Geology topics

Rachel M. Allen

Publications and source records attributed to Rachel M. Allen.

8 recordsLinked to original sources

USGS2026

Pre-restoration sediment budget of a tidally restricted estuary reveals potential for landward transport

Unnatural tidal restrictions are common features in estuaries, often arising from agricultural practices, road construction, or drainage activities. Restrictions tend to attenuate tides landward of the structure but can induce more complex effects in the seaward direction, including modification of natural geomorphic processes. The Herring River Estuary is the site of the largest salt marsh restoration effort in the northeast United States. We deployed a suite of instruments over one year to identify the role of tidal and atmospheric processes on sediment dynamics. We find 6.2·10 6 kg yr -1 of sediment is exported from the system through its only channel; this seaward-directed flux indicates that the seaward Wellfleet Harbor is not a sediment source for the Herring River Estuary. The sediment floodebb differential is landward above the tidal restriction, producing a divergent, transgressive embayment. The mudflats are the primary source of this sediment, eroding at rates of 0.1 and 5.3 cm yr -1 at the shallow and deep stations, respectively. Sediment is resuspended on the mudflats during wind events and exported from the system when landward-directed winds produced a seaward return flow. Ebb-dominated tides also yield net sediment export during calm periods. Once the tidal restriction is removed, the areas landward of the restriction may become a large sediment sink. It is possible that sediment from the embayment between the mouth and the restriction begins to move landward rather than seaward, but it is unlikely that Wellfleet Harbor would supply additional sediment. Therefore, as the subsided salt marshes landward of the tidal restriction begin to accrete sediment, it would most likely come at the expense of the seaward channel bottoms, mudflats, and salt marsh shorelines described in this study. In partitioning the sediment budget to geomorphic processes, this work presents a significant advance in the understanding of the linkage between a tidally restricted estuary and its seaward embayment. As tidal restriction removal becomes a more common restoration practice, the understanding of pre-removal baseline conditions becomes important for developing conceptual models of post-removal geomorphic evolution.

Massachusetts↗

USGS2026

Biophysical controls on sediment erodibility in shallow estuarine embayments

The erodibility of cohesive sediment is known to vary both spatially and temporally but the factors governing its variation are not well understood. We conducted a field investigation of the influence of hydrodynamic forcing, sediment properties, and benthic infauna on erodibility in the muddy shallows of San Pablo and Grizzly Bays in northern San Francisco Bay in summer 2019 and winter 2020. An erosion rate parameter M c was determined from regressions between near-bed vertical turbulent sediment flux, as a proxy for erosion, and bed shear stress due to currents. During each 2-month study period, we measured benthic infauna abundance and dry bulk density, particle size distribution, percent organic carbon, chlorophyll a , pheophytin a , and carbohydrates carbon concentrations of surficial bed sediments five or six times. M c increased with bed shear stress due to waves in both embayments. In San Pablo Bay, erodibility was approximately 50% lower during the winter than the summer deployment, whereas in Grizzly Bay, there was no significant difference. The factor most strongly related to the decrease in M c in San Pablo Bay was increased abundance of the amphipod Ampelisca abdita . The observed reduction in erodibility may occur in many muddy estuaries because A. abdita is broadly distributed in the coastal waters of North America. Erodibility was also directly related to biomass of the invasive clam Potamocorbula amurensis . Erodibility did not depend on dry bulk density: bulk density did not vary seasonally in San Pablo Bay and was lower in winter than summer in Grizzly Bay.

California↗

USGS2024

Sensitivity analysis of a dynamic vegetation-sediment transport model using equadratures: Exploring inorganic accretion on a marsh platform

Salt marsh systems require a net import of inorganic sediment to maintain their structure in response to sea‐level rise. Marshes are affected by physical processes including tides, waves, sediment transport, and the influence of vegetation, and these processes interact in complex ways leading to sediment accretion or erosion. We implement a 3‐D hydrodynamic sediment transport model in an idealized marsh‐bay complex with a gently sloping edge, and use it as a laboratory to explore the processes leading to bed elevation change through the bay‐marsh continuum. We use the novel equadratures method for efficient sensitivity analysis to test the roles of wave, vegetation, and sediment parameters on wave dissipation, bed shear stress, sediment fluxes, and deposition and erosion across a transect spanning bay shallows to the marsh. Within the explored bounds of parameter uncertainty, significant wave height ( H sig ), settling velocity ( w s ), and critical shear stress (τ crit ) most strongly affect accretion on the marsh platform. Deposition is affected more by parameter‐parameter interactions, that is, both τ crit and w s or both H sig and w s , than by a single parameter varying alone. The sediment that accretes on the marsh platform originates beyond the marsh edge, indicating that the dynamics of the adjacent mudflat are important for predicting the fate of the marsh. Applying efficient sensitivity analysis techniques can empower process‐based models to test more parameters, larger ranges, and longer timeframes, enabling future predictions of marsh response to sea‐level rise based on physical processes

California↗

USGS2024

Observations of flocs in an estuary and implications for computation of settling velocity

The settling velocity ( w s ) in estuarine environments can impact whether a region is eroding or accreting sediment on the bed, yet determining this rate can be an indirect process requiring a number of assumptions. Accurate determination of w s is especially needed for numerical models to reproduce observed sediment concentrations at the appropriate timescale. We collected information on suspended sediment flocculation at a channel site (13 m deep) and a shallows site (4 m deep) within South San Francisco Estuary, alongside timeseries of flow, wave statistics, turbulent shear, and bottle samples analyzed for both w s and particle size. Using the measurements of floc size and settling velocity, we performed a sensitivity analysis on the unknown parameters in the general explicit formula for settling velocity. The collected particle size distribution data show that multiple classes of flocs are present; these are characterized as flocculi, microflocs, and macroflocs. We show that w s of flocculi is closest to w s for the full distribution. The determined parameter values lead to near-bed mass-weighted settling velocities (standard deviation) of 1.18 (0.55) and 0.22 (0.15) mm/s at the channel and shallows sites, respectively. Modeling efforts can use this work to help select an appropriate sediment model and parameter values.

