Geology topics

Micheal S Allen

Publications and source records attributed to Micheal S Allen.

3 recordsLinked to original sources

USGS2026

Vessel avoidance behavior in green turtles off the west coast of Florida

Vessel strikes are an increasing source of mortality for sea turtles in coastal waters with high recreational vessel traffic. We quantified flight initiation distance (FID) and avoidance behavior of green turtles Chelonia mydas in response to an approaching vessel traveling at different speeds in shallow coastal waters of Florida. Observational boat surveys were conducted at 3 vessel speeds, and observed FID was evaluated in relation to vessel speed, turtle size class (<60 cm vs. ≥60 cm estimated carapace length), and environmental conditions using a regression tree analysis. Observed FID was most strongly partitioned by vessel speed, with shorter mean distances consistently associated with higher speeds. Mean observed FID ranged from approximately 7.7 m at low vessel speed under specific environmental conditions to approximately 5 m or less at higher speeds. Turtle size class was not associated with differences in observed FID. Flight behavior was non-random, with turtles most frequently fleeing directly away from the vessel’s trajectory, and was independent of vessel speed and turtle size. Observed FID reflects the combined effects of turtle behavior and observer detection. Nevertheless, the consistent association between higher vessel speed and reduced observed FID supports management strategies that would reduce boat speeds and increase boater awareness to protect green turtles in shallow coastal habitats.

Florida↗

USGS2023

Quantifying uncertainty in coastal salinity regime for biological application using quantile regression

Salinity regimes in coastal ecosystems are highly dynamic and driven by complex geomorphic and hydrological processes. Estuarine biota are generally adapted to salinity fluctuation, but are vulnerable to salinity extremes. Characterizing coastal salinity regime for ecological studies therefore requires representing extremes of salinity ranges at time scales relevant to ecology (e.g., daily, monthly, and seasonally). Here, we propose a framework for modeling coastal salinity with these overall goals: (1) quantify uncertainty in salinity associated with important terrestrial and oceanographic drivers, (2) examine time scales of salinity response to river streamflow events, and (3) predict salinity continuously over space at key time scales. Salinity is modeled as quantile surfaces related to river discharge, tidal dynamics, wind, and spatial location, applied to Suwannee Sound estuary, FL, USA, where salinity has been monitored spatially since 1981. Each quantile level is regressed independently, and together they comprise a distribution of salinity uncertainty across space, with upper and lower quantiles describing salinity extremes. Effects of physical drivers on salinity are compared through four base models with various combinations of tide and wind variables, each including spatial coordinates and a single streamflow metric (in cubic meters per second). Multiple time scales of streamflow are considered by taking means across various periods, from 1 to 12 days, and at various lagged intervals prior to salinity sample, totaling 144 streamflow metrics. We found that the Suwannee coastal salinity regime is dynamic at multiple time scales and varies nonlinearly across space from the river effluence outward. Salinity increases nonlinearly with decreasing river flow rates below 200 m 3 /s, most prominently in the lower quantiles of salinity (τ = 0.05–0.25). Wind appears to have a stronger influence on salinity than astronomic tides for this estuary. The regression approach developed here can be applied to any coastal system that has sufficient spatial and temporal monitoring coverage to capture multiple flood and drought events. It is implemented with a simple R routine, and is less computationally-intensive than finite difference hydrodynamic modeling. The characterizations of salinity uncertainty developed in these analyses can be directly applied to future studies of fish and wildlife responses to changes in watershed management.

Florida↗

USGS2020

Use of strong habitat–abundance relationships in assessing population status of cryptic fishes: An example using the Harlequin Darter

Understanding trends in abundance is important to fisheries conservation, but techniques for estimating streamwide abundance of cryptic fishes with strong habitat–abundance relationships are not well established and need further development. We developed techniques for addressing this need using the Harlequin Darter Etheostoma histrio , a small, cryptic freshwater fish associated with submerged wood in streams. Our objectives were to (1) determine how Harlequin Darter abundance and the amount of submerged wood were related at sampled sites and (2) use this relationship to estimate Harlequin Darter abundance at unsampled sites and extrapolate Harlequin Darter abundance estimates and associated uncertainty streamwide. We conducted a mark–recapture study to estimate abundance of Harlequin Darters in 25‐m stream reaches at 24 sites in Big Escambia Creek (BEC) and 18 sites in Pine Barren Creek (PBC) (Escambia River tributaries in northwestern Florida). The number of wood pieces (submerged wood ≥1.5 m long and ≥0.25 m in circumference) in both creeks was counted and mapped using side‐scan sonar and a geographic information system. Harlequin Darter and wood data were used in a Bayesian multinomial mixture model to estimate site abundance of Harlequin Darters, to determine the relationship between wood and Harlequin Darter abundance, and to extrapolate Harlequin Darter abundance streamwide. We found a positive relationship between wood and Harlequin Darter abundance in both creeks, and there were more wood pieces in PBC than in BEC. Streamwide abundance of Harlequin Darters was greater in PBC than in BEC. The extrapolated streamwide abundance estimates were 9,369 Harlequin Darters (95% credible interval = 6,668–13,402) in PBC and 7,439 Harlequin Darters (95% credible interval = 4,493–11,226) in BEC. Our methods effectively estimated abundance of a small, cryptic fish that uses complex wood habitat. In addition, our findings may assist in the conservation of the Harlequin Darter.

Florida↗