Geology topics

Steven A. Farha

Publications and source records attributed to Steven A. Farha.

At least 19 recordsLinked to original sources

USGS2026

Evaluating the use of uncrewed surface vessels to enhance Lake Erie acoustic prey-fish surveys

Incorporation of autonomous uncrewed surface vessels (USVs) into large-scale acoustic surveys may enhance spatiotemporal extent and quality of fish density estimates. Lake Erie is currently surveyed by three motorized research vessels (RVs), which annually collect acoustic data and estimate prey-fish abundances. To evaluate the feasibility of incorporating a USV into the existing survey to increase spatial coverage, we compared paired acoustic measurements of target strength (TS), area backscattering coefficient (ABC), and areal fish density from four motorized RVs (three currently and one historically used) and one USV (Saildrone Explorer). Acoustic data were collected along 2-km transects during five sampling events distributed throughout Lake Erie. Despite observing event-specific differences that were likely impacted by sampling conditions, survey-level estimates of areal density between RVs and the USV were comparable (i.e., RV 6% lower than USV). RVs and the USV appear to react differently (speed and stability) to variable environmental conditions (wind and waves), which impacted data quality and must be mitigated in future applications. However, similar to previous comparisons in marine and freshwater environments, incorporating a USV into an acoustic survey could enhance annual fish density estimates by increasing effort, spatial coverage, logistical flexibility, and biological data collection opportunities from RVs.

Michigan, New York, Ohio, Pennsylvania↗

USGS2026

Status and trends of pelagic and benthic prey fish populations in Lake Michigan, 2025

Lake Michigan↗

USGS2025

Burbot population dynamics in northern Lake Michigan, 2001–2023, and predation on newly stocked lake trout by burbot

Although the worldwide status of burbot ( Lota lota ) across its Holarctic distribution has recently been assessed, adverse effects of dreissenid mussels on burbot abundance in waters invaded by mussels have not been investigated. We analyzed data from an annual spring gillnet survey to characterize burbot population dynamics in northern Lake Michigan during 2001–2023. Adult burbot abundance in northern Lake Michigan trended neither significantly upward nor downward during 2001–2023. Thus, expansion of the quagga mussel ( Dreissena rostriformis bugensis ) population into deeper waters of Lake Michigan during 2003–2008 had no detectable negative effects on burbot abundance. Burbot continued to feed on lake trout ( Salvelinus namaycush ) stocked in the Northern Refuge of Lake Michigan through 2023, which supported a hypothesis that the burbot population potentially impeded lake trout restoration in the refuge.

Michigan↗

USGS2025

Status and trends of pelagic and benthic prey fish populations in Lake Michigan, 2024

