Geology topics

Mark D. Uhen

Publications and source records attributed to Mark D. Uhen.

4 recordsLinked to original sources

USGS2024

Design, development, and implementation of IsoBank: A centralized repository for isotopic data

Stable isotope data have made pivotal contributions to nearly every discipline of the physical and natural sciences. As the generation and application of stable isotope data continues to grow exponentially, so does the need for a unifying data repository to improve accessibility and promote collaborative engagement. This paper provides an overview of the design, development, and implementation of IsoBank , a community-driven initiative to create an open-access repository for stable isotope data implemented online in 2021. A central goal of IsoBank is to provide a web-accessible database supporting interdisciplinary stable isotope research and educational opportunities. To achieve this goal, we convened a multi-disciplinary group of over 40 analytical experts, stable isotope researchers, database managers, and web developers to collaboratively design the database. This paper outlines the main features of IsoBank and provides a focused description of the core metadata structure. We present plans for future database and tool development and engagement across the scientific community. These efforts will help facilitate interdisciplinary collaboration among the many users of stable isotopic data while also offering useful data resources and standardization of metadata reporting across eco-geoinformatics landscapes.

PLoS ONE↗

USGS2017

Opinion: Why we need a centralized repository for isotopic data

Stable isotopes encode and integrate the origin of matter; thus, their analysis offers tremendous potential to address questions across diverse scientific disciplines ( 1 , 2 ). Indeed, the broad applicability of stable isotopes, coupled with advancements in high-throughput analysis, have created a scientific field that is growing exponentially, and generating data at a rate paralleling the explosive rise of DNA sequencing and genomics ( 3 ). Centralized data repositories, such as GenBank, have become increasingly important as a means for archiving information, and “Big Data” analytics of these resources are revolutionizing science and everyday life.

Proceedings of the National Academy of Sciences of↗

USGS2016

A new specimen of Agorophius pygmaeus (Agorophiidae, Odontoceti, Cetacea) from the Early Oligocene Ashley Formation of South Carolina, USA

The holotype partial skull of Agorophius pygmaeus (the monotypic form for both the genus Agorophius and the Family Agorophiidae) has been missing for approximately 140 years. Since the discovery of Agorophius pygmaeus , many additional taxa and specimens have been placed in the Family Agorophiidae, only to be reclassified and removed later. This has created confusion as to what is and what is not an agorophiid and a lack of clarity as to what characteristics delimit the Agorophiidae. A newly discovered skull of an agorophiid recently collected from an underwater cliff face of the Ashley River, South Carolina, USA, is assigned to Agorophius pygmaeus . It derives from the base of the Ashley Formation (early Oligocene). The new specimen consists of most of the skull and periotics, which are well preserved and described for the first time in an agorophiid. The new specimen provides an opportunity to diagnose the Agorophiidae and place the genus and species within the phylogenetic context of the early odontocete radiation in the Oligocene, along with other taxa such as the Ashleycetidae, Mirocetidae, Patriocetidae, Simocetidae, Waipatiidae, and Xenorophidae. Based on this new understanding, Agorophiidae are known with certainty only from the early Oligocene of South Carolina, with other undescribed, potential agorophiid specimens from the Oligocene of the North Pacific region (Japan, Mexico, and Washington State).

South Carolina↗

USGS2000

Endocranial volume of mid-late eocene archaeocetes (order: cetacea) revealed by computed tomography: Implications for cetacean brain evolution

The large brain of modern cetaceans has engendered much hypothesizing about both the intelligence of cetaceans (dolphins, whales, and porpoises) and the factors related to the evolution of such large brains. Despite much interest in cetacean brain evolution, until recently there have been few estimates of brain mass and/or brain–body weight ratios in fossil cetaceans. In the present study, computed tomography (CT) was used to visualize and estimate endocranial volume, as well as to calculate level of encephalization, for two fully aquatic mid-late Eocene archaeocete species, Dorudon atrox and Zygorhiza kochii. The specific objective was to address more accurately and more conclusively the question of whether relative brain size in fully aquatic archaeocetes was greater than that of their hypothesized sister taxon Mesonychia. The findings suggest that there was no increase in encephalization between Mesonychia and these archaeocete species.

Journal of Mammalian Evolution↗