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Geology topics

Mickey Agha

Publications and source records attributed to Mickey Agha.

At least 19 recordsLinked to original sources
USGS2021

Birds not in flight: Using camera traps to observe ground use of birds at a wind-energy facility

Context: Camera trapping is increasingly used to collect information on wildlife occurrence and behaviour remotely. Not only does the technique provide insights into habitat use by species of interest, it also gathers information on non-target species. Aims: We implemented ground-based camera trapping to investigate the behaviours of ground-dwelling birds, a technique that has largely been unutilised for studying birds, especially in wind-energy facilities. Methods: We used camera traps to monitor activities of Agassiz’s desert tortoises ( Gopherus agassizii ) at their self-constructed burrows in a wind-energy facility near Palm Springs, California, USA. While doing so, we collected data on numerous burrow commensals, including birds. Key results: Monitoring from late spring to mid-autumn in one year showed regular use of tortoise burrows and the immediate area by 12 species of birds, especially passerines. The most abundant species, as indicated by the number of photographs, but not necessarily individuals, was the rock wren ( Salpinctes obsoletus ), with a total of 1499 events. Birds appeared to use the interior or proximate vicinity of burrows for gathering nesting material, displaying, feeding, dust bathing and other activities. Of the bird species observed, 10 are known to be occasional casualties of turbine-blade strikes. The minimum known-age of a burrow had a positive relationship with bird counts. Conclusions: Using camera traps focused at ground level can be a useful tool in avian conservation efforts because it is an effective technique for measuring bird presence, activity and behaviour in altered habitats such as wind farms, especially for those species that are low flyers or ground dwellers. Implications: Acquiring data over the long term by using ground-based monitoring with camera traps could add to our understanding of avian behaviour and habitat use in relation to wind-energy infrastructure and operations, and help determine the vulnerability of avifauna that utilise the area.

California↗
USGS2021

A watershed moment: Analysis of sub-basins refocuses the geography of turtle conservation across the globe

Conservation planners use a variety of decision-making tools, many of which require identifying and prioritizing spatial units based on their biodiversity and levels of imperilment. Turtles are highly imperiled, but present schemes for determining global priority areas are focused mostly on broad regional scales. We conduct the first global evaluation of turtle biodiversity and imperilment at a sub-basin level to identify geographically smaller areas of high conservation value, and compare with these existing prioritizations. We employed two spatial analyses—bivariate maps and local indicator of spatial association (LISA)—to identify and prioritize sub-basin clusters based on multiple biodiversity and conservation metrics in addition to species richness. Most high-priority sub-basin clusters were located along tropical and subtropical coastlines. A new area of global significance for turtle conservation was identified in southwest India. Many sub-basins of the Indomalayan Realm were clustered as high or intermediate priority, with large clusters of high-priority sub-basins also in tropical Australasia. Other high and intermediate priority sub-basin clusters were found in the Afrotropical, Neotropical, and Nearctic realms, often in previously recognized turtle biodiversity hotspots. Many conservation-priority sub-basins with high turtle-species richness and endemism are in lowland and coastal areas where endemics (some from ancient lineages) are imperiled in association with a high human footprint. Our findings reiterate the global significance of Asia as a key area of chelonian conservation need, while identifying focal areas across the globe where the need for targeted turtle conservation is especially great.

Biological Conservation↗
USGS2021

‘Unscrambling’ the drivers of egg production in Agassiz’s desert tortoise: Climate and individual attributes predict reproductive output

