USGS ScienceSearch

Geology topics

Sean K. Rohan

Publications and source records attributed to Sean K. Rohan.

2 recordsLinked to original sources

Merging empirical and mechanistic approaches to modeling aquatic visual foraging using a generalizable visual reaction distance model

Visual encounter distance models are important tools for predicting how light and water clarity mediate visual predator-prey interactions that affect the structure and function of aquatic ecosystems at multiple spatial, temporal, and organizational scales. The two main varieties of visual encounter distance models, mechanistic and empirical, are used for similar purposes but take fundamentally different approaches to model development and have different strengths and weaknesses in terms of predictive accuracy, physical and biological interpretability of parameters, ability to incorporate outside information, and utility for knowledge transfer. To overcome weaknesses of existing mechanistic and empirical models and bridge the gap between approaches, we developed a generalized visual reaction distance model that relaxes assumptions of a widely-used mechanistic model that are violated in real predator-prey interactions. We compared the performance of the generalized visual reaction distance model to a widely used mechanistic model and an empirical visual encounter distance model by fitting models to data from four predator-prey experiments. The generalized visual reaction distance model substantially outperformed the other models in all cases based on fit to reaction distance data and presents an attractive alternative to prior models based on comparatively high predictive accuracy, use of interpretable parameters, and ability to incorporate outside information—characteristics that facilitate knowledge transfer.

Ecological Modelling

Using bottom trawls to monitor subsurface water clarity in marine ecosystems

Biophysical processes that affect subsurface water clarity play a key role in ecosystem function. However, subsurface water clarity is poorly monitored in marine ecosystems because doing so requires in-situ sampling that is logistically difficult to conduct and sustain. Novel solutions are thus needed to improve monitoring of subsurface water clarity. To that end, we developed a sampling method and data processing algorithm that enable the use of bottom trawl fishing gear as a platform for conducting subsurface water clarity monitoring using trawl-mounted irradiance sensors without disruption to fishing operations. The algorithm applies quality control checks to irradiance measurements and calculates the downwelling diffuse attenuation coefficient, K d , and optical depth, ζ – apparent optical properties (AOPs) that characterize the rate of decrease in downwelling irradiance and relative irradiance transmission to depth, respectively. We applied our algorithm to irradiance measurements, obtained using bottom-trawl-mounted archival tags equipped with a photodiode collected during NOAA’s Alaska Fisheries Science Center annual summer bottom trawl surveys of the eastern Bering Sea continental shelf from 2004 to 2018. We validated our AOPs by quantitatively comparing surface-weighted K d from tags to the multi-sensor K d (490) product from the Ocean Colour Climate Change Initiative project (OC-CCI) and qualitatively evaluating whether tag K d was consistent with patterns of subsurface chlorophyll-a concentrations predicted by a coupled regional physical-biological model (Bering10K-BESTNPZ). We additionally examined patterns and trends in water clarity in the eastern Bering Sea. Key findings are: 1) water clarity decreased significantly from 2004 to 2018; 2) a recurrent, pycnocline-associated, maximum in K d occurred over much of the northwestern shelf, putatively due to a subsurface chlorophyll maximum; and 3) a turbid bottom layer (nepheloid layer) was present over a large portion of the eastern Bering Sea shelf. Our study demonstrates that bottom trawls can provide a useful platform for monitoring water clarity, especially when trawling is conducted as part of a systematic stock assessment survey.

Alaska