Fall bottom trawl (fall BT) and lakewide acoustic (AC) surveys are conducted annually to generate indices of pelagic and benthic prey fish densities in Lake Michigan. The fall BT survey has been conducted each fall since 1973 using 12-m trawls at depths ranging from 9 to 110 m at fixed locations distributed across seven transects; this survey estimates densities of seven prey fish species [i.e., Alewife ( Alosa pseudoharengus ), Bloater ( Coregonus hoyi ), Rainbow Smelt ( Osmerus mordax ), Deepwater Sculpin ( Myoxocephalus thompsonii ), Slimy Sculpin ( Cottus cognatus ), Round Goby ( Neogobius melanostomus ), Ninespine Stickleback ( Pungitius pungitius )] as well as age-0 Yellow Perch ( Perca flavescens ) and large (> 350 mm) Burbot ( Lota lota ). In recent years, wild juvenile (<400 mm) Lake Trout ( Salvelinus namaycush ) have also become more common in the fall bottom trawl. The AC survey has been conducted each late summer/early fall since 2004 (except 2020). The 2024 AC survey consisted of 24 transects [468 km total (291 miles)] covering bottom depths ranging from 16 to 173 m and 38 midwater trawl tows at 4 to 72 m; this survey estimates densities of three prey fish species (i.e., Alewife, Bloater, and Rainbow Smelt). The data generated from these surveys are used to estimate various population parameters that are, in turn, used by state and tribal agencies in managing Lake Michigan fish stocks. In spring of 2024, an additional spring bottom trawl survey (spring BT) was implemented across six of the transects sampled in the fall and sites ranged in depth from 9 to 237 m. The goal of the spring BT, conducted annually since 2021 with differing levels of effort, was to explore seasonal differences in biomass density and distributions of key prey species, most notably Alewife. Total prey fish biomass density from the spring BT was 5.7 kg/ha. For the AC survey, total biomass density of prey fish equaled 10.8 kg/ha, more than double the long-term average (20042023) of 5.1 kg/ha but 4.0 kg/ha lower than the 2023 estimate. For the fall BT, total biomass density of prey fish equaled 2.1 kg/ha, the lowest value since 2020 and 69% lower than the average from 2004-2023 (6.8 kg/ha). The 2024 fall BT biomass density was only 6.3% of the average over the entirety of the time series (1973-2023; 33.1 kg/ha). Over the period both surveys have been conducted (2004-2024), total biomass density has trended downward in the fall BT (despite a high 2022 estimate) and remained relatively stable in the AC survey. Deepwater Sculpin and Bloater were the most common species (by biomass) among prey fishes in the spring BT while the AC survey and fall BT reported co-dominance of Bloater and Alewife. Mean biomass of yearling and older (YAO) Alewife was 1.30 kg/ha in the spring BT, 4.7 kg/ha in the AC survey, and 0.68 kg/ha in the fall BT. Since 2014, annual survey results suggest that the catchability of YAO Alewives for the fall BT is substantially lower than the AC survey. Like previous spring surveys, Alewives were aggregated in deeper habitats, with 93% of biomass collected between 110 and 201 m. Results of the 2024 spring BT align with past spring surveys and do not suggest that spring bottom trawling provides a better index of age-2 and older Alewives than fall bottom trawling, even with adjustments for differences in habitat use. However, the spring BT does appear to index age-1 Alewives more effectively than the fall BT. The 2024 AC survey YAO Alewife biomass density estimate was 77% higher than the average from 2004-2023. The Alewife population of Lake Michigan appears to be composed mostly of young fish and the proportion of age-4 and older Alewives was <1.8% in each of the three surveys. Age-0 Alewife numeric density from the AC survey was 510 fish/ha in 2024, slightly higher than the long-term mean (486 fish/ha). Biomass density of large (≥120 mm) Bloater was 5.2 kg/ha in the AC survey and 0.76 kg/ha in the fall BT, while total Bloater biomass in the spring BT was 1.8 kg/ha - all three estimates were much lower than what was estimated by the fall BT between 1981 and 1998. The density of small (<120 mm) Bloater was 456 fish/ha in the AC survey, the second highest value in the time series and potentially reflective of an above average 2024 year-class. Meanwhile, small Bloater density estimated in the fall BT was only 16 fish/ha. Biomass density of large Rainbow Smelt (≥90 mm) was 0.21 kg/ha in the AC survey and 0.03 kg/ha in the fall BT survey, continuing the trend of low large Rainbow Smelt biomass observed since 2001. Numeric density of small (<90 mm) Rainbow Smelt was 31 fish/ha in the AC survey and 143 fish/ha in the fall BT. All four prey fish species indexed only by the fall BT had below-average biomass densities regardless of trawling season. Deepwater Sculpin biomass density was 0.26 kg/ha, which makes 14 of the past 15 years with biomass <1 kg/ha. Spring BT Deepwater Sculpin biomass density (2.0 kg/ha) was higher than any fall BT estimate since 2006, likely reflective of including bottom trawls at greater depths in the spring than the fall. Slimy Sculpin was estimated to be < 0.04 kg/ha in the spring and fall BT, an order of magnitude lower than the long-term average from the fall BT. Round Goby biomass density estimates were low and similar across seasons (0.43 kg/ha in the spring and 0.10 kg/ha in the fall). Ninespine Stickleback density was 3.9 fish/ha in the fall BT and no fish were collected in the spring BT.

