The longer travel times are sufficient for important water-quality transformations, such as algal growth and organic-matter decomposition. This newly constructed model of the Klamath Straits Drain simulates flow, water levels, water temperature, and water quality with acceptable accuracy but with certain data limitations. This model should prove useful in evaluating potential strategies for flow and water-quality management and restoration.

California, Oregon↗

USGS2018

Water temperature in tributaries, off-channel features, and main channel of the lower Willamette River, northwestern Oregon, summers 2016 and 2017

The U.S. Geological Survey collected continuous water-temperature data in select tributaries of the lowermost 80 kilometers (50 miles) of the Willamette River in northwestern Oregon, during summers 2016 and 2017. Point measurements of water temperature and water quality (dissolved oxygen, specific conductance, and pH) also were collected at multiple locations and depths within the river and in the lower reaches of three major tributaries (Clackamas and Molalla Rivers, and Johnson Creek). These datasets were collected to identify potential locations of cold-water refuges for sensitive fish species, and to characterize daily, seasonal, and spatial variability in water conditions. These datasets may be useful for local municipalities that are required to identify cold-water refuges (as defined in State of Oregon water-quality standards) and determine approaches for protecting and enhancing these features as part of their Willamette River water-temperature Total Maximum Daily Load implementation plans. This report documents the data collection methods, provides summary graphs and maps of the water-temperature data, and outlines steps for accessing the data.

Oregon↗

USGS2018

Klamath River Basin water-quality data

The Klamath River Basin stretches from the mountains and inland basins of south-central Oregon and northern California to the Pacific Ocean, spanning multiple climatic regions and encompassing a variety of ecosystems. Water quantity and water quality are important topics in the basin, because water is a critical resource for farming and municipal use, power generation, and for the support of wildlife, aquatic ecosystems, and endangered species. Upper Klamath Lake is the largest freshwater lake in Oregon (112 square miles) and is known for its seasonal algal blooms. The Klamath River has dams for hydropower and the upper basin requires irrigation water to support agriculture and grazing. Multiple species of endangered fish inhabit the rivers and lakes, and the marshes are key stops on the Pacific flyway for migrating birds. For these and other reasons, the water resources in this basin have been studied and monitored to support their management distribution.

California, Oregon↗

USGS2016

Water temperature effects from simulated dam operations and structures in the Middle Fork Willamette River, western Oregon

Significant Findings Streamflow and water temperature in the Middle Fork Willamette River (MFWR), western Oregon, have been regulated and altered since the construction of Lookout Point, Dexter, and Hills Creek Dams in 1954 and 1961, respectively. Each year, summer releases from the dams typically are cooler than pre-dam conditions, with the reverse (warmer than pre-dam conditions) occurring in autumn. This pattern has been detrimental to habitat of endangered Upper Willamette River (UWR) Chinook salmon ( Oncorhynchus tshawytscha ) and UWR winter steelhead ( O. mykiss ) throughout multiple life stages. In this study, scenarios testing different dam-operation strategies and hypothetical dam-outlet structures were simulated using CE-QUAL-W2 hydrodynamic/temperature models of the MFWR system from Hills Creek Lake (HCR) to Lookout Point (LOP) and Dexter (DEX) Lakes to explore and understand the efficacy of potential flow and temperature mitigation options. Model scenarios were run in constructed wet, normal, and dry hydrologic calendar years, and designed to minimize the effects of Hills Creek and Lookout Point Dams on river temperature by prioritizing warmer lake surface releases in May–August and cooler, deep releases in September–December. Operational scenarios consisted of a range of modified release rate rules, relaxation of power-generation constraints, variations in the timing of refill and drawdown, and maintenance of different summer maximum lake levels at HCR and LOP. Structural scenarios included various combinations of hypothetical floating outlets near the lake surface and hypothetical new outlets at depth. Scenario results were compared to scenarios using existing operational rules that give temperature management some priority ( Base ), scenarios using pre-2012 operational rules that prioritized power generation over temperature management ( NoBlend ), and estimated temperatures from a without-dams condition ( WoDams ). Results of the tested model scenarios led to the following conclusions: The existing outlets at Lookout Point Dam, because of the range of depths, allow for greater temperature control than the two existing outlets at Hills Creek Dam that are relatively deep. Temperature control at HCR through operational scenarios generally was minimal near Hills Creek Dam, but improved downstream toward the head of LOP when decreased release rates held HCR at a low lake elevation year-round. Inflows from unregulated streams between HCR and LOP helped to dilute the effects of HCR and achieve more natural stream temperatures before the MFWR entered LOP. The relative benefit of any particular scenario depended on the location in the MFWR system used to assess the potential change, with most scenarios involving changes to Hills Creek Dam being less effective with increasing downstream distance, such as downstream of DEX. To achieve as much temperature control as the most successful structural scenarios, which were able to resemble without-dam conditions for part of the year, most operational scenarios had to be free of any power-generation requirements at Lookout Point Dam. Downstream of DEX, scenarios incorporating a hypothetical floating outlet at either HCR or LOP resulted in similar temperatures, with both scenarios causing a delay in the estimated spring Chinook egg emergence by about 9–10 days compared to base-case temperature-management scenarios.

