USGS ScienceSearch

Geology topics

Raymond Carthy

Publications and source records attributed to Raymond Carthy.

18 recordsLinked to original sources

Surface detection probability of leatherback turtles at the Rio de La Plata and its Maritime Front: Implications for density estimates

The Río de la Plata and its Maritime Front (RLPMF) serve as a key, seasonal feeding area for leatherback sea turtles ( Dermochelys coriacea ) in the Southwestern Atlantic Ocean. While leatherback turtles can be frequently observed in these waters, there is little data on regional abundances and relative densities, which hinders threat assessments and the development of effective conservation strategies. Consequently, given that in this region parameters needed for in-water leatherback turtle density estimates have not been previously published, the objective of this study was to investigate the surface availability bias, g(0). This parameter requires region-specific considerations for factors like aggregation behaviour and environmental conditions. To address these gaps, our study assessed leatherback turtle aggregations in the RLPMF using satellite tag data and direct drone observations. Through satellite tracking, surfacing behaviour data of six leatherback turtles, g(0) was estimated to be 0.3183. This analysis represents the first of its kind in the region, providing an important contribution to sea turtle conservation studies. It enables substantial progress in characterising surface time, which is essential for understanding leatherback diving and surface behaviour in the region and for improving relative density estimates in the Southwestern Atlantic Ocean. Furthermore, this contribution represents a resource for planning more effective conservation strategies to mitigate threats and promote population recovery.

Río de la Plata and its Maritime Front

Ecotoxicological profile of a high prevalence marine disease area in Florida's Gulf coast

Pervasive marine pollution can have devastating effects on ocean health. Polychlorinated Biphenyls (PCB), Polycyclic Aromatic Hydrocarbons (PAH), and Organochlorine Pesticides (OCP) are of particular concern given their high level of toxicity and carcinogenicity. These compounds originate from anthropogenic activity, therefore are often ubiquitous in coastal environments close to human sources. Marine turtles in coastal Florida (USA) are affected by fibropapillomatosis, a tumor-causing panzootic with highly debilitating symptoms. Despite repeated associations between fibropapillomatosis occurrence and carcinogenic pollution, the ecotoxicological status of high disease areas in the Florida Gulf has been unknown. Our study deployed passive sampling devices along a structured inshore-to-offshore coastal grid to generate the first comprehensive dataset on the concentration and diversity of oncogenic pollutants in Crystal River, Florida, where juvenile green turtles exhibit a fibropapillomatosis prevalence of 74%. Multiple OCP, PAH, and PCB compounds were detected for a total chemical concentration of 16,086.98 pg/L (Σ OCP 45.51 pg/L + Σ PAH 16,014.53 pg/L + Σ PCB 26.94 pg/L). Density and composition of carcinogenic pollution was found to be significantly lower in offshore green turtle habitats compared to inshore habitats (p=0.02), suggesting multiple potential contamination sources along the coastline. The carcinogenic compounds detected have been shown to have associations with fibropapillomatosis in other parts of the world, as well as having wider ecosystem implications. Our work contributes to the body of knowledge correlating the emerging threat of harmful ocean pollution and marine wildlife diseases.

Florida

Wide-ranging migration of post-nesting hawksbill sea turtles (Eretmochelys imbricata) from the Caribbean island of Nevis

Little is known about the post-nesting migration and foraging areas of hawksbill turtles ( Eretmochelys imbricata ) nesting on St. Kitts and Nevis, an important nesting site for hawksbills in the eastern Caribbean. To elucidate internesting, migration and foraging patterns of hawksbills from Nevis, we satellite tagged 28 post-nesting turtles between 2006 and 2022. Internesting, migrating and foraging activity periods were determined using a switching state–space model to estimate the behavioral state of the turtle’s locations. Twenty-five turtles (83–2,171 tracking days) established a foraging area, migrating between 5.3 and 2,799.5 km from the nesting beach. Twenty-one turtles were tracked during internesting movements with internesting areas ranging between 1.9 and 28.2 km 2 . Nearly half of the internesting centroids were located closer to a different beach than the beach where the turtle was originally encountered nesting. Hawksbills crossed through 29 different Exclusive Economic Zones (EEZs), including zones with legal sea turtle fisheries or traditional subsistence use. Core foraging areas (KDE 50%) ranged between 3.8 and 69.0 km 2 . Nearly a third of foraging centroids were within a Marine Protected Area (MPA), while nearly a quarter were within a legal sea turtle fishery EEZ. Hawksbills nesting on Nevis disperse to local, regional, and Caribbean wide foraging grounds, emphasizing the necessity of cooperative efforts to protect turtles and their habitats to ensure support of the recovery of hawksbill turtles throughout the wider Caribbean.