Lake Michigan↗

USGS2024

Documentation of a probable spawning run of cisco Coregonus artedi in the Spanish River, Ontario, Canada

Coregonines were historically diverse and abundant in the Laurentian Great Lakes but declined throughout the 19th and 20th centuries due to multiple factors, including overfishing, habitat degradation, and interactions with invasive species. Great Lakes fishery managers are now working to restore coregonines across the basin. An important aspect of restoration efforts is the identification of key habitats, such as spawning habitats. Our understanding of the extent and diversity of coregonine spawning habitats in the Great Lakes is limited. Historical accounts suggest some cisco Coregonus artedi migrated to tributaries to spawn, but contemporary runs have not been reported. Moreover, cisco display considerable phenotypic variation, with different “forms” often occupying specific habitats or regions. We provide evidence for a previously undocumented spawning run of cisco in the Spanish River, a tributary to the North Channel of Lake Huron. We captured 31 mature and ripe fish (25 males, 6 females) approximately 52 km upstream of the river mouth on 15–16 November 2022. The fish ranged in age from 3-9 yr and total length from 287-394 mm. Of these 31 individuals, 27 were morphologically similar to C. artedi manitoulinus , a subspecies of cisco found in the North Channel; however, four individuals more closely resembled cisco captured in other areas of Lake Huron. These findings represent the best evidence of tributary spawning by cisco since the 1880s, and they have important implications for coregonine conservation and restoration efforts. Ongoing work aims to augment our understanding of the ecological and evolutionary importance of this population.

Ontario↗

USGS2024

Paired comparisons with quiet surface drones show evidence of fish behavioral response to motorized vessels during acoustic surveys in Lake Superior

Acoustic surveys are important for fish stock assessments, but fish responses to survey vessels can bias acoustic estimates. We leveraged quiet uncrewed surface vessels (USVs) to characterize potential bias in acoustic surveys. Five conventional motorized ships overtook USVs from astern over 2 km transects at night in Lake Superior in 2022. We examined the difference in acoustic backscatter, average target depth, and average target strength (TS) between USV and motorized vessels. Although sound level measurements from the motorized vessels sometimes exceeded recommendations for scientific vessels, we did not detect differences in acoustic measures among survey vessels. However, the USVs recorded 2 dB higher acoustic backscatter and TS than motorized vessels, leading to ~15% higher fish densities with drones when using in situ TS and echo integration. Differences in fish density would increase to 30-60% if a standard TS value was applied. Target depth did not differ between USVs and motorized ships. These results are consistent with a change in orientation but not depth of insonified fish and limited horizontal avoidance of motorized survey vessels.

Lake Superior↗

USGS2024

Status and trends of pelagic and benthic prey fish populations in Lake Michigan, 2023