Oregon↗

USGS2016

Modeling water quality, temperature, and flow in Link River, south-central Oregon

The 2.1-km (1.3-mi) Link River connects Upper Klamath Lake to the Klamath River in south-central Oregon. A CE-QUAL-W2 flow and water-quality model of Link River was developed to provide a connection between an existing model of the upper Klamath River and any existing or future models of Upper Klamath Lake. Water-quality sampling at six locations in Link River was done during 2013–15 to support model development and to provide a better understanding of instream biogeochemical processes. The short reach and high velocities in Link River resulted in fast travel times and limited water-quality transformations, except for dissolved oxygen. Reaeration through the reach, especially at the falls in Link River, was particularly important in moderating dissolved oxygen concentrations that at times entered the reach at Link River Dam with marked supersaturation or subsaturation. This reaeration resulted in concentrations closer to saturation downstream at the mouth of Link River.

Oregon↗

USGS2016

Simulating future water temperatures in the North Santiam River, Oregon

A previously calibrated two-dimensional hydrodynamic and water-quality model (CE-QUAL-W2) of Detroit Lake in western Oregon was used in conjunction with inflows derived from Precipitation-Runoff Modeling System (PRMS) hydrologic models to examine in-lake and downstream water temperature effects under future climate conditions. Current and hypothetical operations and structures at Detroit Dam were imposed on boundary conditions derived from downscaled General Circulation Models in base (1990–1999) and future (2059–2068) periods. Compared with the base period, future air temperatures were about 2 °C warmer year-round. Higher air temperature and lower precipitation under the future period resulted in a 23% reduction in mean annual PRMS-simulated discharge and a 1 °C increase in mean annual estimated stream temperatures flowing into the lake compared to the base period. Simulations incorporating current operational rules and minimum release rates at Detroit Dam to support downstream habitat, irrigation, and water supply during key times of year resulted in lower future lake levels. That scenario results in a lake level that is above the dam’s spillway crest only about half as many days in the future compared to historical frequencies. Managing temperature downstream of Detroit Dam depends on the ability to blend warmer water from the lake’s surface with cooler water from deep in the lake, and the spillway is an important release point near the lake’s surface. Annual average in-lake and release temperatures from Detroit Lake warmed 1.1 °C and 1.5 °C from base to future periods under present-day dam operational rules and fill schedules. Simulated dam operations such as beginning refill of the lake 30 days earlier or reducing minimum release rates (to keep more water in the lake to retain the use of the spillway) mitigated future warming to 0.4 and 0.9 °C below existing operational scenarios during the critical autumn spawning period for endangered salmonids. A hypothetical floating surface withdrawal at Detroit Dam improved temperature control in summer and autumn (0.6 °C warmer in summer, 0.6 °C cooler in autumn compared to existing structures) without altering release rates or lake level management rules.

Oregon↗

USGS2015

Upstream factors affecting Tualatin River algae—Tracking the 2008 Anabaena algae bloom to Wapato Lake, Oregon