Caribbean, Nevis

Diet of Dermatemys mawii, an aquatic turtle that relies heavily on terrestrial vegetation

Dermatemys mawii is a critically endangered freshwater turtle endemic to Central America. In the wild, these turtles are thought to be wholly herbivorous as adults and feed on a variety of vegetation; however, no studies have quantitatively assessed potential dietary differences based on biotic and abiotic factors. The purpose of our study was to describe and quantify the wild diet of D. mawii and assess differences based on habitat, maturity, and sex. We evaluated the stomach contents of 66 turtles legally harvested by local hunters for personal consumption throughout the country of Belize. Percent volume (by displacement) and percent frequency of each stomach item were used to calculate an index of relative importance (IRI). One algal and 6 plant families contributed to an overall diet composition consisting of leaves, flowers, stems, seedpods, seeds, and fruit. Rocks and invertebrates were also consumed, although we believe these to be incidental consumption. The leaves of the riparian tree Inga edulis were present in 73.1% of turtle stomachs and accounted for almost half of the total volume of all stomach contents combined. We used Spearman rank correlation coefficients to test the null hypothesis that there was no correlation in the rankings of stomach items (i.e., there were differences) when comparing turtles by habitat, age, and sex. There were significant differences in the ranking of food items between river and lagoon habitats, with lagoon turtles relying heavily on the algae Nitella sp.; however, the stomach contents from both habitats were equally diverse (H rivers = 1.68, H lagoons = 1.64). There were no differences in IRIs between adults and juveniles or between males and females. Our results emphasize the importance of habitat in D. mawii diet selection and the importance of leaves from riparian plants species that are shed into their aquatic habitats.

Chelonian Conservation and Biology

Accuracy and precision of sea-finding orientation as a function of dune proximity in hatchlings of two species of sea turtles

Context: Sea turtle hatchlings generally emerge at night from nests on sand beaches and immediately orient using visual cues, which are believed to entail the difference in brightness between the light seen in the seaward direction and that seen in the duneward direction. Aim: The aim of this study was to understand how dune proximity affected hatchling orientations in two sea turtle species that share a nesting beach 15 km long and 25.3 ± 9.4 m ( N = 215) from dune to waterline, with low to moderate artificial light nearby. Methods: For hatchling loggerhead and green turtles, we measured accuracy and precision of orientation, tested differences in distance from nest to dune, and investigated the effect of dune proximity on hatchling orientation. Key results: We found a significant decrease in hatchling orientation accuracy and precision in both species as the distance increased from nests to dune. Loggerhead and green turtles showed similar orientation ability when in the same proximity to the dune. Conclusions: We conclude that dune features provide important cues for hatchling orientation on sea turtle nesting beaches. Implications: Restoring and maintaining natural beach profiles, especially dune systems, is likely to increase the accuracy and precision of sea finding in hatchling sea turtles.

Florida

A coupled human and natural systems framework to characterize emerging infectious diseases: The case of fibropapillomatosis in marine turtles

Emerging infectious diseases of wildlife have markedly increased in the last few decades. Unsustainable, continuous, and rapid alterations within and between coupled human and natural systems have significantly disrupted wildlife disease dynamics. Direct and indirect anthropogenic effects, such as climate change, pollution, encroachment, urbanization, travel, and trade, can promote outbreaks of infectious diseases in wildlife. We constructed a coupled human and natural systems framework identifying three main wildlife disease risk factors behind these anthropogenic effects: (i) immune suppression, (ii) viral spillover, and (iii) disease propagation. Through complex and convoluted dynamics, each of the anthropogenic effect listed in our framework can lead, to some extent, to one or more of the identified risk factors accelerating disease outbreaks in wildlife. In this review, we present a novel framework to study anthropogenic impacts within coupled human and natural systems that facilitate emergence of infectious disease involving wildlife. We demonstrate the utility of the framework by applying it to Fibropapillomatosis disease of marine turtles. We aim to articulate the intricate and complex nature of anthropogenically-exacerbated wildlife infectious diseases as multifactorial. This paper supports the adoption of a One Health approach and invites the collaboration of multiple disciplines for the achievement of effective and long-lasting conservation and wildlife emerging diseases mitigation outcomes.