Fall bottom trawl (fall BT) and lakewide acoustic (AC) surveys are conducted annually to generate indices of pelagic and benthic prey fish densities in Lake Michigan. The fall BT survey has been conducted each fall since 1973 using 12-m trawls at depths ranging from 9 to 110 m at fixed locations distributed across seven transects; this survey estimates densities of seven prey fish species [i.e., Alewife ( Alosa pseudoharengus ), Bloater ( Coregonus hoyi ), Rainbow Smelt ( Osmerus mordax ), Deepwater Sculpin ( Myoxocephalus thompsonii ), Slimy Sculpin ( Cottus cognatus ), Round Goby ( Neogobius melanostomus ), Ninespine Stickleback ( Pungitius pungitius )] as well as age-0 Yellow Perch ( Perca flavescens ) and large (> 350 mm) Burbot ( Lota lota ). The AC survey has been conducted each late summer/early fall since 2004, and the 2023 survey consisted of 20 transects [450 km total (336 miles)] covering bottom depths ranging from 12 to 248 m and 29 midwater trawl tows above bottom depths ranging 16 to 246 m; this survey estimates densities of three prey fish species (i.e., Alewife, Bloater, and Rainbow Smelt). The data generated from these surveys are used to estimate various population parameters that are, in turn, used by state and tribal agencies in managing Lake Michigan fish stocks. A spring bottom trawl survey (spring BT) was implemented across 3 of the transects sampled in the fall and sites ranged in depth from 18 to 164 m. The goal of the spring BT is to explore seasonal differences in biomass density and distributions of key prey species, most notably Alewife. Additionally, we conducted acoustic sampling while bottom trawling to evaluate the vertical distribution of fish relative to the height of the trawl. The abbreviated spring BT survey results indicated that Alewives were primarily offshore with peak biomass density at the 91 m bottom depth. There was no evidence of higher acoustic density above the trawl at depths of 18, 73, 128, and 146 m. At 91 and 164 m, acoustic density above the trawl was >2x that in the trawl path, but sample size at these two depths was low. For the AC survey, total biomass density of prey fish equaled 14.8 kg/ha, 223% higher than the longterm average (2004-2022) of 4.6 kg/ha and 8.8 kg/ha higher than the 2022 estimate. For the fall BT, total biomass density of prey fish equaled 3.6 kg/ha, about 50% lower than the average value from 2004-2022 (6.9 kg/ha). The 2023 fall BT biomass was an order of magnitude lower than the average over the entirety of the time series (1973-2022; 33.7 kg/ha). Bloater was the dominant species (by biomass) among prey fishes in the fall BT, while the AC survey reported dominance of Alewife. Mean biomass of yearling and older (YAO) Alewife was 10.3 kg/ha in the AC survey, and 0.7 kg/ha in the fall BT. Since 2014, catchability of YAO Alewives for the fall BT has been substantially lower than the AC survey. While limited in scope, the results of the 2023 spring BT do not suggest that catchability is substantially higher in the spring than the fall, which aligns with the 2022 survey results. Comparing the AC estimate to previous years, YAO Alewife biomass was 359% higher than the average from 2004-2022. Numeric density of age-0 Alewife from the AC survey was 1,205 fish/ha in 2023, which is the third highest in the time series and well above the long-term mean of 428 fish/ha. Biomass density of large (≥120 mm) Bloater in 2023 was 3.5 kg/ha in the AC survey and 2.1 kg/ha in the fall BT - each at least an order of magnitude lower than what was estimated by the fall BT between 1985 and 1997. Following a record high year in 2021 (1,034 fish/ha), the numeric density of small (<120 mm) Bloater was 142 fish/ha in the AC survey, similar to the long-term mean of 120 fish/ha. Meanwhile, small Bloater density estimated in the fall BT was 2 fish/ha. Biomass density of large Rainbow Smelt (≥90 mm) was <0.05 kg/ha in the AC and fall BT surveys, continuing the trend of low Rainbow Smelt biomass that has been observed since 2001. Numeric density of small (<90 mm) Rainbow Smelt was 119 fish/ha in the AC survey and 7 fish/ha in the fall BT, indicating a weak year-class. All four prey fish species sampled only by the fall BT indicated below average biomass densities. Deepwater Sculpin biomass density was estimated at 0.4 kg/ha, which makes 13 of the past 14 years when biomass was <1 kg/ha. Slimy Sculpin was estimated at 0.02 kg/ha, only 5% of the long-term average. Round Goby was estimated at 0.3 kg/ha, below the average biomass of 0.85 kg/ha since 2008 but similar to intermittent low values observed throughout the dataset. Ninespine Stickleback density was 1 fish/ha. Only 35 small (<100 mm) Yellow Perch were caught, indicating a weak Yellow Perch year-class in 2023.