ABSTRACT: The ‘bet hedging’ life history strategy of long-lived iteroparous species reduces short-term reproductive output to minimize the risk of reproductive failure over a lifetime. For desert-dwelling ectotherms living in variable and unpredictable environments, reproductive output is further influenced by precipitation and temperature via effects on food availability and limits on activity. We assembled multiple (n = 12) data sets on egg production for the threatened Agassiz’s desert tortoise Gopherus agassizii across its range and used these data to build a range-wide predictive model of annual reproductive output as a function of annual weather variation and individual-level attributes (body size and prior-year reproductive status). Climate variables were more robust predictors of reproductive output than individual-level attributes, with overall reproductive output positively related to prior-year precipitation and an earlier start to the spring activity season, and negatively related to spring temperature extremes (monthly temperature range in March-April). Reproductive output was highest for individuals with larger body sizes that reproduced in the previous year. Expected annual reproductive output from 1990-2018 varied from 2-5 to 6-12 eggs female -1 yr -1 , with a weak decline in expected reproductive output over this time (p = 0.02). Climate-driven environmental variation in expected reproductive output was highly correlated across all 5 Recovery Units for this species (Pearson’s r > 0.9). Overall, our model suggests that climate change could strongly impact the reproductive output of Agassiz’s desert tortoise, and could have a negative population-level effect if precipitation is significantly reduced across the species’ range as predicted under some climate models.

California, Arizona, Nevada, Utah↗
USGS2020

Refining genetic boundaries for Agassiz’s desert tortoise (Gopherus agassizii) in the western Sonoran Desert: The influence of the Coachella Valley on gene flow among populations in southern California

Understanding the influence of geographic features on the evolutionary history and population structure of a species can assist wildlife managers in delimiting genetic units (GUs) for conservation and management. Landscape features including mountains, low elevation depressions, and even roads can influence connectivity and gene flow among Agassiz’s desert tortoise (Gopherus agassizii) populations. Substantial changes in the landscape of the American Southwest occurred during the last six million years (including the formation of the Gulf of California and the lower Colorado River), which shaped the distribution and genetic structuring of tortoise populations. The area northwest of the Gulf of California is occupied by the Salton Trough, including the Coachella Valley at its northern end. Much of this area is below sea level and unsuitable as tortoise habitat, thus forming a potential barrier for gene flow. We assessed genetic relationships among three tortoise populations separated by the Coachella Valley. Two adjacent populations were on the east side of the valley in the foothills of the Cottonwood and Orocopia mountains separated by Interstate 10. The third population, Mesa, was located about 87 km away in the foothills of the San Bernardino Mountains at the far northwestern tip of the valley. The Cottonwood and Orocopia localities showed genetic affiliation with the adjacent Colorado Desert GU immediately to the east, and the Mesa population exhibited affiliation with both the Southern Mojave and Colorado Desert GUs, despite having a greater geographic distance (0.5x–1.5x greater) to the Colorado Desert GU. The genetic affiliation with the Colorado Desert GU suggests that the boundary for that GU needs to be substantially extended to the west to include the desert tortoise populations around the Coachella Valley. Their inclusion in the Colorado Desert GU may benefit these often overlooked populations when recovery actions are considered.

California↗
USGS2020

Brackish tidal marsh management and the ecology of a declining freshwater turtle

Water management practices in tidal marshes of the San Francisco Bay Estuary, California are often aimed at increasing suitable habitat for threatened fish species and sport fishes. However, little is known about how best to manage habitat for other sensitive status species like the semiaquatic freshwater Western Pond Turtle (Actinemys marmorata) that is declining throughout much of its range. Here, we examined the basking activity, abundance, survival, and growth of Western Pond Turtles at two brackish water study sites in Suisun Marsh, California that differed in how they were managed, with one having passive management (i.e., no active water regulation) and another having active management (i.e., water regulated for seasonal hunting). Our results revealed that basking activity was greatest when salinity, water stage, and air temperatures were low, shortwave radiation was high, and wind levels were intermediate. These preferred habitat characteristics often reflected conditions that were naturally maintained at the passively managed, muted tidal site. We also found that turtles were more abundant and had higher survival rates in the passively managed habitat compared to the actively managed habitat (201-323 turtles/km 2 and 96% survival versus 11-135 turtles/km 2 and 77% survival, respectively). Finally, characteristic growth constants from von Bertalanffy models showed that turtles grew more quickly in passively managed habitat compared to the actively managed habitat. Our results suggest that management strategies for this sensitive status species may be more effective if they protect passively managed muted tidal systems that limit or delay extreme cycles of salinity and water levels and conserve elevated terrestrial buffer zones adjacent to muted and full tidal systems.

California↗
USGS2020

Wind, sun, and wildlife: Do wind and solar energy development “short-circuit” conservation in the western United States?