Significant Findings A large bloom that included floating mats of the blue-green algae Anabaena flos-aquae occurred in the lower 20 miles of the Tualatin River in northwestern Oregon between July 7 and July 17, 2008. The floating bloom was deemed a hazard to recreational users of the river due to the potential production of algal toxins (anatoxin- a and microcystin), and a public health advisory was posted for the lower 10.8 miles of the river by the Oregon Department of Human Services for July 12–25, 2008. The bloom caused nuisance taste and odor issues and required modified drinking-water treatment techniques where water was withdrawn for municipal uses in the upper reaches of the Tualatin River, some 46 miles upstream of the worst algae problems. Using water sample data from Clean Water Services and the Joint Water Commission, and continuous and discrete monitoring data from the U.S. Geological Survey, the source of the anomalous water-quality conditions and the likely source of the Anabaena bloom was traced upstream to discharges from the Wapato Lake agricultural area near Gaston, Oregon, in the upper part of the watershed near river mile 60. The Wapato Lake algae bloom occurred as standing water remained on the lakebed far longer than normal—into early summer. A failure of the levee on the edge of Wapato Lake in December 2007 caused by heavy rainfall and high water in the canal outside the levee inundated the lakebed to a depth of 7–9 feet, storing thousands of acre-feet more water than its normal winter volume. The water could not be pumped out until the levee was repaired or river levels receded, thus delaying drainage of the lake until summer and facilitating the bloom. In normal summers, the lower Tualatin River grows a moderate crop of algae that responds strongly to streamflow (residence time), light available for photosynthesis, and phosphorus concentrations. In 2008, however, inoculation of the river with phytoplankton and zooplankton discharged from Wapato Lake some 30 miles upstream of the lower, pooled reach of the river demonstrated the importance of upstream factors on plankton communities and water-quality conditions in the Tualatin River. The Wapato Lake algae bloom of July 2008 provided useful information and lessons for agencies managing public health, wetlands, agricultural activities, and water quality in the Tualatin River basin and similar river basins elsewhere. The results and insights derived from this study can be used to enhance future monitoring and data collection strategies designed to improve water quality and plankton models and better predict dissolved-oxygen concentrations in the lower Tualatin River.

Oregon↗

USGS2015

Organic matters: Investigating the sources, transport, and fate of organic matter in Fanno Creek, Oregon

The term organic matter refers to the remnants of all living material. This can include fallen leaves, yard waste, animal waste, downed timber, or the remains of any other plant and animal life. Organic matter is abundant both on land and in water. Investigating organic matter is necessary for understanding the fate and transport of carbon (a major constituent of organic matter). Organic matter is necessary for maintaining a healthy ecosystem. It participates in a wide range of ecological functions, such as supplying food to the microbes that are part of the foundation of the food chain. Organic matter also plays a role in many other natural functions, including the binding and transport of some trace metals and controlling how light is absorbed in the water column. Organic matter in a stream can be found in many places, such as in the leaves that have fallen from a tree (termed "leaf litter"), in algae floating in the stream or attached to rocks, as part of the soil, or even suspended or dissolved in the water. The U.S. Geological Survey (USGS), in cooperation with Clean Water Services, recently completed an investigation into the sources, transport, and fate of organic matter in the Fanno Creek watershed. The information provided by this investigation will help resource managers to implement strategies aimed at decreasing the excess supply of organic matter that contributes to low dissolved-oxygen levels in Fanno Creek and downstream in the Tualatin River during summer. This fact sheet summarizes the findings of the investigation.

Oregon↗

USGS2015

Simulations of a hypothetical temperature control structure at Detroit Dam on the North Santiam River, northwestern Oregon

Water temperature models of Detroit Lake, Big Cliff Lake, and the North Santiam River in northwestern Oregon were used to assess the potential for a hypothetical structure with variable intake elevations and an internal connection to power turbines at Detroit Dam (scenario SlidingWeir ) to release more natural, pre-dam temperatures year round. This hypothetical structure improved outflow temperature control from Detroit Dam while meeting minimum dry-season release rates and lake levels specified by the rule curve specified for Detroit Lake. A water temperature target based on long-term, without-dams temperature estimates was developed and used to guide the Detroit Lake model to blend releases from the user-defined outlets at Detroit Dam. Simulations that included warm surface water releases during the spring and summer, and cool, deep hypolimnetic water releases later during autumn typically met the temperature target. Immediately downstream of Detroit Dam, these simulations resulted in temperatures within the range of the without-dams temperature estimates for most of the year until about November. The minimum release rates of flow imposed at Detroit Dam during late summer and early autumn exceeded unregulated, without-dams flow estimates. This higher flow led to temperatures near the low end of the without-dams temperature range 46.3 river miles downstream at Greens Bridge from July to September; the high flows released from Detroit Dam were less susceptible to downstream warming than the low unregulated flows. Simulations that blended warm and cool water from different outlets at Detroit Dam resulted in less daily temperature variation compared to the without-dams scenarios as far downstream as Greens Bridge. Estimated egg-emergence days for endangered Upper Willamette River Chinook salmon ( Oncorhynchus tshawytscha ) and Upper Willamette River winter steelhead ( Oncorhynchus mykiss ) were assessed for all scenarios. Estimated spring Chinook fry emergence under SlidingWeir scenarios was 9 days later immediately downstream of Big Cliff Dam, and 4 days later at Greens Bridge compared with existing structural scenarios at Detroit Dam. Despite the inclusion of a hypothetical sliding weir at Detroit Dam, temperatures exceeded without-dams temperatures during November and December. These late-autumn exceedances likely represent the residual thermal effect of Detroit Lake operated to meet minimum dry-season release rates (supporting instream habitat and irrigation requirements) and lake levels specified by the current (2014) operating rules (supporting recreation and flood mitigation).