Lake Michigan↗

USGS2024

Status and trends of the Lake Huron prey fish community, 1976-2023

The U. S. Geological Survey-Great Lakes Science Center has monitored annual changes in the offshore (depth >9m) prey fish community of Lake Huron since 1973. Monitoring of prey fish populations in Lake Huron is based on a bottom trawl survey that targets demersal (benthic) species and an acoustic-midwater trawl survey that targets pelagic species and life stages. In 2023, Bloater ( Coregonus hoyi ) accounted for 77% of the main basin biomass in bottom trawls and 86% of the main basin biomass in the acoustics survey. Despite this sustained importance of native species in the main basin, species diversity is below desired levels. Bloater in the main basin has exhibited population growth and strong recruitment in recent years, and Cisco ( Coregonus artedi ) has exhibited increased biomass in the North Channel since 2015. In contrast non-native Alewife ( Alosa pseudoharengus ), whose population collapsed in 2004 and has not recovered, were less than 1% of fish biomass in 2023. Rainbow Smelt ( Osmerus mordax ) accounted for 7% of the main basin biomass in bottom trawls and 22% of the main basin biomass in the acoustics survey. Despite remaining the second-most abundant prey species in the main basin, Rainbow Smelt has not shown appreciable increases in biomass despite recent strong year classes. Deepwater Sculpin ( Myoxocephalus thompsonii ) increased by 47% in 2023 and were 33% of the long-term average. Slimy Sculpin ( Cottus cognatus ) increased to 60% of the long-term average but remained rare in bottom trawl catches. In contrast, biomass of Round Goby ( Neogobius melanostomus ), a non-native species similar ecologically to the sculpin species, remained near the record high biomass reached in 2022. Current lake conditions characterized by ongoing oligotrophication seem to favor native coregonines over non-native fishes. Use of complementary surveys (bottom trawl, acoustics) remains important for evaluating prey fish status in Lake Huron, where prey fish community dynamics vary by basin and prey fish responses to changing environmental conditions depend on species and/or habitat.

Lake Huron↗

USGS2023

Lake Trout population dynamics in the Northern Refuge of Lake Michigan: Importance of stocking rate

Objective The Northern Refuge of Lake Michigan was established under the auspices of the Great Lakes Fishery Commission in 1985 as an additional step toward restoring a self‐sustaining Lake Trout Salvelinus namaycush population to the lake. The overall goal of our study was to assess progress toward Lake Trout rehabilitation in the Northern Refuge through 2021. Methods We conducted annual (1992–2021) gill‐net surveys in the fall to assess the adult population and beam trawl surveys in the spring to assess naturally reproduced age‐0 Lake Trout. Result Spawner abundance averaged 45 fish • 305 m of gill net −1 • day −1 during 1992–1999, just 4 fish • 305 m of gill net −1 • day −1 during 2000–2014, and then 67 fish • 305 m of gill net −1 • day −1 during 2018–2021. Sea Lamprey Petromyzon marinus wounding rate decreased by nearly 90% between the 2000–2014 and 2015–2021 periods. The average annual mortality rate of adult Lake Trout decreased from 43% during the 1990s and 2000s to 22% during 2015–2021. All of these population dynamics were partly driven by changes in Lake Trout stocking rates, which declined by roughly 50% during 1994–1996 but then increased roughly twofold during 2006–2010 and remained at this higher level during 2010–2018. In 2021, early signs of natural recruitment of Lake Trout became evident. Beam trawling during June 2021 yielded a wild age‐0 Lake Trout, the first ever caught since the surveys began in 1992. In addition, 15 (4% of total catch) of the Lake Trout caught in the fall 2021 gill‐net survey were unclipped (wild) fish. Estimated ages of these wild fish indicated that natural recruitment had begun sometime around 2015. Conclusion With Alewife Alosa pseudoharengus abundance in Lake Michigan at record low levels, Sea Lamprey wounding rate greatly reduced, and Lake Trout spawner abundance at relatively high levels, the outlook for Lake Trout rehabilitation in the Northern Refuge holds promise.

Northern Refuge of Lake Michigan↗

USGS2023

Large-scale variation in lakebed properties interpreted from single-beam sonar in two Laurentian Great Lakes

Acoustic seabed classification (ASC) is an important method for understanding landscape-level physical and biological patterns in the aquatic environment. Bottom habitats in the Laurentian Great Lakes are poorly mapped to date, and will require a variety of contributors and data sources to complete. We repurposed a long-term split-beam echosounder dataset gathered for purposes of fisheries assessment to estimate lakebed properties utilizing unsupervised classification of echo return data. We interpreted first echo properties representing lakebed hardness and roughness to define and map three statistically supported lakebed classes revealed through cluster analysis. Our results indicate coherent and logical class boundaries and suggest that the dataset has promise for expanded use in ASC. To improve inferences using repeated measures, future work should focus on collecting ground truth information for areas previously surveyed and on collecting concurrent ground truth information when sampling acoustic data moving forward.

