USGS ScienceSearch

Geology topics

Sarah Shafer

Publications and source records attributed to Sarah Shafer.

14 recordsLinked to original sources

Plant macrofossil data for 48-0 ka in the USGS North American Packrat Midden Database, version 5.0

Plant macrofossils from packrat ( Neotoma spp.) middens provide direct evidence of past vegetation changes in arid regions of North America. Here we describe the newest version (version 5.0) of the U.S. Geological Survey (USGS) North American Packrat Midden Database. The database contains published and contributed data from 3,331 midden samples collected in southwest Canada, the western United States, and northern Mexico, with samples ranging in age from 48 ka to the present. The database includes original midden-sample macrofossil counts and relative-abundance data along with a standardized relative-abundance scheme that makes it easier to compare macrofossil data across midden-sample sites. In addition to the midden-sample data, this version of the midden database includes calibrated radiocarbon ( 14 C) ages for the midden samples and plant functional type (PFT) assignments for the midden taxa. We also provide World Wildlife Fund ecoregion assignments and climate and bioclimate data for each midden-sample site location. The data are provided in tabular (.xlsx), comma-separated values (.csv), and relational database (.mdb) files.

Scientific Data

Retreat and regrowth of the Greenland Ice Sheet during the Last Interglacial as simulated by the CESM2-CISM2 coupled climate–ice sheet model

During the Last Interglacial, approximately 129 to 116 ka (thousand years ago), the Arctic summer climate was warmer than the present, and the Greenland Ice Sheet retreated to a smaller extent than its current state. Previous model-derived and geological reconstruction estimates of the sea-level contribution of the Greenland Ice Sheet during the Last Interglacial vary widely. Here, we conduct a transient climate simulation from 127 to 119 ka using the Community Earth System Model (CESM2), which includes a dynamic ice sheet component (the Community Ice Sheet Model, CISM2) that is interactively coupled to the atmosphere, land, ocean, and sea ice components. Vegetation distribution is updated every 500 years based on biomes simulated using a monthly climatology to force the BIOME4 equilibrium vegetation model. Results show a substantial retreat of the Greenland Ice Sheet, reaching a minimum extent at 121.9 ka, equivalent to a 3.0 m rise in sea level relative to the present day, followed by gradual regrowth. In contrast, a companion simulation employing static vegetation based on pre-industrial conditions shows a much smaller ice-sheet retreat, highlighting the importance of the changes in high-latitude vegetation distribution for amplifying the ice-sheet response.

Greenland Ice Sheet

Assessing the uncertainties in climatic estimates based on vegetation assemblages: Examples from modern vegetation assemblages in the American Southwest

Assemblages of fossil plant remains have been widely used to reconstruct past climatic conditions, usually through the application of methods that involve either finding vegetation analogues on the modern landscape (and using the modern associated climatic values as the basis for an estimate) or using the modern climatic ranges of individual taxa in an assemblage to determine the range of a given climate variable that would allow these plant taxa to live together. Although these approaches are relatively straightforward, it is difficult to assess the uncertainties associated with each approach, particularly in regard to their application to plant macrofossil assemblages. To explore the uncertainty that may arise from inaccuracy and imprecision in climate reconstructions and from ecological considerations we used variants of both approaches to estimate climate from two data sets of modern vegetation assemblages from the southwestern United States: (1) 1752 gridded “virtual plant assemblages” based on plant range maps that provide uniform spatial coverage of the presence or absence of major woody plant taxa across the study area; and (2) 43 modern packrat ( Neotoma spp.) midden presence-absence assemblages that are similar to fossil midden assemblages. By comparing observed and estimated climate values, we evaluated the quality of the climate estimates, identified sources of uncertainty, and characterized the nature and magnitude of the effects of these uncertainties on the climate estimates. Uncertainties in estimating climate from vegetation assemblages arise because any given plant taxon (or assemblage) must have the resiliency to survive a range of climatic variability, and because of the strong intercorrelations among climatic variables in the modern climate data. Additional sources of uncertainty in climate estimates from plant assemblages include: (1) the modern climate and plant distribution data that are selected as the basis for estimation; (2) the particular quantitative approach that is used to estimate climate; (3) the sufficiency of the number of taxa in the analysis for providing an unbiased representation of the vegetation community as it existed for each time period in the analysis; and, (4) the location of the assemblage on the climatic and environmental gradients in the calibration data set for each climate variable under consideration. We conclude that vegetation assemblages can provide valid and reproducible estimates of climatic variables and that the primary trends and mapped patterns in the observed climate data can be reconstructed from such estimates. However, many factors may affect the quality of an estimate from a given plant assemblage, including aspects of data selection, data adequacy, methodologies, and the location of the assemblage site relative to gradients in the base climate data. It is particularly difficult to accurately estimate extreme values in the observed climate data, because estimated values from either end of an observed climate gradient necessarily “move toward the middle” of the gradient. In addition, the interval chosen to represent modern climate (here we used 1961 to 1990) may have a large impact on the size of the estimated difference between modern and past climate at a given site.