Oregon↗

USGS2015

Improved algorithms in the CE-QUAL-W2 water-quality model for blending dam releases to meet downstream water-temperature targets

Water-quality models allow water resource professionals to examine conditions under an almost unlimited variety of potential future scenarios. The two-dimensional (longitudinal, vertical) water-quality model CE-QUAL-W2, version 3.7, was enhanced and augmented with new features to help dam operators and managers explore and optimize potential solutions for temperature management downstream of thermally stratified reservoirs. Such temperature management often is accomplished by blending releases from multiple dam outlets that access water of different temperatures at different depths. The modified blending algorithm in version 3.7 of CE-QUAL-W2 allows the user to specify a time-series of target release temperatures, designate from 2 to 10 floating or fixed-elevation outlets for blending, impose minimum and maximum head and flow constraints for any blended outlet, and set priority designations for each outlet that allow the model to choose which outlets to use and how to balance releases among them. The modified model was tested with a variety of examples and against a previously calibrated model of Detroit Lake on the North Santiam River in northwestern Oregon, and the results compared well. These updates to the blending algorithms will allow more complicated dam-operation scenarios to be evaluated somewhat automatically with the model, with decreased need for multiple model runs or preprocessing of model inputs to fully characterize the operational constraints.

Open-File Report↗

USGS2014

Investigating organic matter in Fanno Creek, Oregon, Part 1 of 3: estimating annual foliar biomass for a deciduous-dominant urban riparian corridor

For this study, we explored the amount, type, and distribution of foliar biomass that is deposited annually as leaf litter to Fanno Creek and its floodplain in Portland, Oregon, USA. Organic matter is a significant contributor to the decreased dissolved oxygen concentrations observed in Fanno Creek each year and leaf litter is amongst the largest sources of organic matter to the stream channel and floodplain. Using a combination of field measurements and light detection and ranging (LiDAR) point cloud data, the annual foliar biomass was estimated for 13 stream reaches along the creek. Biomass estimates were divided into two sets: (1) the annual foliage available from the entire floodplain overstory canopy, and (2) the annual foliage overhanging the stream, which likely contributes leaf litter directly to the creek each year. Based on these computations, an estimated 991 (±22%) metric tons (tonnes, t) of foliar biomass is produced annually above the floodplain, with about 136 t (±24%) of that foliage falling directly into Fanno Creek. The distribution of foliar biomass varies by reach, with between 150 and 640 t/km2 produced along the floodplain and between 400 and 1100 t/km2 available over the channel. Biomass estimates vary by reach based primarily on the density of tree cover, with forest-dominant reaches containing more mature deciduous trees with broader tree canopies than either wetland or urban-dominant reaches, thus supplying more organic material to the creek. By quantifying the foliar biomass along Fanno Creek we have provided a reach-scale assessment of terrestrial organic matter loading, thereby providing land managers useful information for planning future restoration efforts.

Oregon↗

USGS2014

Investigating organic matter in Fanno Creek, Oregon, Part 2 of 3: sources, sinks, and transport of organic matter with fine sediment