Michigan, Ontario, Wisconsin↗

USGS2023

Habitat selection by lake trout at reefs near Drummond Island, Lake Huron: An evaluation of physical characteristics used for spawning

Continued dependence on stocking of hatchery-reared lake trout, Salvelinus namaycush , in the Laurentian Great Lakes indicates recruitment bottlenecks still exist between spawning and the juvenile life stage (age-1). Possible impediments include poor habitat quality and an inability of hatchery-origin adults to select substrates that support successful incubation. Understanding of characteristics of suitable lake trout spawning habitat is limited but has centered on the cobble-contour framework, which identifies sloped reefs with cobble substrate and deep interstices to entrain eggs as spawning habitat. A novel sampling design based on acoustic-telemetry detections was used to evaluate relative importance of cobble-contour habitat characteristics (substrate size, homogeneity, interstitial depth, and slope) for predicting egg presence on two spawning reefs in northern Lake Huron. Fixed effect logistic regression models were used to relate egg presence to all possible combinations of measured physical characteristics. Physical characteristics of sites with naturally spawned eggs present varied, and no single best model predicted egg presence. Model selection and multi-model inference revealed slope to be the only informative predictor. Substrate size, homogeneity, and interstitial depth were not important. Embryo survival-to-hatch was also compared among sampling sites using in situ habitat bioassays seeded with hatchery fertilized embryos. No difference in embryo survival was observed between sites where naturally spawned eggs were present vs. absent. Over half of sites evaluated exceeded 75% survival. Naturally spawned eggs were observed at 25 of 57 sites. We suspect other characteristics such as interstitial flow could be helpful for predicting selection of lake trout spawning habitats.

Michigan↗

USGS2020

Evidence of spawning by lake trout Salvelinus namaycush on substrates at the base of large boulders in northern Lake Huron

Identification of lake trout spawning sites has focused on cobble substrates associated with bathymetric relief (e.g., ‘contour’ or ‘slope’ along reefs), but this ‘model’ may be narrow in scope. Previous telemetry work conducted near Drummond Island, USA, Lake Huron, identified egg presence in substrates at the base of large boulders (>1 m diameter); however, the extent of this phenomenon was unknown. Telemetry data paired with multi-beam bathymetry identified a 0.63 km 2 area used by lake trout characterized by low bathymetric relief and numerous (~269) large boulders (>1 m diameter) with small-diameter substrates at their bases. Diver surveys revealed egg presence at all 40 boulders surveyed, exclusively associated with clean gravel-cobble (0.6–42 cm) substrates in undercut areas beneath overhanging edges of boulders and in narrow spaces between adjacent boulders. Egg presence was not associated with boulder or substrate physical characteristics which highlighted the possible importance of interstitial currents. Successful incubation in these habitats was inferred by capture of free embryos and post-embryos the following spring using traps and an electrofishing ROV although at lower densities than at popular spawning habitats nearby (1–3 km away). Free embryos and post-embryos were also caught where eggs were not observed the previous fall including unexpectedly on top of boulders which suggested that post-hatch stages may move more than previously thought. Extensive use of boulder-associated habitats for spawning, egg incubation, and early growth suggested this undescribed habitat type may provide an unanticipated contribution to total available lake trout spawning habitat and recruitment in the Great Lakes.

Lake Huron↗

USGS2020

Diet and bathymetric distribution of juvenile Lake Trout Salvelinus namaycush in Lake Huron