Despite the trade-offs between renewable energy development, land use, humans, and wildlife, wind and solar development continues to transform the southwestern US into a green energy landscape. While renewable energy reduces carbon emissions and reliance on fossil fuels, many studies have emerged on the associated ecological and social impacts of this technology. Here, we review the current state of knowledge on the nexus between wildlife conservation and energy development in the western US since 2010. We revisit pertinent ecological concepts and questions presented in earlier reviews to assess how far the field has progressed in mitigating negative effects. Specifically, we ask, what density or design of development maximizes energy benefits while minimizing negative effects on wildlife, whether the results of previously-deficient before-after control-impact studies are now more readily-available, and ultimately, can the impacts of renewable energy development on wildlife be mitigated? We also provide a case study on the federally-protected Desert Tortoise, a conservation-reliant species in the Desert Southwest US, to highlight efforts to mitigate the negative effects of renewable energy development. Our review concludes that successful mitigation is possible via use of spatial decision support tools, applying novel wildlife deterrence and detection systems developed for existing installed facilities, and incorporating impact studies that provide managers with conservation metrics for evaluating different future development land-use scenarios.

Environmental Research Letters↗
USGS2020

Turtle biogeography: Global regionalization and conservation priorities

Defaunation in the Anthropocene has created a need to focus limited conservation resources on geographically-explicit areas with high conservation significance. Priority conservation areas are often defined as those with high biodiversity – hotspots. While these conservation areas are critical to securing global biodiversity, prevailing approaches for their delineation are often qualitative. Here, we demonstrate the benefits of a clade-specific approach that improves conservation. We use the distinct, imperiled clade of turtles (tortoises and freshwater turtles) to delineate biogeographical regions and characterize their comparative levels of biodiversity and conservation values. We produce a quantitative, revisable map of 63 global turtle regions and identify several turtle regions, mostly in the Indomalayan turtle realm, that are high-priority conservation regions. While our high-priority turtle regions include those previously reported in the literature as turtle hotspots, we also describe a new priority conservation region in Southeast Asia (Yangtze-Huang He-Xi Yiang) which has both high species and endemism richness. Although not considered a high or intermediate conservation priority, our analyses delineated another previously unidentified turtle hotspot – the Kalahari Basin-Rift Valley. Additionally, we identify several turtle regions, largely in Central America, with intermediate conservation priority. Our results reveal that many turtle hotspots represent complex biogeographical areas with high inter-regional β -diversity, and several of these turtle-hotspots occur in transition zones with high biogeographical complexity. In these cases, inter-regional conservation efforts will be necessary to ensure turtle biodiversity conservation.

Biological Conservation↗
USGS2018

Where have all the turtles gone, and why does it matter?

Of the 356 species of turtles worldwide, approximately 61% are threatened or already extinct. Turtles are among the most threatened of the major groups of vertebrates, in general, more so than birds, mammals, fishes or even the much besieged amphibians. Reasons for the dire situation of turtles worldwide include the familiar list of impacts to other species including habitat destruction, unsustainable overexploitation for pets and food, and climate change (many turtles have environmental sex determination). Two notable characteristics of pre-Anthropocene turtles were their massive population sizes and correspondingly high biomasses, the latter among the highest values (over 855 kilograms per hectare) ever reported for animals. As a result of their numerical dominance, turtles have played important roles as significant bioturbators of soils, infaunal miners of sea floors, dispersers and germination enhancers of seeds, nutrient cyclers, and consumers. The collapse of turtle populations on a global scale has greatly diminished their ecological roles.