Organic matter (OM) is abundant in Fanno Creek, Oregon, USA, and has been tied to a variety of water-quality concerns, including periods of low dissolved oxygen downstream in the Tualatin River, Oregon. The key sources of OM in Fanno Creek and other Tualatin River tributaries have not been fully identified, although isotopic analyses from previous studies indicated a predominantly terrestrial source. This study investigates the role of fine sediment erosion and deposition (mechanisms and spatial patterns) in relation to OM transport. Geomorphic mapping within the Fanno Creek floodplain shows that a large portion (approximately 70%) of the banks are eroding or subject to erosion, likely as a result of the imbalance caused by anthropogenic alteration. Field measurements of long- and short-term bank erosion average 4.2 cm/year and average measurements of deposition for the watershed are 4.8 cm/year. The balance between average annual erosion and deposition indicates an export of 3,250 metric tons (tonnes, t) of fine sediment to the Tualatin River—about twice the average annual export of 1,880 t of sediment at a location 2.4 km from the creek’s mouth calculated from suspended sediment load regressions from continuous turbidity data and suspended sediment samples. Carbon content from field samples of bank material, combined with fine sediment export rates, indicates that about 29–67 t of carbon, or about 49–116 t of OM, from bank sediment may be exported to the Tualatin River from Fanno Creek annually, an estimate that is a lower bound because it does not account for the mass wasting of organic-rich O and A soil horizons that enter the stream.

Oregon↗

USGS2014

Investigating organic matter in Fanno Creek, Oregon, Part 3 of 3: identifying and quantifying sources of organic matter to an urban stream

The sources, transport, and characteristics of organic matter (OM) in Fanno Creek, an urban stream in northwest Oregon, were assessed and quantified using: (1) optical instruments to calculate transported loads of dissolved, particulate, and total organic carbon, (2) fluorescence spectroscopy and stable isotope ratios (δ 13 C, δ 15 N) to elucidate sources and chemical properties of OM throughout the basin, and (3) synoptic sampling to investigate seasonal and hydrologic variations in the characteristics and quantity of OM. Results from this study indicate that of the roughly 324 (±2.9%) metric tons (tonnes, t) of organic carbon exported from the basin during March 2012 to March 2013, most of the OM in Fanno Creek was dissolved (72%) and was present year-round at concentrations exceeding 3–4 milligrams of carbon per liter, whereas particulate carbon typically was mobilized and transported only by higher-flow conditions. The isotopic and fluorescence characteristics of Fanno Creek OM indicate that the carbon originates primarily from terrestrial inputs, most likely riparian vegetative biomass that enters the stream via litterfall and overland transport and then travels through the system episodically as a result of hydrologic processes. The amount of OM exported from the Fanno Creek drainage over the course of a year in this study is consistent with previous estimates of annual riparian litterfall in or near the creek. Although the creek channel is actively eroding, most bank material has too little OM for that to be a dominant source of OM to the stream. Fluorescence data revealed that the OM contains primarily humic and fulvic-like components that become less aromatic as the OM moves downstream. The most significant seasonal variation was associated with OM transported in the first storms of the autumn season (fall flush). That material was characteristically different, with a larger fraction of microbially derived OM that probably resulted from an accumulation of easy-to-mobilize and decomposing material in the streambed during previous months of summertime low-flow conditions. The first fall flush produced the highest concentrations of OM of the entire year, and the resulting load of mobilized and decomposing OM resulted in a significant oxygen demand immediately downstream in the Tualatin River.

Oregon↗

USGS2014

Water-quality modeling of Klamath Straits Drain recirculation, a Klamath River wetland, and 2011 conditions for the Link River to Keno Dam reach of the Klamath River, Oregon

The upper Klamath River and adjacent Lost River are interconnected basins in south-central Oregon and northern California. Both basins have impaired water quality with Total Maximum Daily Loads (TMDLs) in progress or approved. In cooperation with the Bureau of Reclamation, the U.S. Geological Survey (USGS) and Watercourse Engineering, Inc., have conducted modeling and research to inform management of these basins for multiple purposes, including agriculture, endangered species protection, wildlife refuges, and adjacent and downstream water users. A water-quality and hydrodynamic model (CE-QUAL-W2) of the Link River to Keno Dam reach of the Klamath River for 2006–09 is one of the tools used in this work. The model can simulate stage, flow, water velocity, ice cover, water temperature, specific conductance, suspended sediment, nutrients, organic matter in bed sediment and the water column, three algal groups, three macrophyte groups, dissolved oxygen, and pH. This report documents two model scenarios and a test of the existing model applied to year 2011, which had exceptional water quality. The first scenario examined the water-quality effects of recirculating Klamath Straits Drain flows into the Ady Canal, to conserve water and to decrease flows from the Klamath Straits Drain to the Klamath River. The second scenario explicitly incorporated a 2.73×10 6 m 2 (675 acre) off-channel connected wetland into the CE-QUAL-W2 framework, with the wetland operating from May 1 through October 31. The wetland represented a managed treatment feature to decrease organic matter loads and process nutrients. Finally, the summer of 2011 showed substantially higher dissolved-oxygen concentrations in the Link-Keno reach than in other recent years, so the Link-Keno model (originally developed for 2006–09) was run with 2011 data as a test of model parameters and rates and to develop insights regarding the reasons for the improved water-quality conditions.