Rehabilitation efforts for Lake Trout Salvelinus namaycush in Lake Huron have resulted in increased capture of young wild Lake Trout in annual bottom trawl surveys conducted by the U.S. Geological Survey. To better understand the ecology of juvenile (<400mm) Lake Trout, we summarized the spatial distribution of their capture in bottom trawls at six ports in Lake Huron during October/November 20082017 and analyzed diets of wild (n = 306 of 337 total) and hatchery-origin (n = 18 of 30 total) fish captured. Lake Trout ranged in size from 27 to 399mm, representing at least three age-classes, and 92% were wild origin. Most wild juvenile Lake Trout (83%) were captured at 4664 m depths at the two northernmost ports, typically below the thermocline. Mysis diluviana was the most prevalent prey type, found in 75% of wild fish with non-empty stomachs, followed by two non-native species: Spiny Water Flea Bythotrephes longimanus (31%) and Round Goby Neogobius melanostomus (12%). Small Lake Trout (<185mm) consumed invertebrates but transitioned to mostly fish-based diets by >185mm (age 2). The variety of taxa consumed by young Lake Trout increased with length. Further declines in Mysis populations due to increased predation pressure after the loss of Diporeia from the system may hinder the recovery of wild Lake Trout, and although they have been able to utilize invasive species as prey, impacts to Lake Trout growth remain unknown. Additional research on the habitat use and diets of wild juvenile Lake Trout may provide insight into the reasons behind the recent successful natural reproduction and recruitment of Lake Trout in Lake Huron.

Lake Huron↗

USGS2019

A conceptual framework for the identification and characterization of lacustrine spawning habitats for native lake charr Salvelinus namaycush

Lake charr Salvelinus namaycush are endemic to the formerly glaciated regions of North America and spawn primarily in lakes, unlike most other Salmoninae. Spawning habitats for lake charr are thought to be characterized by relatively large substrate particle sizes which provide sufficient interstitial spaces for egg incubation, but little is known about the physical processes that create or maintain suitable habitats. We review the literature on lake charr spawning habitat and present a conceptual framework that examines the roles of physical variables in creating the appropriate conditions for egg incubation. A critical underlying assumption of this framework is that lake charr will select spawning habitats that provide suitable hypolentic flows for egg incubation. We suggest that the characterization of lakebed surface roughness, current patterns, substrate particle size, and groundwater flows at multiple spatial scales may yield significant insight into the physical mechanisms supporting lacustrine spawning habitats for lake charr and will be useful in creating predictive models of these habitats. This framework may also apply to other lake-spawning lithophilic fish species.

Environmental Biology of Fishes↗

USGS2019

Status and trends of pelagic prey fish in Lake Huron, 2018

Scientists from the U.S. Geological Survey’s Great Lakes Science Center conducted integrated acoustic and mid-water trawl surveys of Lake Huron annually from 2004-2018. The 2018 survey was conducted during September and included transects in Lake Huron’s main basin, Georgian Bay, and North Channel. Mean lake-wide pelagic fish density was 1532 fish/ha and mean pelagic fish biomass was 4151 g/ha in 2018, which represents 128% and 108% of the long-term mean, respectively. Mean lake-wide biomass was 24% lower in 2018 and mean lake-wide fish density was 3.3% lower in 2018 as compared to 2017. Lake-wide density and biomass of small alewife (< 100 mm) increased significantly in 2018 and was due primarily to increased abundance in the western main basin. Lake-wide density of small rainbow smelt (< 90 mm) increased in 2018 and was a result of increased abundance in the eastern main basin, Georgian Bay, and the North Channel. Biomass of large rainbow smelt (> 90 mm) increased in 2018 and was a result of increased biomass in the main basin and Georgian Bay. Density of small bloater (< 120 mm) declined in the western main basin but increased in other regions of Lake Huron. Biomass of large bloater (> 120 mm) remained at levels similar to 2017 in most regions of Lake Huron. Emerald shiner density and biomass increased in 2018 due to increased abundance in the main basin south and main basin west regions. Density and biomass of large cisco (> 200 mm) declined marginally between 2017 and 2018, but cisco biomass and density has shown an increasing trend in the North Channel and Georgian Bay since 2011.

