Robert L. Sinsabaugh | USGS Science

USGS2018

Are fungal networks key to dryland primary production?

In low-resource ecosystems, competition among primary producers can be reduced through the partitioning of limiting resources in space or time. Partitioning, coupled with species interactions, can be a source of ecosystem stability by retaining resources within a biotic “loop” and slowing losses due to physical processes, such as erosion, gaseous loss, or leaching. Such coupling occurs in marine food webs (the microbial loop), where positive interactions among microbes limit losses of nutrients that would otherwise drop to the ocean floor (Fenchel, 2008). Likewise, mycorrhizal fungi in tropical rainforests may rapidly recycle litter nutrients back to canopy trees, preventing leaching driven by high rainfall (Hattenschwiler et al., 2011). Such dynamics differ from the paradigm for most mesic, terrestrial ecosystems, in which the primary source of nutrients for primary production is the decomposition of soil organic matter (SOM, Schimel and Bennett, 2004). Thus, in ecosystems that lack large reserves of soil organic matter to supply nutrients to producers (e.g., drylands, where sparse litter yields low SOM), biotic retention of nutrients may be particularly critical to primary production and ecosystem dynamics.

American Journal of Botany↗

USGS2014

Extracellular enzyme kinetics scale with resource availability

Microbial community metabolism relies on external digestion, mediated by extracellular enzymes that break down complex organic matter into molecules small enough for cells to assimilate. We analyzed the kinetics of 40 extracellular enzymes that mediate the degradation and assimilation of carbon, nitrogen and phosphorus by diverse aquatic and terrestrial microbial communities (1160 cases). Regression analyses were conducted by habitat (aquatic and terrestrial), enzyme class (hydrolases and oxidoreductases) and assay methodology (low affinity and high affinity substrates) to relate potential reaction rates to substrate availability. Across enzyme classes and habitats, the scaling relationships between apparent V max and apparent K m followed similar power laws with exponents of 0.44 to 0.67. These exponents, called elasticities, were not statistically distinct from a central value of 0.50, which occurs when the K m of an enzyme equals substrate concentration, a condition optimal for maintenance of steady state. We also conducted an ecosystem scale analysis of ten extracellular hydrolase activities in relation to soil and sediment organic carbon (2,000–5,000 cases/enzyme) that yielded elasticities near 1.0 (0.9 ± 0.2, n = 36). At the metabolomic scale, the elasticity of extracellular enzymatic reactions is the proportionality constant that connects the C:N:P stoichiometries of organic matter and ecoenzymatic activities. At the ecosystem scale, the elasticity of extracellular enzymatic reactions shows that organic matter ultimately limits effective enzyme binding sites. Our findings suggest that one mechanism by which microbial communities maintain homeostasis is regulating extracellular enzyme expression to optimize the short-term responsiveness of substrate acquisition. The analyses also show that, like elemental stoichiometry, the fundamental attributes of enzymatic reactions can be extrapolated from biochemical to community and ecosystem scales.

Biogeochemistry↗