Oregon↗

USGS2013

Review of revised Klamath River Total Maximum Daily Load models from Link River Dam to Keno Dam, Oregon

Flow and water-quality models are being used to support the development of Total Maximum Daily Load (TMDL) plans for the Klamath River downstream of Upper Klamath Lake (UKL) in south-central Oregon. For riverine reaches, the RMA-2 and RMA-11 models were used, whereas the CE-QUAL-W2 model was used to simulate pooled reaches. The U.S. Geological Survey (USGS) was asked to review the most upstream of these models, from Link River Dam at the outlet of UKL downstream through the first pooled reach of the Klamath River from Lake Ewauna to Keno Dam. Previous versions of these models were reviewed in 2009 by USGS. Since that time, important revisions were made to correct several problems and address other issues. This review documents an assessment of the revised models, with emphasis on the model revisions and any remaining issues. The primary focus of this review is the 19.7-mile Lake Ewauna to Keno Dam reach of the Klamath River that was simulated with the CE-QUAL-W2 model. Water spends far more time in the Lake Ewauna to Keno Dam reach than in the 1-mile Link River reach that connects UKL to the Klamath River, and most of the critical reactions affecting water quality upstream of Keno Dam occur in that pooled reach. This model review includes assessments of years 2000 and 2002 current conditions scenarios, which were used to calibrate the model, as well as a natural conditions scenario that was used as the reference condition for the TMDL and was based on the 2000 flow conditions. The natural conditions scenario included the removal of Keno Dam, restoration of the Keno reef (a shallow spot that was removed when the dam was built), removal of all point-source inputs, and derivation of upstream boundary water-quality inputs from a previously developed UKL TMDL model. This review examined the details of the models, including model algorithms, parameter values, and boundary conditions; the review did not assess the draft Klamath River TMDL or the TMDL allocations. Attention to the details of a model is one of the best ways to identify potential problems, correct them if possible, and begin to assess the magnitude of potential model errors and uncertainty. Model users need to determine the level of acceptable uncertainty associated with their objectives, identify all sources of potential uncertainty (model uncertainty, data uncertainty, etc.), and assess their approach and results accordingly. In the draft Klamath River TMDL, the Oregon Department of Environmental Quality identified the upstream boundary conditions as the largest source of uncertainty for both the current and natural conditions scenarios, not the model algorithms or choice of model parameters. We agree that the upstream boundary conditions are one of the largest, if not the largest, source of model uncertainty; therefore, the derivation of upstream boundary conditions may be more important to the TMDL than some other model-related issues identified in this review. The revised models contain a number of changes, some of which were done to solve small problems and are largely inconsequential to model results, but others of which are important and affect model predictions of instream concentrations. A consistent version of the model is now applied to all scenarios, and an error in the source code was corrected that had inadvertently discarded 20 percent of the incoming solar radiation in the original model. The baseline light-extinction coefficient for water was decreased and set to a consistent and defensible value across all models of reservoir reaches. Inconsistencies among the values of certain parameters in the original models, such as the ammonia nitrification rate and the decomposition rates of organic matter, have been eliminated, although the reasoning behind the final selections was not documented. The dependence of the rate of sediment oxygen demand (SOD) on temperature was modified such that the SOD rate was substantially decreased at temperatures less than 20°C, causing the model to predict higher dissolved oxygen (DO) concentrations in spring, autumn, and winter. Although that change to the temperature dependence function was done to make the function more similar to the model’s default, this change was not accompanied by any documentation of recalibration or sensitivity exercises. The maximum SOD rate for the 2002 current conditions scenario was decreased from 3.0 grams per square meter per day (g/m 2 /d) in the original model to 2.0 g/m 2 /d in the revised model, a considerable adjustment that appears to have been needed to offset effects of a change to