Steven Litvin | USGS Science

USGS2025

Widespread thiamine deficiency in California salmon linked to an anchovy-dominated marine prey base

Thiamine (vitamin B 1 ) deficiency in marine systems is a globally significant threat to marine life. In 2020, newly hatched Chinook salmon ( Oncorhynchus tshawytscha ) fry in California’s Central Valley (CCV) hatcheries swam in corkscrew patterns and died at unusually high rates due to a lack of this essential vitamin. We subsequently investigated the impacts and causes of thiamine deficiency in California’s anadromous salmonids. Our laboratory studies defined the relationship between thiamine concentrations in Chinook salmon eggs and early life-stage survival in offspring; we used these data to develop a model that estimated 26 to 48% thiamine-dependent fry mortality across consecutive years (2020–2021) for winter-run Chinook salmon. We established an egg surveillance effort that found widespread thiamine deficiency in CCV Chinook salmon in 2020 and 2021, and emerging thiamine deficiency in Klamath River and Trinity River coho salmon ( Oncorhynchus kisutch ) in 2021. We determined that thiamine injections into adults raised egg thiamine concentrations above levels found to impact early life-stage survival and swimming behavior. Ocean surveys, prey nutrition, salmon gut contents, and stable isotope data link thiamine deficiency to an ocean diet dominated by a booming population of northern anchovy ( Engraulis mordax ). This forage fish had low thiamine, high lipid, and high thiaminase activity levels consistent with both a thiaminase and oxidative stress hypothesis for causing thiamine deficiency in California salmon. Our research suggests California’s already stressed anadromous salmonids will continue to be impacted by thiamine deficiency as long as their ocean forage base and diet are dominated by northern anchovy.

Proceedings of the National Academy of Sciences↗

USGS2019

Sediment and organic carbon transport and deposition driven by internal tides along Monterey Canyon, offshore California

Submarine canyons provide globally important conduits for sediment and organic carbon transport into the deep-sea. Using a novel dataset from Monterey Canyon, offshore central California, that includes an extensive array of water column sampling devices, we address how fine-grained sediment and organic carbon are transported, mixed, fractionated, and buried along a submarine canyon. Anderson-type sediment traps were deployed 10 to 300 meters above the seafloor on moorings anchored between 278–1849 m water depths along the axial channel of Monterey Canyon during three consecutive 6-month deployments (2015–2017). Tidal currents within the canyon suspended and transported fine-grained sediment and organic carbon that were captured in sediment traps, which show apparent patterns and composition of sediment and organic carbon transport along the canyon. High sediment accumulation rates in traps increased up-canyon and near the seafloor with fine-scale (<1 cm) layering that was increasingly distinctive in CT scans. There was no along-canyon trend in the organic carbon composition (percent modern carbon and isotopic signatures) among trap locations, suggesting mixing. Organic carbon content (weight percent total organic carbon) and excess 210Pb activities (dpm/g) increased down-canyon, reflecting reduced flux of sediment and organic carbon into traps. Differing organic carbon signatures in traps compared with previous measurements of seabed deposits along Monterey Canyon suggest that canyon deposits may not reflect organic carbon available to organisms and transported through the canyon with internal tides. Organic carbon burial efficiency estimates from comparing core and trap samples are low (~26% or much less), suggesting that the modern upper Monterey Canyon may not be an effective sink for carbon in biogeochemical and CO2 cycling. Organic carbon isotopic signatures appear more marine in traps that sample from the water column than in cores that sample seafloor deposits, likely owing to the influence of sediment density flow events on deposits and preferential consumption of relatively fresh marine organic carbon on the seafloor that was largely prevented in preserved traps. Along-canyon sediment and organic carbon transport by internal tides likely occurs in many modern global submarine canyons, but canyon deposits and remaining organic carbon appear to preferentially reflect episodic sediment density flow events unrelated to internal tides. This study provides a quantified example and conceptual schematic for internal-tide-related sediment and organic carbon transport, mixing, and burial trends along a submarine canyon that are likely to have common global aspects.

California↗