Arizona, California, Colorado, Nevada, New Mexico,

Extensive frost weathering across unglaciated North America during the Last Glacial Maximum

In unglaciated terrain, the imprint of past glacial periods is difficult to discern. The topographic signature of periglacial processes, such as solifluction lobes, may be erased or hidden by time and vegetation, and thus their import diminished. Belowground, periglacial weathering, particularly frost cracking, may have imparted a profound influence on weathering and erosion rates during past climate regimes. By combining a mechanical frost-weathering model with the full suite of Last Glacial Maximum climate simulations, we elucidate the meters-deep magnitude and continent-spanning expanse of frost weathering across unglaciated North America at ∼21 ka. The surprising extent of modeled frost weathering suggests, by proxy, the broad legacy of diverse periglacial processes. Complementing previous studies that championed the role of precipitation-driven changes in Critical Zone evolution, our results imply an additional strong temperature control on surficial process efficacy across much of modern North America, both during glacial periods and modern climes.

Geophysical Research Letters

A comparison of the CMIP6 midHolocene and lig127k simulations in CESM2

Results are presented and compared for the Community Earth System Model version 2 (CESM2) simulations of the middle Holocene (MH, 6 ka) and Last Interglacial (LIG, 127 ka). These simulations are designated as Tier 1 experiments ( midHolocene and lig127k ) for the Coupled Model Intercomparison Project phase 6 (CMIP6) and the Paleoclimate Modeling Intercomparison Project phase 4 (PMIP4). They use the low-top, standard 1° version of CESM2 contributing to CMIP6 DECK, historical, and future projection simulations, and to other modeling intercomparison projects. The midHolocene and lig127k provide the opportunity to examine the responses in CESM2 to the orbitally induced changes in the seasonal and latitudinal distribution of insolation. The insolation anomalies result in summer warming over the Northern Hemisphere continents, reduced Arctic summer minimum sea ice, and increased areal extent of the North African monsoon. The Arctic remains warm throughout the year. These changes are greater in the lig127k than midHolocene simulation. Other notable changes are reduction of the Niño3.4 variability and Drake Passage transport and a small increase in the Atlantic Meridional Overturning Circulation from the piControl to midHolocene to lig127k simulation. Comparisons to paleo-data and to simulations from previous model versions are discussed. Possible reasons for mismatches with the paleo-observations are proposed, including missing processes in CESM2, simplifications in the CMIP6 protocols for these experiments, and dating and calibration uncertainties in the data reconstructions.

Paleoceanography and Paleoclimatology

Understanding the uncertainty in global forest carbon turnover

The length of time that carbon remains in forest biomass is one of the largest uncertainties in the global carbon cycle, with both recent historical baselines and future responses to environmental change poorly constrained by available observations. In the absence of large-scale observations, models used for global assessments tend to fall back on simplified assumptions of the turnover rates of biomass and soil carbon pools. In this study, the biomass carbon turnover times calculated by an ensemble of contemporary terrestrial biosphere models (TBMs) are analysed to assess their current capability to accurately estimate biomass carbon turnover times in forests and how these times are anticipated to change in the future. Modelled baseline 1985–2014 global average forest biomass turnover times vary from 12.2 to 23.5 years between TBMs. TBM differences in phenological processes, which control allocation to, and turnover rate of, leaves and fine roots, are as important as tree mortality with regard to explaining the variation in total turnover among TBMs. The different governing mechanisms exhibited by each TBM result in a wide range of plausible turnover time projections for the end of the century. Based on these simulations, it is not possible to draw robust conclusions regarding likely future changes in turnover time, and thus biomass change, for different regions. Both spatial and temporal uncertainty in turnover time are strongly linked to model assumptions concerning plant functional type distributions and their controls. Thirteen model-based hypotheses of controls on turnover time are identified, along with recommendations for pragmatic steps to test them using existing and novel observations. Efforts to resolve uncertainty in turnover time, and thus its impacts on the future evolution of biomass carbon stocks across the world's forests, will need to address both mortality and establishment components of forest demography, as well as allocation of carbon to woody versus non-woody biomass growth.