BioScience↗
USGS2018

Macroecological patterns of sexual size dimorphism in turtles of the world

Sexual size dimorphism (SSD) is a well-documented phenomenon in both plants and animals; however, the ecological and evolutionary mechanisms that drive and maintain SSD patterns across geographic space at regional and global scales are understudied, especially for reptiles. Our goal was to examine geographic variation of turtle SSD and to explore ecological and environmental correlates using phylogenetic comparative methods. We use published body size data on 135 species from nine turtle families to examine how geographic patterns and the evolution of SSD are influenced by habitat specialization, climate (annual mean temperature and annual precipitation) and climate variability, latitude, or a combination of these predictor variables. We found that geographic variation, magnitude and direction of turtle SSD are best explained by habitat association, annual temperature variance and annual precipitation. Use of semi-aquatic and terrestrial habitats was associated with male-biased SSD, whereas use of aquatic habitat was associated with female-biased SSD. Our results also suggest that greater temperature variability is associated with female-biased SSD. In contrast, wetter climates are associated with male-biased SSD compared with arid climates that are associated with female-biased SSD. We also show support for a global latitudinal trend in SSD, with females being larger than males towards the poles, especially in the families Emydidae and Geoemydidae. Estimates of phylogenetic signal for both SSD and habitat type indicate that closely related species occupy similar habitats and exhibit similar direction and magnitude of SSD. These global patterns of SSD may arise from sex-specific reproductive behaviour, fecundity and sex-specific responses to environmental factors that differ among habitats and vary systematically across latitude. Thus, this study adds to our current understanding that while SSD can vary dramatically across and within turtle species under phylogenetic constraints, it may be driven, maintained and exaggerated by habitat type, climate and geographic location.

Journal of Evolutionary Biology↗
USGS2018

Agassiz’s desert tortoise (Gopherus agassizii) activity areas are little changed after wind turbine-induced fires in California

Wind turbine-induced fires at a wind energy facility in California, USA, provided an opportunity to study the before and after effects of fire on a population of protected Agassiz’s desert tortoises ( Gopherus agassizii ) in the Sonoran Desert, a species and ecosystem poorly adapted to fire. We compared annual activity areas (AAs) of tortoises in 2011 and 2013, before and after two 2012 fires, with those of tortoises in adjacent areas unaffected by the same fires. Tortoises in both AAs affected by fire or unaffected by fire occupied the same general AAs in 2013, after the fires, as they did in 2011, before the fires. Some tortoises had both their 2011 and 2013 AAs completely or almost completely within the areas burned by the 2012 fires, despite the proximity of unburned habitat. None of the tortoises with 2011 AAs subsequently unaffected by the 2012 fires shifted their AAs into burned habitat in 2013. For the fire-affected group of tortoises, the mean percentages of 2011 and 2013 AAs burned by the 2012 fires were not significantly different, showing fidelity to the burned areas. Tortoises in both groups generally occupied consistent AAs, even post fire, placing them at potential risk of exposure to unfavourable burned habitat.

California↗
USGS2018

Reproductive output and clutch phenology of female Agassiz's desert tortoises (Gopherus agassizii) in the Sonoran Desert region of Joshua Tree National Park

Agassiz's desert tortoise ( Gopherus agassizii ) reaches the southern edge of its range in the Sonoran Desert of California. The reproductive ecology of this wideranging species is understudied here compared to populations in the adjacent Mojave Desert. Understanding potential geographic variation in reproductive ecology is important for effective management of conservation-reliant species like G. agassizii . We studied the fecundity and clutch phenology of female G. agassizii at two study sites in the Sonoran Desert region of Joshua Tree National Park over five years (1997–1999, 2015–2016) spanning two of the strongest El Niño events on record and an epic drought. Across all years, mean clutch size was 4.3±1.5 eggs, mean clutch frequency was 1.78 clutches/female/year, and mean X-ray egg width was 36.51±1.56 mm, all of which are comparable to other published studies both in the Sonoran and Mojave deserts of California. Our results generally support earlier published findings that G. agassizii utilize a bet-hedging strategy of consistently producing small clutches almost every year, even during times of low annual primary productivity. A regionally warmer climate in the Sonoran Desert of California appears to have an effect on the timing of egg production, as the earliest dates of egg visibility in our study (April 6) were approximately two weeks earlier than the earliest dates reported for G. agassizii in the Mojave Desert. Shelled eggs were no longer visible in tortoises after mid-June in all years but the El Niño year 1998, when eggs were visible until mid-July.