another variable (O2LIM) that would have resulted in a substantial increase in the effective SOD rate for 2002. A 50-percent decrease in the SOD rate over a 2-year period, however, is not likely to be mirrored by field measurements, so this change may be compensating for some process that is not represented correctly in the DO budget for the current conditions scenarios. Several important changes were made to the natural conditions scenario. First, the elevation of the Keno reef was corrected; the elevation specified in the original model was 1 foot too high, which affected the volume of the pooled reach and the travel time through it. The most important changes to this scenario were to the upstream boundary inputs of organic matter and algae, which affect incoming fluxes of nitrogen and phosphorus. Algal biomass inputs were increased by approximately 60 percent during summer because of a change in the way those inputs were derived from results of the UKL TMDL model. Non-algal organic matter inputs were decreased, particularly in summer to correct a problem attributed to double-counting of phosphorus in the original inputs. The distribution of non-algal organic matter was changed from 20 percent dissolved in the original model to 90 percent dissolved in the revised model in response to review comments and published data. The overall sum of algal biomass and non-living organic matter was decreased, which resulted in lower inputs of total phosphorus and nitrogen. Total phosphorus inputs were less than 0.03 mg/L, and although the inputs were derived from selected results of the UKL TMDL model, these concentrations seem too low to be representative of a historically eutrophic system surrounded by extensive wetlands, peat soils, and a groundwater system high in phosphorus. The draft TMDL states that the upstream boundary conditions are the greatest source of uncertainty, greater than any uncertainty associated with the models. Efforts to improve existing models of algal growth and nutrient cycling in UKL, therefore, would provide a substantial benefit to downstream modeling efforts on the Klamath River. Although many improvements were made in revising the Klamath River TMDL models, some issues and uncertainties remain. Several errors in the model source code remain, but do not affect model results for this application as long as certain options and rates are not changed; future users of these models should be aware of these issues. Although the distribution of dissolved and particulate organic matter was modified for the natural conditions scenario, that distribution was not changed for the current conditions scenarios. Recent data on that distribution and the likely rates of organic matter decomposition could be used to improve these models in the future. Nitrate predictions at Keno (Highway 66) still are too high for the current conditions scenarios; future efforts should re-evaluate the model’s denitrification rates and the release rate of ammonia from anoxic sediments. Possibly the most important of the remaining issues are tied to the two-state (healthy/unhealthy) hypothesis for the algae population that was coded into the model. Some of the rates and conversion functions could be refined to make them more acceptable; currently, the published literature does not support the concept of moderately low dissolved-oxygen concentrations as a stressor of algae in the ranges used by the model. More research is needed before these algorithms can be truly tested. The algorithms currently appear to help the model fit the patterns in the available data, and that is useful and perhaps sufficient for some purposes, but those algorithms are not truly predictive or reliable for certain purposes until they can be tested through well-designed experiments and research. In summary, the TMDL models used to simulate Link and Klamath Rivers from Link River Dam to Keno Dam were revised to fix several problems and address various issues. The resulting models are an improvement over those that were reviewed by USGS in 2009, and represent a useful advance in the simulation of a complex system that is difficult to model. However, several issues remain that cause increased uncertainty in the model results. Depending on the objectives of the modeling, now or in the future, these remaining issues could be more or less important. For the Klamath River TMDL, the upstream boundary conditions may be a larger source of uncertainty than the concerns with model algorithms and model parameters identified in this review. Efforts to re-evaluate the available models of algal growth and nutrient cycling in UKL would be highly beneficial to downstream modeling efforts in the Klamath River.