Biogeosciences

Paleo calendar-effect adjustments in time-slice and transient climate-model simulations (PaleoCalAdjust v1.0): Impact and strategies for data analysis

The “paleo calendar effect” is a common expression for the impact that changes in the length of months or seasons over time, related to changes in the eccentricity of Earth's orbit and precession, have on the analysis or summarization of climate-model output. This effect can have significant implications for paleoclimate analyses. In particular, using a “fixed-length” definition of months (i.e., defined by a fixed number of days), as opposed to a “fixed-angular” definition (i.e., defined by a fixed number of degrees of the Earth's orbit), leads to comparisons of data from different positions along the Earth's orbit when comparing paleo with modern simulations. This effect can impart characteristic spatial patterns or signals in comparisons of time-slice simulations that otherwise might be interpreted in terms of specific paleoclimatic mechanisms, and we provide examples for 6, 97, 116, and 127 ka. The calendar effect is exacerbated in transient climate simulations in which, in addition to spatial or map-pattern effects, it can influence the apparent timing of extrema in individual time series and the characterization of phase relationships among series. We outline an approach for adjusting paleo simulations that have been summarized using a modern fixed-length definition of months and that can also be used for summarizing and comparing data archived as daily data. We describe the implementation of this approach in a set of Fortran 90 programs and modules (PaleoCalAdjust v1.0).

Geoscientific Model Development

Projected future vegetation changes for the northwest United States and southwest Canada at a fine spatial resolution using a dynamic global vegetation model.

Future climate change may significantly alter the distributions of many plant taxa. The effects of climate change may be particularly large in mountainous regions where climate can vary significantly with elevation. Understanding potential future vegetation changes in these regions requires methods that can resolve vegetation responses to climate change at fine spatial resolutions. We used LPJ, a dynamic global vegetation model, to assess potential future vegetation changes for a large topographically complex area of the northwest United States and southwest Canada (38.0–58.0°N latitude by 136.6–103.0°W longitude). LPJ is a process-based vegetation model that mechanistically simulates the effect of changing climate and atmospheric CO 2 concentrations on vegetation. It was developed and has been mostly applied at spatial resolutions of 10-minutes or coarser. In this study, we used LPJ at a 30-second (~1-km) spatial resolution to simulate potential vegetation changes for 2070–2099. LPJ was run using downscaled future climate simulations from five coupled atmosphere-ocean general circulation models (CCSM3, CGCM3.1(T47), GISS-ER, MIROC3.2(medres), UKMO-HadCM3) produced using the A2 greenhouse gases emissions scenario. Under projected future climate and atmospheric CO 2 concentrations, the simulated vegetation changes result in the contraction of alpine, shrub-steppe, and xeric shrub vegetation across the study area and the expansion of woodland and forest vegetation. Large areas of maritime cool forest and cold forest are simulated to persist under projected future conditions. The fine spatial-scale vegetation simulations resolve patterns of vegetation change that are not visible at coarser resolutions and these fine-scale patterns are particularly important for understanding potential future vegetation changes in topographically complex areas.

PLoS ONE

Early-Holocene warming in Beringia and its mediation by sea-level and vegetation changes

Arctic land-cover changes induced by recent global climate change (e.g., expansion of woody vegetation into tundra and effects of permafrost degradation) are expected to generate further feedbacks to the climate system. Past changes can be used to assess our understanding of feedback mechanisms through a combination of process modeling and paleo-observations. The subcontinental region of Beringia (northeastern Siberia, Alaska, and northwestern Canada) was largely ice-free at the peak of deglacial warming and experienced both major vegetation change and loss of permafrost when many arctic regions were still ice covered. The evolution of Beringian climate at this time was largely driven by global features, such as the amplified seasonal cycle of Northern Hemisphere insolation and changes in global ice volume and atmospheric composition, but changes in regional land-surface controls, such as the widespread development of thaw lakes, the replacement of tundra by deciduous forest or woodland, and the flooding of the Bering–Chukchi land bridge, were probably also important. We examined the sensitivity of Beringia's early Holocene climate to these regional-scale controls using a regional climate model (RegCM). Lateral and oceanic boundary conditions were provided by global climate simulations conducted using the GENESIS V2.01 atmospheric general circulation model (AGCM) with a mixed-layer ocean. We carried out two present-day simulations of regional climate – one with modern and one with 11 ka geography – plus another simulation for 6 ka. In addition, we performed five ~ 11 ka climate simulations, each driven by the same global AGCM boundary conditions: (i) 11 ka Control , which represents conditions just prior to the major transitions (exposed land bridge, no thaw lakes or wetlands, widespread tundra vegetation), (ii) sea-level rise, which employed present-day continental outlines, (iii) vegetation change, with deciduous needleleaf and deciduous broadleaf boreal vegetation types distributed as suggested by the paleoecological record, (iv) thaw lakes, which used the present-day distribution of lakes and wetlands, and (v) post-11 ka All , incorporating all boundary conditions changed in experiments (ii)–(iv). We find that regional-scale controls strongly mediate the climate responses to changes in the large-scale controls, amplifying them in some cases, damping them in others, and, overall, generating considerable spatial heterogeneity in the simulated climate changes. The change from tundra to deciduous woodland produces additional widespread warming in spring and early summer over that induced by the 11 ka insolation regime alone, and lakes and wetlands produce modest and localized cooling in summer and warming in winter. The greatest effect is the flooding of the land bridge and shelves, which produces generally cooler conditions in summer but warmer conditions in winter and is most clearly manifest on the flooded shelves and in eastern Beringia. By 6 ka continued amplification of the seasonal cycle of insolation and loss of the Laurentide ice sheet produce temperatures similar to or higher than those at 11 ka, plus a longer growing season.