Animals

The Bathy-drone: An autonomous unmanned drone-tethered sonar system

A unique drone-based system for underwater mapping (bathymetry) was developed at the University of Florida. The system, called the “Bathy-drone”, comprises a drone that drags, via a tether, a small vessel on the water surface in a raster pattern. The vessel is equipped with a recreational commercial off-the-shelf (COTS) sonar unit that has down-scan, side-scan, and chirp capabilities and logs GPS-referenced sonar data onboard or transmitted in real time with a telemetry link. Data can then be retrieved post mission and plotted in various ways. The system provides both isobaths and contours of bottom hardness. Extensive testing of the system was conducted on a 5 acre pond located at the University of Florida Plant Science and Education Unit in Citra, FL. Prior to performing scans of the pond, ground-truth data were acquired with an RTK GNSS unit on a pole to precisely measure the location of the bottom at over 300 locations. An assessment of the accuracy and resolution of the system was performed by comparison to the ground-truth data. The pond ground truth had an average depth of 2.30 m while the Bathy-drone measured an average 21.6 cm deeper than the ground truth, repeatable to within 2.6 cm. The results justify integration of RTK and IMU corrections. During testing, it was found that there are numerous advantages of the Bathy-drone system compared to conventional methods including ease of implementation and the ability to initiate surveys from the land by flying the system to the water or placing the platform in the water. The system is also inexpensive, lightweight, and low-volume, thus making transport convenient. The Bathy-drone can collect data at speeds of 0–24 km/h (0–15 mph) and, thus, can be used in waters with swift currents. Additionally, there are no propellers or control surfaces underwater; hence, the vessel does not tend to snag on floating vegetation and can be dragged over sandbars. An area of more than 10 acres was surveyed using the Bathy-drone in one battery charge and in less than 25 min.

Drones

Deep and machine learning image classification of coastal wetlands using unpiloted aircraft system multispectral images and lidar datasets

The recent developments of new deep learning architectures create opportunities to accurately classify high-resolution unoccupied aerial system (UAS) images of natural coastal systems and mandate continuous evaluation of algorithm performance. We evaluated the performance of the U-Net and DeepLabv3 deep convolutional network architectures and two traditional machine learning techniques (support vector machine (SVM) and random forest (RF)) applied to seventeen coastal land cover types in west Florida using UAS multispectral aerial imagery and canopy height models (CHM). Twelve combinations of spectral bands and CHMs were used. Our results using the spectral bands showed that the U-Net (83.80–85.27% overall accuracy) and the DeepLabV3 (75.20–83.50% overall accuracy) deep learning techniques outperformed the SVM (60.50–71.10% overall accuracy) and the RF (57.40–71.0%) machine learning algorithms. The addition of the CHM to the spectral bands slightly increased the overall accuracy as a whole in the deep learning models, while the addition of a CHM notably improved the SVM and RF results. Similarly, using bands outside the three spectral bands, namely, near-infrared and red edge, increased the performance of the machine learning classifiers but had minimal impact on the deep learning classification results. The difference in the overall accuracies produced by using UAS-based lidar and SfM point clouds, as supplementary geometrical information, in the classification process was minimal across all classification techniques. Our results highlight the advantage of using deep learning networks to classify high-resolution UAS images in highly diverse coastal landscapes. We also found that low-cost, three-visible-band imagery produces results comparable to multispectral imagery that do not risk a significant reduction in classification accuracy when adopting deep learning models.