California↗
USGS2017

Mammalian mesocarnivore visitation at tortoise burrows in a wind farm

There is little information on predator–prey interactions in wind energy landscapes in North America, especially among terrestrial vertebrates. Here, we evaluated how proximity to roads and wind turbines affect mesocarnivore visitation with desert tortoises ( Gopherus agassizii ) and their burrows in a wind energy landscape. In 2013, we placed motion-sensor cameras facing the entrances of 46 active desert tortoise burrows in a 5.2-km 2 wind energy facility near Palm Springs, California, USA. Cameras recorded images of 35 species of reptiles, mammals, and birds. Counts for 4 species of mesocarnivores at desert tortoise burrows increased closer to dirt roads, and decreased closer to wind turbines. Our results suggest that anthropogenic infrastructure associated with wind energy facilities could influence the general behavior of mammalian predators and their prey. Further investigation of proximate mechanisms that underlie road and wind turbine effects (i.e., ground vibrations, sound emission, and traffic volume) and on wind energy facility spatial designs (i.e., road and wind turbine configuration) could prove useful for better understanding wildlife responses to wind energy development. © 2017 The Wildlife Society.

California↗
USGS2017

The evolution of different maternal investment strategies in two closely related desert vertebrates

We compared egg size phenotypes and tested several predictions from the optimal egg size (OES) and bet-hedging theories in two North American desert-dwelling sister tortoise taxa, Gopherus agassizii and G. morafkai , that inhabit different climate spaces: relatively unpredictable and more predictable climate spaces, respectively. Observed patterns in both species differed from the predictions of OES in several ways. Mean egg size increased with maternal body size in both species. Mean egg size was inversely related to clutch order in G. agassizii , a strategy more consistent with the within-generation hypothesis arising out of bet-hedging theory or a constraint in egg investment due to resource availability, and contrary to theories of density dependence, which posit that increasing hatchling competition from later season clutches should drive selection for larger eggs. We provide empirical evidence that one species, G. agassizii , employs a bet-hedging strategy that is a combination of two different bet-hedging hypotheses. Additionally, we found some evidence for G. morafkai employing a conservative bet-hedging strategy. (e.g., lack of intra- and interclutch variation in egg size relative to body size). Our novel adaptive hypothesis suggests the possibility that natural selection favors smaller offspring in late-season clutches because they experience a more benign environment or less energetically challenging environmental conditions (i.e., winter) than early clutch progeny, that emerge under harsher and more energetically challenging environmental conditions (i.e., summer). We also discuss alternative hypotheses of sexually antagonistic selection, which arise from the trade-offs of son versus daughter production that might have different optima depending on clutch order and variation in temperature-dependent sex determination (TSD) among clutches. Resolution of these hypotheses will require long-term data on fitness of sons versus daughters as a function of incubation environment, data as yet unavailable for any species with TSD.

Arizona, California↗
USGS2017

Variation in annual clutch phenology of desert tortoises (Gopherus morafkai) in the Sonoran Desert of Arizona

The phenology of egg production and oviposition in organisms affects survival and development of neonates and thus, both offspring and maternal fitness. In addition, in organisms with environmental sex determination, clutch phenology can affect hatchling sex ratios with attendant effects on population demography. The rapid rate of contemporary climate change might disrupt reproductive phenologies that evolved to match environmental conditions. To better understand the response of clutch phenology to annual and long-term changes in climate, we studied a population of Sonoran Desert Tortoises ( Gopherus morafkai ) in Arizona in 1993 and 1997–2005, specifically quantifying three phenophases, including (1) the estimated time of appearance of shelled eggs in females, (2) the estimated time that eggs were last visible in X-radiographs, and (3) the duration of the interval between the first two events. The mean date for appearance of shelled eggs was 6 June, and the mean date they were last visible was 26 June. After controlling for individual female effects, these dates were different among years. The total number of days that eggs were visible across all females within a year differed among years, but the mean duration of time that clutches were visible, after controlling for individual female effects, was similar among years. Three of 18 females exhibited interannual egg retention on 5 occasions from 52 clutches. Although G. morafkai ovulates only one clutch per year, they might oviposit up to two because of interannual egg retention. Most females produced shelled eggs through heat-unit accumulation achieving 8.3 degree days within a 14-d moving average. The ability to vary the timing of egg formation and oviposition might buffer G. morafkai from some of the effects of predicted increases in temperatures, but species-specific information on developmental temperatures and nesting behavior are needed to determine whether or not the species will be able to produce viable clutches of mixed sex ratios in a warmer climate.