Oregon;California↗

USGS2013

Development of CE-QUAL-W2 models for the Middle Fork Willamette and South Santiam Rivers, Oregon

Hydrodynamic (CE-QUAL-W2) models of Hills Creek Lake (HCL), Lookout Point Lake (LOP), and Dexter Lake (DEX) on the Middle Fork Willamette River (MFWR), and models of Green Peter Lake and Foster Lake on the South Santiam River systems in western Oregon were updated and recalibrated for a wide range of flow and meteorological conditions. These CE-QUAL-W2 models originally were developed by West Consultants, Inc., for the U.S. Army Corps of Engineers. This study by the U.S. Geological Survey included a reassessment of the models’ calibration in more recent years—2002, 2006, 2008, and 2011—categorized respectively as low, normal, high, and extremely high flow calendar years. These years incorporated current dam-operation practices and more available data than the time period used in the original calibration. Modeled water temperatures downstream of both HCL and LOP-DEX on the MFWR were within an average of 0.68 degree Celsius (°C) of measured values; modeled temperatures downstream of Foster Dam on the South Santiam River were within an average of 0.65°C of measured values. A new CE-QUAL-W2 model was developed and calibrated for the riverine MFWR reach between Hills Creek Dam and the head of LOP, allowing an evaluation of the flow and temperature conditions in the entire MFWR system from HCL to Dexter Dam. The complex bathymetry and long residence time of HCL, combined with the relatively deep location of the power and regulating outlet structures at Hills Creek Dam, led to a HCL model that was highly sensitive to several outlet and geometric parameters related to dam structures (STR TOP, STR BOT, STR WIDTH). Release temperatures from HCL were important and often persisted downstream as they were incorporated in the MFWR model and the LOP-DEX model (downstream of MFWR). The models tended to underpredict the measured temperature of water releases from Dexter Dam during the late-September-through-December drawdown period in 2002, and again (to a lesser extent) in 2011, but simulations were much more accurate in 2006 and 2008. This episodic model bias may have been a result of hot, dry conditions; lower lake elevations; and earlier drawdown at both HCL and LOP in 2002. These dry conditions in 2002 may have contradicted assumptions inherent in the estimation of certain model inputs, such as unmeasured inflows and water temperatures, which may respond differently during dry years than during normal and wet years. This report documents the development and calibration of new and revised flow and water-temperature models for riverine and reservoir reaches in the Middle Fork Willamette River and South Santiam River systems. Methods and model parameter values were established for the accurate simulation of flows and temperatures in these systems under current conditions. By extension, these models should be able to accurately simulate flows and temperatures under potential future conditions in which dam operations and dam outlet structures may be changed as part of a strategy to improve habitat, fish passage, and temperature conditions for endangered fish.

Oregon↗

USGS2013

Technical evaluation of a total maximum daily load model for Upper Klamath and Agency Lakes, Oregon

We reviewed a mass balance model developed in 2001 that guided establishment of the phosphorus total maximum daily load (TMDL) for Upper Klamath and Agency Lakes, Oregon. The purpose of the review was to evaluate the strengths and weaknesses of the model and to determine whether improvements could be made using information derived from studies since the model was first developed. The new data have contributed to the understanding of processes in the lakes, particularly internal loading of phosphorus from sediment, and include measurements of diffusive fluxes of phosphorus from the bottom sediments, groundwater advection, desorption from iron oxides at high pH in a laboratory setting, and estimates of fluxes of phosphorus bound to iron and aluminum oxides. None of these processes in isolation, however, is large enough to account for the episodically high values of whole-lake internal loading calculated from a mass balance, which can range from 10 to 20 milligrams per square meter per day for short periods. The possible role of benthic invertebrates in lake sediments in the internal loading of phosphorus in the lake has become apparent since the development of the TMDL model. Benthic invertebrates can increase diffusive fluxes several-fold through bioturbation and biodiffusion, and, if the invertebrates are bottom feeders, they can recycle phosphorus to the water column through metabolic excretion. These organisms have high densities (1,822–62,178 individuals per square meter) in Upper Klamath Lake. Conversion of the mean density of tubificid worms (Oligochaeta) and chironomid midges (Diptera), two of the dominant taxa, to an areal flux rate based on laboratory measurements of metabolic excretion of two abundant species suggested that excretion by benthic invertebrates is at least as important as any of the other identified processes for internal loading to the water column. Data from sediment cores collected around Upper Klamath Lake since the development of the TMDL model also contributed to this review. Cores were sequentially extracted to determine the distribution of phosphorus associated with several matrices in the sediment (freely exchangeable, metal-oxides, acid-soluble minerals, and residual). The concentrations of phosphorus in these fractions varied around the lake in patterns that reflect transport processes in the lake and the ultimate deposition of organic and inorganic forms of phosphorus from the water column. Both organic and inorganic phosphorus had higher concentrations in the northern part of the lake, in and just west of Goose Bay. At the time that these cores were collected, prior to restoration of the Williamson River Delta, this area was close to the shoreline of the lake and east of the Williamson River mouth. This contrasts with erosional inputs, which, in addition to being high to the east of the pre-restoration Williamson River mouth, were higher in the middle of the lake than at the northern end. Organic forms of phosphorus had particularly high concentrations in the northern bays. When these cores were used to calculate a new estimate of the whole-lake-averaged concentration of total phosphorus in the top 10 centimeters of the lake sediments, the estimate was about one-third of the best estimate available when the TMDL model was developed.

Oregon↗