Florida

Tidally-driven gas exchange in beaches: Implications for sea turtle nest success

The success of individual sea turtle nests is influenced by nest location on the beach and the resulting incubation environment. Several abiotic factors affect nest incubation, and thus nest success, but tides and gas exchange are two of the most important. The effects of tides on nest success have been well documented in regard to overwash and inundation events. However, the possible effect of tidally-driven gas exchange has received little attention. The incursion and retreat of the saltwater wedge may cause substantial movement of gases through the beach during the tidal cycle. This study quantifies the differences in tidally-driven gas exchange among beach types and shoreline elevation levels. Carbon dioxide (CO 2 ) efflux was used as a means of measuring gas movement through the beach to examine tidal effects across different beach zones and among different beach types. CO 2 efflux was measured throughout the tidal cycle at three distinct beaches (accreting, eroding, and nourished) at Cape San Blas, Florida. There was a general pattern of CO 2 efflux rising and falling throughout the tidal cycle on each beach and a difference in the CO 2 efflux observed among beaches and beach zones. Efflux patterns at the nourished and eroding beaches were similar, but the nourished beach exhibited a decreased and dampened CO 2 efflux pattern throughout the course of the tidal cycle. Analyses of the hatchling turtle emergence success data from 2011 to 2014 for the three beaches found that emergence success differed among the three beaches. The highest emergence success was on the nourished beach, which exhibited a relatively consistent efflux pattern. These results suggest that tidally-driven gas exchange may have implications on nest incubation and survival and are a consideration in beach restoration management and best practices for coastline conservation.

Florida

Using systems thinking to inform management of imperiled species: A case study with sea turtles

Management of imperiled species facing spatiotemporally dynamic threats is difficult. Systems thinking can inform their management by quantifying the impacts that they face. We apply systems thinking to the Northern Gulf of Mexico (NGM) loggerhead ( Caretta caretta ) Recovery Unit (RU), one of the smallest subpopulations of loggerheads nesting in the USA. We characterized disturbances to nests, management actions, and hatchling production across 12 nesting beaches used by this RU to explore how hatchling production would increase if disturbances were mitigated. Annual hatchling production at sites ranged from 470 to 18,191 hatchlings/year. Washovers (19.3% nests/year), washouts (17.9% nests/year), and predation (13% nests/year) were the most common annual disturbances across sites. Focusing on the most impactful disturbances at just five sites could increase annual NGM RU hatchling production by 2.2–6.7%. Efforts to mitigate washovers and washouts are ongoing in Alabama, but these may be futile against tropical cyclones, which accounted for >80% of washouts in the present study, and further require careful examination of associated adverse side-effects. Efforts to mitigate predation are common throughout this RU, but require improved knowledge of predator ecology to reach full potential. Systems thinking allowed us to create a simple model for assessing disturbances and management strategies in terms of hatchling sea turtles. This model can be augmented to run dynamic simulations of how disturbances and management actions impact hatchling production, and can be applied to other species with similar reproductive strategies.

Alabama, Florida

Environmental factors predicting the orientation of sea turtle hatchlings on a naturally lighted beach: A baseline for light-management goals

On sea turtle nesting beaches, artificial lighting associated with human development interferes with hatchling orientation from nest to sea. Although hatchling disorientation has been documented for many beaches, data that managers can use in understanding, predicting, and managing the issue are of limited detail. The present study provides baseline hatchling orientation data that can be compared to those from beaches with artificial lighting to prioritize light-management efforts there. In 2014, the precision of hatchling orientation was quantified for 87 nests on a naturally lighted beach that had little to no artificial lighting. Precision of hatchling orientation was regressed against seven environmental variables: beach slope, distance from nest to dune, dune height, apparent dune silhouette height relative to nest site, moon illumination percentage, cloud cover percentage, and relative humidity. Results favored a regression model that included distance from nest to dune, with shorter distances from the dune predicting a narrower angular range (i.e., greater precision) of hatchling orientation. The study confirmed findings of an earlier laboratory experiment that highlighted the importance to accurate hatchling orientation of a dark silhouette (dune) on the side of the nest site opposite the ocean side. Reducing artificial light and promoting the planting of pioneer plants that assist dune formation can increase hatchling survival.