Arizona↗
USGS2017

Hierarchical, quantitative biogeographic provinces for all North American turtles and their contribution to the biogeography of turtles and the continent

Our study represents the first attempt to describe biogeographic provinces for North American (México, United States, and Canada) turtles. We analyzed three nested data sets separately: (1) all turtles, (2) freshwater turtles, and (3) aquatic turtles. We georeferenced North American turtle distributions, then we created presence–absence matrices for each of the three data sets. We used watershed unit as biogeographic units. We conducted an unweighted pair-group method with arithmetic mean clustering analysis on each Jaccard index distance matrix from our watershed species matrices to delineate biogeographic provinces. Provinces were then tested for significant differences in species compositions in a global model with the use of a one-way analysis of similarity. We conducted a best subset of environmental variables with maximum (rank) correlation with community dissimilarities that determined the best model of abiotic variables explaining province delineation (i.e., climate, topography, and stream channel). To identify which species contributed the most to province delineations, we conducted an indicator species analysis and a similarity-percentage analysis. There were 16 all-turtle provinces, 15 freshwater provinces, and 13 aquatic provinces. Species compositions delineating the provinces were explained by abiotic variables, including mean annual precipitation, mean precipitation seasonality, and diversity of streams. Province delineations correspond closely with geographical boundaries, many of which have Pleistocene origins. For example, rivers with a history of carrying glacial runoff (e.g., Arkansas, Mississippi) sometimes dissect upland provinces, especially for aquatic and semiaquatic turtles. Compared with freshwater fishes, turtles show greater sensitivity to decreased temperature with restriction of most taxa south of the last permafrost maximum. Turtles also exhibit higher sensitivity to climatic, geomorphic, and tectonic instability, with richness and endemism concentrated along the more stable Gulf of México and Atlantic (south of the last permafrost maximum) coasts. Although distribution data indicate two aquatic turtles are most cold tolerant (i.e., Chrysemys picta , Chelydra serpentina ), aquatic turtles overall show the most restriction to warmer, wetter climates. Sequential addition of semiaquatic and terrestrial turtles into analyses shows, as expected, that these taxa flesh out turtle faunas in climatically harsh (e.g., grasslands) or remote (e.g., California, Sonoran Desert) regions. The turtle assemblages of southwestern versus southeastern North America are distinct. But there is a transition zone across the semiarid plains of the Texas Gulf Coast, High Plains, and Chihuahuan Desert, including a strong boundary congruent with the Cochise Filter-Barrier. This is not a simple subdivision of Neotropical versus Nearctic taxa, as some lineages from both realms span the transition zone.

Herpetological Monographs↗
USGS2017

A report on genetic affinities and relatedness of Agassiz’s desert tortoises (Gopherus agassizii) at opposite ends of the Coachella Valley in California

This report summarizes the results for mtDNA and STR genotyping of 41 desert tortoise (Gopherus agassizii) DNA samples from opposite sides of the Coachella Valley: one sample from the west side at the Mesa wind energy facility in the Whitewater Hills and the other from the mouth of Cottonwood Canyon in Joshua Tree National Park, both within the boundaries of the Coachella Valley Multiple Species Habitat Conservation Plan. Additional samples were collected from tortoises on the northern bajadas of the Orocopia Mountains and from the Santa Rosa Mountains and those results will be presented at a later time in a scientific publication. We tested samples for their mtDNA haplotype and 25 STR loci previously used in other studies. We performed assignment testing to determine the genetic affinity of each individual to the geographic region of collection. Despite apparent isolation, both populations appear to be naturally occurring and do exhibit indications of having experienced increased genetic drift (resulting in increased homozygosity, increased inbreeding or a reduction of genetic diversity). The lack of strong evidence for genetic isolation suggests that long-term maintenance of unfragmented landscapes is an important part of tortoise conservation in the region.

California↗