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Geology topics

Laurence G. Miller

Publications and source records attributed to Laurence G. Miller.

28 records · Page 2Linked to original sources
USGS2007

Bacterial Cycling of Methyl Halides

This chapter focuses on the monohalogenated methanes methyl chloride (MeCl) and methyl bromide (MeBr), their natural and anthropogenic sources, and their degradation by microorganisms, specifically by aerobic bacteria that can use MeBr and MeCl as sole source of carbon and energy. The biogeochemical cycle of methyl halides and the microbiology, biochemistry, genetics, and biotechnological potential of methyl halide-degrading microorganisms are discussed in the chapter. Methyl halides are the dominant halocarbons in the atmosphere. They play an important role in regulating stratospheric ozone concentrations and global warming as well, two factors governing planetary habitability. The monohalomethanes—methyl chloride (MeCl), methyl bromide (MeBr), and methyl iodide (MeI)—are trace gases in the atmosphere with average tropospheric-mixing ratios of 600, 10, and 2 parts per trillion (ppt), respectively. However, methyl halides are radiatively active and hence contribute to global warming by absorbing radiation in the infrared region. This is evident in their elevated global warming potential (GWP), a value calculated to quantify each compound's warming effect (on a mass basis) relative to the same mass of CO 2 . Compounds with high GWP including those like methyl halides with low concentrations may have considerable impact on atmospheric warming when compared with other “greenhouse” gases with low GWP.

Advances in Applied Microbiology↗
USGS2003

Meromixis in hypersaline Mono Lake, California. 2. Nitrogen fluxes

Vertical fluxes of nitrogen were examined in hypersaline Mono Lake over a 9-yr period which encompassed the onset, persistence, and breakdown of meromixis. Under monomictic conditions, ammonia, which accumulates in the hypolimnion, is mixed into the euphotic region during autumn overturn. Following the onset of meromixis in 1983 and elimination of the winter period of holomixis, ammonia was depleted in the mixolimnion and accumulated beneath the chemocline. The mean rate of particulate nitrogen deposition, as measured by sediment traps over a 2-yr period during meromixis, was 2.0 mmol m −2 d −1 . Until meromixis weakened in 1988, ammonia concentrations in the euphotic zone remained below 5 µ M and increased to ~500 µ M beneath the chemocline. Meromixis ended in November 1988 and a large pulse of ammonia was injected into surface waters, resulting in surface ammonia concentrations of ~45 µ M. Because the pH of Mono Lake is high (9.8) the : ratio is ~5, and elevated surface concentrations of ammonia during the 2 yr following breakdown of meromixis resulted in high losses of nitrogen via ammonia volatilization (mean, ~10 mmol m − 2 d −1 ). High release rates of ammonia from the sediments were estimated from both the ammonia gradients in pore-water profiles (3–10 mmol m −2 d −1 ) and the balance of mixolimnetic nitrogen fluxes (4–10 mmol m −2 d −1 ). The monimolimnetic balance suggested fluxes of ammonia out of the sediments below the chemocline were reduced during meromixis.

California↗
USGS2003

Bioreactors for removing methyl bromide following contained fumigations

Use of methyl bromide (MeBr) as a quarantine, commodity, or structural fumigant is under scrutiny because its release to the atmosphere contributes to the depletion of stratospheric ozone. A closed-system bioreactor consisting of 0.5 L of a growing culture of a previously described bacterium, strain IMB-1, removed MeBr (>110 μmol L -1 ) from recirculating air. Strain IMB-1 grew slowly to high cell densities in the bioreactor using MeBr as its sole carbon and energy source. Bacterial oxidation of MeBr produced CO 2 and hydrobromic acid (HBr), which required continuous neutralization with NaOH for the system to operate effectively. Strain IMB-1 was capable of sustained oxidation of large amounts of MeBr (170 mmol in 46 d). In an open-system bioreactor (10-L fermenter), strain IMB-1 oxidized a continuous supply of MeBr (220 μmol L -1 in air). Growth was continuous, and 0.5 mol of MeBr was removed from the air supply in 14 d. The specific rate of MeBr oxidation was 7 × 10 -16 mol cell -1 h -1 . Bioreactors such as these can therefore be used to remove large quantities of contaminant MeBr, which opens the possibility of biodegradation as a practical means for its disposal.