California↗

USGS2021

Cohesive sediment modeling in a shallow estuary: Model and environmental implications of sediment parameter variation

Numerical models of sediment transport in estuarine systems rely on parameter values that are often poorly constrained and can vary on timescales relevant to model processes. The selection of parameter values can affect the accuracy of model predictions, while environmental variation of these parameters can impact the temporal and spatial ranges of sediment fluxes, erosion, and deposition in the real world. We implemented a numerical model of San Pablo Bay, an embayment within San Francisco Bay, California, for November–December 2014, and compared model outputs to observations of water level, velocity, wave parameters, salinity, and suspended sediment concentration (SSC) in the shallow regions. Idealized model runs show that wind timing relative to the phase of the tides is the strongest control on sediment fluxes and bed erosion. We varied sediment erodibility in the outflow of the Petaluma River; while this causes erosion and deposition to vary strongly through the shallows system, total export from the shallows does not change. Model runs with realistic winds show that wind likely resuspends faster settling particles or allows for more particle flocculation; particle settling velocity controls system-wide sediment accumulation. At the margins of the system, the magnitude of SSC is closely tied to wind direction when winds occur during flood tide, but sediment deposition is less connected: Both bed evolution and SSC need to be considered in the prediction of marsh fate. Spatial patterns of light attenuation due to SSC is strongly tied to assumed settling velocity.

California↗

USGS2021

Influence of invasive submerged aquatic vegetation (E. densa) on currents and sediment transport in a freshwater tidal system

We present a field study combining measurements of vegetation density, vegetative drag, and reduction of suspended-sediment concentration (SSC) within patches of the invasive submerged aquatic plant Egeria densa . Our study was motivated by concern that sediment trapping by E. densa , which has proliferated in the Sacramento–San Joaquin Delta, is impacting marsh accretion and reducing turbidity. In the freshwater tidal Delta, E. densa occupies shallow regions, frequently along channel margins. We investigated two sites: Lindsey Slough, a muddy low-energy backwater, and the lower Mokelumne River, with stronger currents and sandy bed sediments. At the two sites biomass density, frontal area, and areal density of the submerged aquatic vegetation (SAV) were similar. Current attenuation within E. densa exceeded 90% and the vegetative drag coefficient followed , where is stem Reynolds number. The SAV reduced SSC by an average of 18% in Lindsey Slough. At Mokelumne River the reduction ranged 0–40%, with greatest trapping when discharge and SSC were elevated. This depletion of SSC decreases the transport of sediment to marshes by the same percentage, as the rising tide must pass through fringing SAV before reaching marshes. Sediment trapping in E. densa in the Delta is limited by low flux through the canopy and low settling velocity of suspended sediment (mostly flocculated mud). Sediment trapping by SAV has the potential to reduce channel SSC, but the magnitude and sign of the effect can vary with local factors including vegetative coverage and the depositional or erosional nature of the setting.

California↗

USGS2019

Seasonal, spring-neap, and tidal variation in cohesive sediment transport parameters in estuarine shallows

Numerical models for predicting sediment concentrations and transport rely on parameters such as settling velocity and bed erodibility that describe sediment characteristics, yet these parameters are rarely probed directly. We investigated temporal and spatial variation in sediment parameters in the shallows of San Pablo Bay, CA. Flow, turbulence, and suspended sediment data were measured at sites located at 1 and 2 m below mean lower low water (MLLW) from November 2013 through April 2015, supplemented by monthlong periods in 2011, 2012, and 2016. Maximum current velocities were 0.40–0.47 m s -1 at these depths; the strongest currents decreased to 0.27–0.34 m s -1 during neap periods. Winters 2013–2014 and 2014–2015 experienced strong drought conditions, limiting the potential for seasonal impact on sediment conditions during this experiment. Despite this, the more storm‐influenced site showed clear changes during the winter: the roughness parameter decreased from 10 −4 to 10 −5 m, from hydrodynamically rough to smooth conditions, and bed erodibility increased by an order of magnitude. Median settling velocity was 2.05·10 −4 m s -1 ; it varied twofold within a tidal cycle, decreasing as current velocity grew during flood and ebb. This tidal control on floc size affected settling velocity on the spring‐neap timescale, possibly driving a spring‐neap oscillation in erodibility. Our findings highlight variation in sediment dynamics that is commonly ignored in numerical models and the need for field observations to ground truth ongoing modeling efforts.

California↗

USGS2019

Measuring settling velocity in a strongly tidal estuary

Predicting sediment transport in estuarine systems requires understanding sediment settling velocity, its range of fluctuations, and the shortcomings of the tools to measure it. Previous studies have used Laser In-Situ Scattering and Transmissometry (LISST) instruments to measure particle size and Acoustic Doppler Velocimeters (ADV) to return estimates of settling velocity. We deployed both instruments over a 4-week period in summer 2016 in San Pablo Bay, CA, and observed conflicting results from the two instruments. The LISST indicated the settling velocity decreased with increasing bed shear stress, while the ADV showed that settling velocity increased. Comparing the experimental conditions from this study with previous research reveals that the ADV method requires steady state conditions that were not achieved. Although the ADV method uses easily measured quantities to return the settling velocity, it relies on assumptions that are not always valid in estuarine settings.

California↗