Florida

Using growth rates to estimate the minimum age and size at sexual maturity in a captive population of the critically endangered Central American river turtle Dermatemys mawii

The Central American river turtle Dermatemys mawii is a critically endangered species that has incurred substantial losses over the last several decades due to overhunting. This species is now being considered for head-starting programs (i.e. captive breeding of turtles for wild release). However, relatively little is known about their life history characteristics, especially with respect to growth and sexual maturation. A robust knowledge of D. mawii life history traits is important in developing conservation management plans. Our research is the first known study to maintain hatchlings, juveniles, and adults in captivity with regular morphometric data collection. We quantified growth rates (cm yr-1) and calculated growth parameters (e.g. growth coefficients) to estimate body size and age at onset of sexual maturity in a group of wild-caught but captive-held and captive-bred D. mawii in Belize. Sizes at the onset of sexual maturity were inferred by segmented linear regressions that identified changes in growth rate by body size. Asymptotic sizes and growth coefficients were calculated using the Fabens method and the Wang method. Parameters from these models were then applied to a modified von Bertalanffy growth equation to estimate age at the onset of sexual maturity. Male and female D. mawii begin sexual maturation at ca. 38.0 cm and 40.0 cm straight-line carapace length, respectively. We estimated ages associated with these sizes at 13.5-16.9 yrs (males) and 13.6-17.3 yrs (females). No previous literature on growth rates or age at maturation for wild or captive D. mawii has been reported, so our results serve as a starting point in conservation management. Given the life history trait of delayed sexual maturity (>10 years), D. mawii may be more sensitive to losses of the adult population. Therefore, the importance of captive breeding and head-starting programs may be concomitant with protecting wild, adult populations.

Toledo

Use of remote sensing tools to predict focal areas for sea turtle conservation in the Southwestern Atlantic

Fisheries bycatch of non-target species in the commercial fleet is a major source of anthropogenic injury and mortality for sea turtles and marine megafauna. The Río de la Plata maritime front (RLPMF) and its adjacent international waters – comprising part of the Argentine and Uruguayan exclusive economic zones, is a highly important fishing ground in the south-western Atlantic Ocean as well as feeding and development grounds for sea turtles. This paper analyses the distribution of the bottom and pelagic trawling fishery within the RLPMF using information from Vessel Satellite Monitoring System. With this information, areas of highest trawling intensity were defined and further evaluated their overlap with sea turtle habitat-use areas from available sea turtle satellite tracking information. Results besides identifying high-susceptibility areas for sea turtle bycatch by the commercial trawler fleet along the RLPMF, provide predictive tools to identify vulnerable areas to interaction of sea turtles and the commercial fishing fleet. Implementation of bycatch mitigation measures, such as reduced fishing effort areas by the Argentine and Uruguayan fisheries management agencies has the potential to benefit the fisheries as well as marine megafauna. Furthermore, there is a need for additional research on the impact that this fleet can have on sea turtles present in the area.

Rio de la Plata

The incubation environment of nests deposited by a genetically distinct group of loggerhead sea turtles in Northwest Florida

The warming climate presents a challenge to conservation of all threatened and endangered species but particularly to those that exhibit temperature-dependent sex determination such as sea turtles. Changes in temperature may result in changes in the sex ratio of the population which can directly affect reproductive rate, abundance and population dynamics. The NW Atlantic loggerhead turtle population is listed as threatened under the U.S. Endangered Species Act, and one of the smallest subpopulations in this assemblage nests in the northern Gulf of Mexico. Here, we describe the incubation environment of northern Gulf of Mexico loggerheads nesting at several different beaches in Northwest Florida. Temperature dataloggers were placed inside and adjacent to nests on different nesting beaches across Northwest Florida. In addition, incubation durations were recorded from nests deposited on those same beaches. Internal nest temperatures were higher than those in the sand, however sand temperatures were correlated with incubation durations. Sand temperatures differed along the vertical beach profile and according to depth. Temperatures also differed along a geographic gradient across Northwest Florida and in relation to distance from the Apalachicola River. Incubation durations followed a similar pattern. Mean monthly temperatures at all sites were at or lower than 29 °C (range 23.1 °C–29.6 °C at the dunes; 23.8 °C–29.4 °C at mid-beach) which suggests nests in Northwest Florida may be producing a significant number of males, in contrast to the large number of females being produced on Florida's Atlantic coast. The temperatures and incubation durations on these nesting beaches may be regulated by differing sources of sand and beach orientations across Northwest Florida.