Alaska

Understanding the spatial heterogeneity of global environmental change in mountain regions

One of the challenges for global environmental change research is to understand how future climate changes will be expressed in mountain regions. The physiographic complexity of mountains creates environments that can be highly variable over relatively short distances. This spatial heterogeneity reflects a hierarchy of environmental controls. At regional scales, insolation and atmospheric circulation features determine the dominant regional climate patterns that affect mountain regions. At finer spatial scales, substrate, aspect, elevation, and a number of other environmental factors influence ecosystem dynamics. Vegetation, for example, is affected by all levels of this hierarchy, from regional-scale climate regimes down to site-specific features, such as substrate type (cf. Körner, this volume).

western United States

Vital signs monitoring plan for the Klamath Network: Phase I report

This report chronicles the Phase 1 stage of the vital signs monitoring program for the Klamath Network. It consists of two chapters and eleven appendixes. The purposes of Chapter One are to 1) describe the network administrative structure and approach to planning; 2) introduce the Klamath Network parks, their resources, and environmental settings; 3) explain the need for monitoring changes in resources and supporting environments; 4) identify key information gaps that limit understanding of how to best achieve these monitoring goals. The purpose of Chapter Two is to develop the descriptive information provided in Chapter One into a conceptual basis for vital signs monitoring and to present the Network’s initial suite of conceptual models. The Report Appendices provide in-depth information on a variety of topics researched in preparation of the report, including: detailed natural resource profiles for each park, supporting policies and guidelines, regional fire regimes, vegetation types of the parks, exotic species threats, interagency monitoring programs, air issues, water quality (Phase 1 Report), Network vital signs (Scoping Summary Report), rare species, and rare habitats of the parks.

Report

Quaternary vegetation and climate change in the western United States: Developments, perspectives, and prospects

This chapter explores the strengths and shortcomings of the major sources of data on Quaternary vegetation and climate change and discusses the use of models as a means to explore past and potential future environmental changes. The flora and major vegetation types of the western United States are present for several million years. Ongoing changes in atmospheric chemistry , climate, and human activities may lead to major vegetation changes over the coming decades to centuries. The combination of observations from the paleoenvironmental record, modern ecological studies, and modeling now permit assessments of the magnitude of potential future changes in the context of natural variability. They also provide opportunities for hypothesis testing and identification of the processes driving past changes in vegetation and climate. Understanding the dynamics of paleoenvironmental change can contribute to current conservation and natural resource management efforts and will help conservation and natural resource managers anticipate the potential rate, magnitude, and complexity of future vegetation change.

western United States

Potential changes in the distributions of western North America tree and shrub taxa under future climate scenarios

Increases in atmospheric greenhouse gases are driving significant changes in global climate. To project potential vegetation response to future climate change, this study uses response surfaces to describe the relationship between bioclimatic variables and the distribution of tree and shrub taxa in western North America. The response surfaces illustrate the probability of the occurrence of a taxon at particular points in climate space. Climate space was defined using three bioclimatic variables: mean temperature of the coldest month, growing degree days, and a moisture index. Species distributions were simulated under present climate using observed data (1951–80, 30-year mean) and under future climate (2090–99, 10-year mean) using scenarios generated by three general circulation models—HADCM2, CGCM1, and CSIRO. The scenarios assume a 1% per year compound increase in greenhouse gases and changes in sulfate (SO 4 ) aerosols based on the Intergovernmental Panel on Climate Change (IPCC) IS92a scenario. The results indicate that under future climate conditions, potential range changes could be large for many tree and shrub taxa. Shifts in the potential ranges of species are simulated to occur not only northward but in all directions, including southward of the existing ranges of certain species. The simulated potential distributions of some species become increasingly fragmented under the future climate scenarios, while the simulated potential distributions of other species expand. The magnitudes of the simulated range changes imply significant impacts to ecosystems and shifts in patterns of species diversity in western North America.

Ecosystems