Lake Huron↗

USGS2018

Evidence of sound production by spawning lake trout (Salvelinus namaycush) in lakes Huron and Champlain

Two sounds associated with spawning lake trout ( Salvelinus namaycush ) in lakes Huron and Champlain were characterized by comparing sound recordings to behavioral data collected using acoustic telemetry and video. These sounds were named growls and snaps, and were heard on lake trout spawning reefs, but not on a non-spawning reef, and were more common at night than during the day. Growls also occurred more often during the spawning period than the pre-spawning period, while the trend for snaps was reversed. In a laboratory flume, sounds occurred when male lake trout were displaying spawning behaviors; growls when males were quivering and parallel swimming, and snaps when males moved their jaw. Combining our results with the observation of possible sound production by spawning splake ( Salvelinus fontinalis × Salvelinus namaycush hybrid), provides rare evidence for spawning-related sound production by a salmonid, or any other fish in the superorder Protacanthopterygii. Further characterization of these sounds could be useful for lake trout assessment, restoration, and control.

Michigan↗

USGS2018

Status and trends of pelagic prey fish in Lake Huron, 2017

Scientists from the U.S. Geological Survey’s Great Lakes Science Center conducted integrated acoustic and mid-water trawl surveys of Lake Huron in 1997 and annually from 2004-2017. The 2017 survey was conducted during September and included transects in Lake Huron’s main basin, Georgian Bay, and North Channel. Mean lake-wide pelagic fish density was 1582 fish/ha and mean pelagic fish biomass was 10.5 kg/ha in 2017, which represents 96% and 93% of the long-term mean respectively. Mean lake-wide biomass was 23% higher in 2017 as compared to 2016. The total estimated lake-wide standing stock biomass of pelagic fish species, excluding cisco, was ~49 kt (± 10.4 kt), consisting almost entirely of bloater (26.8 kt; 55%) and rainbow smelt (22 kt; 45%), with small contributions from sticklebacks (0.13 kt; 0.26 %), emerald shiner (0.09 kt; 0.18%), and alewife (0.004kt; <0.005%). Age-0 rainbow smelt abundance increased from 155 fish/ha in 2016 to 598 fish/ha in 2017. Biomass of age-1+ rainbow smelt increased from 2.5 kg/ha in 2016 to 4.1 kg/ha in 2017. Age-0 bloater abundance increased from 94 fish/ha in 2016 to 342 fish/ha in 2017. Biomass of age-1+ bloater in 2017 (5.0 kg/ha) remained at levels similar to 2016 (5.2 kg/ha). Emerald shiner density decreased from 38.6 fish/ha in 2016 to 19.5 fish/ha in 2017. Emerald shiner biomass remained at 0.02 kg/ha between 2016-2017 which represented 19% of the long-term mean. Cisco lake-wide mean biomass was estimated at 2.2 kg/ha and mean density was estimated at 5.1 fish/ha in 2017. Bloater and rainbow smelt will likely continue to be the primary pelagic species available to offshore predators in coming years.

Michigan, Ontario↗

USGS2017

Fine-scale acoustic telemetry reveals unexpected lake trout, Salvelinus namaycush, spawning habitats in northern Lake Huron, North America

Previous studies of lake trout, Salvelinus namaycush , spawning habitat in the Laurentian Great Lakes have used time- and labour-intensive survey methods and have focused on areas with historic observations of spawning aggregations and on habitats prejudged by researchers to be suitable for spawning. As an alternative, we used fine-scale acoustic telemetry to locate, describe and compare lake trout spawning habitats. Adult lake trout were implanted with acoustic transmitters and tracked during five consecutive spawning seasons in a 19–27 km 2 region of the Drummond Island Refuge, Lake Huron, using the VEMCO Positioning System. Acoustic telemetry revealed discrete areas of aggregation on at least five reefs in the study area, subsequently confirmed by divers to contain deposited eggs. Notably, several identified spawning sites would likely not have been discovered using traditional methods because either they were too small and obscure to stand out on a bathymetric map or because they did not conform to the conceptual model of spawning habitat held by many biologists. Our most unique observation was egg deposition in gravel and rubble substrates located at the base of and beneath overhanging edges of large boulders. Spawning sites typically comprised <10% of the reef area and were used consistently over the 5-year study. Evaluation of habitat selection from the perspective of fish behaviour through use of acoustic transmitters offers potential to expand current conceptual models of critical spawning habitat.

Ecology of Freshwater Fish↗