Northwest Florida

Geometric targets for UAS Lidar

Lidar from small unoccupied aerial systems (UAS) is a viable method for collecting geospatial data associated with a wide variety of applications. Point clouds from UAS lidar require a means for accuracy assessment, calibration, and adjustment. In order to carry out these procedures, specific locations within the point cloud must be precisely found. To do this, artificial targets may be used for rural settings, or anywhere there is a lack of identifiable and measurable features in the scene. This paper presents the design of lidar targets for precise location based on geometric structure. The targets and associated mensuration algorithm were tested in two scenarios to investigate their performance under different point densities, and different levels of algorithmic rigor. The results show that the targets can be accurately located within point clouds from typical scanning parameters to <2 cm &#x3C3; , "> σ , and that including observation weights in the algorithm based on propagated point position uncertainty leads to more accurate results.

Remote Sensing

Coastal armoring and sea turtles: Beachfront homeowners’ opinions and intent

Florida’s dynamic beach-dune ecosystem and the structures built along the shore face threats from coastal (or shoreline) erosion, sea level rise, and inadequate regulatory protection efforts. In light of these threats, private property owners are choosing to install coastal armoring on their property to protect upland structures which can negatively impact sea turtles and their nesting habitat. Coastal armoring can significantly degrade the beach-dune ecosystem which serves as a vital economic and recreational resource and as crucial habitat for threatened or endangered sea turtle species, nesting shorebirds, and other endemic species. This study explored both Florida coastal property owner’s opinions of coastal armoring, and its impact on sea turtles and their nesting habitat. A quantitative survey was administered to beachfront single-family property owners that live within a mile of a protected section of beach (e.g, state park, preserve, wildlife refuge). In total, 373 of 1,274 distributed surveys were returned and analyzed. The presence of a neighbor with coastal armoring was the most influential factor on a property owner intending to, or already having installed coastal armoring. Additionally, higher assessed property values and lower levels of education were also associated with intent to armor, or current presence of coastal armoring on a parcel.

Florida

Informing sea turtle outreach efforts to maximize effectiveness

Most sea turtle (Cheloniidae) species worldwide are endangered or threatened, with threats causing harm to sea turtles predominantly human‐induced. Thus, prevention of further declines to these imperiled species will require alteration of human behaviors. Regulations, incentives, and environmental education are 3 strategies that could be used to alter human behavior. Our goal was to determine how to maximize effectiveness of one of these strategies—education efforts. We investigated knowledge deficiencies and light pollution behaviors of individuals living in a region with nesting sea turtles, in an effort to determine the best approach to promote sea turtle conservation. During 2014, we mailed a survey to 3,000 property owners in 4 coastal counties in Florida, USA, to achieve 3 objectives: assess what topic areas were misunderstood; discern who had knowledge deficiencies; and determine who had adopted turtle‐friendly lighting practices. The best predictors of knowledge included geographic factors (county, proximity of residences to the beach), demographic characteristics (age), and behaviors (individual's beach visitation rates). One practice that can reduce harm to sea turtles was common: use of window treatments to reduce light pollution. However, other practices harmful to sea turtles were prevalent, including long durations of use of outdoor lighting and use of light bulbs with wavelengths that can disturb sea turtles. Our results suggest that educational efforts could be enhanced by specifically focusing on increasing awareness of the effects of human actions on sea turtles, targeting individuals who visit the beach infrequently and live far from it to foster greater connection with these ecosystems, and publicizing a variety of options that could reduce harm to sea turtles so individuals feel a sense of freedom of choice.

Florida

Conservation easements and coastal armoring: Protecting sea turtle nesting habitat through property ownership

To determine the relationship between the intent of owners of homes located near sea turtle nesting beaches in the state of Florida to engage in coastal conservation easements (CCE), the theory of planned behavior (TPB), environmental identity (EI) and relevant demographics were analyzed. As CCEs are a novel application of a proven conservation tool, a statewide survey was administered to 1274 property owners living within a mile of a protected section of sea turtle nesting habitat (e.g. state park, preserve, wildlife refuge). Multiple linear regression showed coastal property owners were more likely to engage with a CCE if they believed they had the ability and opportunity, held positive attitudes about entering into a CCE, and identified more favorably with potential CCE motivators for property owners. These motivators include receiving assistance from a conservation organization to manage their beachfront land; conserving beach habitat; obtaining annual tax deductions; and trusting the organization administering a CCE. Knowing these motivators and demographics of coastal property owners can help aid coastal land conservationists in crafting strategies to conserve sea turtle nesting beaches.

Florida