Environmental Science & Technology↗
USGS2002

Measurement of in situ rates of selenate removal by dissimilatory bacterial reduction in sediments

A radioisotope method for measurement of bacteria respiratory reduction of selenate to elemental selenium in aquatic sediments was devised. Sediments were labeled with [75Se]selenate, incubated, and washed, and 75Se0(s) was determined as counts remaining in the sediments. Core profiles of selenate reduction, sulfate reduction, and denitrification were made simultaneously in the sediments of an agricultural wastewater evaporation pond. Most of the in situ selenate reduction (85%) and all the denitrificatation activities were confined to the upper 4-8 cm of the profile, whereas sulfate reduction was greatest below 8 cm (89% of total). The integrated areal rate of selenate reduction was 301 mol m-2 day-1, which results in a turnover of water column selenate in 82.4 days.

Environmental Science & Technology↗
USGS2002

Distribution, production, and ecophysiology of Picocystis strain ML in Mono Lake, California

A recently described unicellular chlorophytic alga isolated from meromictic Mono Lake, California, occupies a niche that spans two environments: the upper oxic mixolimnion and the deeper anoxic and highly reducing monimolimnion. This organism, Picocystis sp. strain ML, accounts for nearly 25% of the primary production during the winter bloom and more than 50% at other times of the year. In incubations, it is heavily grazed by the brine shrimp, Artemia monica. We assessed growth and photosynthetic parameters over broad ranges of irradiance, salinity, and pH and under oxic and anoxic conditions. Picocystis appears to be particularly adapted to low irradiance; we observed an order of magnitude increase in the cellular pigment concentrations, as well as marked increases in cellspecific photosynthetic parameters for cells acclimated to low-growth irradiance. Growth rates of 0.3–1.5 d21 were observed over a salinity range of 0–260‰ and a pH range of 4–12, with maximal growth at ;50 mmol photons m22 s21 , 40‰, and pH 6–10. Growth and oxygenic photosynthesis were observed under anoxic conditions at rates comparable to those measured under oxic conditions. The ability of the organism to acclimate and grow under such a broad range of environmental conditions makes it an important component of the Mono Lake ecosystem and likely contributes to its dominance of the monimolimnion/mixolimnion interface.

California↗
USGS2001

Continuous flow stable isotope methods for study of δ 13 C fractionation during halomethane production and degradation

Gas chromatography/mass spectrometry/isotope ratio mass spectrometry (GC/MS/IRMS) methods for δ 13 C measurement of the halomethanes CH 3 Cl, CH 3 Br, CH 3 I and methanethiol (CH 3 SH) during studies of their biological production, biological degradation, and abiotic reactions are presented. Optimisation of gas chromatographic parameters allowed the identification and quantification of CO 2 , O 2 , CH 3 Cl, CH 3 Br, CH 3 I and CH 3 SH from a single sample, and also the concurrent measurement of δ 13 C for each of the halomethanes and methanethiol. Precision of δ 13 C measurements for halomethane standards decreased (±0.3, ±0.5 and ±1.3‰) with increasing mass (CH 3 Cl, CH 3 Br, CH 3 I, respectively). Given that carbon isotope effects during biological production, biological degradation and some chemical (abiotic) reactions can be as much as 100‰, stable isotope analysis offers a precise method to study the global sources and sinks of these halogenated compounds that are of considerable importance to our understanding of stratospheric ozone destruction.

Rapid Communications in Mass Spectrometry↗
USGS1994

Isolation, growth, and metabolism of an obligately anaerobic, selenate- respiring bacterium, strain SES-3

A gram-negative, strictly anaerobic, motile vibrio was isolated from a selenate-respiring enrichment culture. The isolate, designated strain SES-3, grew by coupling the oxidation of lactate to acetate plus CO 2 with the concomitant reduction of selenate to selenite or of nitrate to ammonium. No growth was observed on sulfate or selenite, but cell suspensions readily reduced selenite to elemental selenium (Se 0 ). Hence, SES-3 can carry out a complete reduction of selenate to Se 0 . Washed cell suspensions of selenate-grown cells did not reduce nitrate, and nitrate-grown cells did not reduce selenate, indicating that these reductions are achieved by separate inducible enzyme systems. However, both nitrate-grown and selenate-grown cells have a constitutive ability to reduce selenite or nitrite. The oxidation of [ 14 C]lactate to 14 CO 2 coupled to the reduction of selenate or nitrate by cell suspensions was inhibited by CCCP (carbonyl cyanide m -chlorophenylhydrazone), cyanide, and azide. High concentrations of selenite (5 mM) were readily reduced to Se 0 by selenate-grown cells, but selenite appeared to block the synthesis of pyruvate dehydrogenase. Tracer experiments with [ 75 Se]selenite indicated that cell suspensions could achieve a rapid and quantitative reduction of selenite to Se 0 . This reduction was totally inhibited by sulfite, partially inhibited by selenate or nitrite, but unaffected by sulfate or nitrate. Cell suspensions could reduce thiosulfate, but not sulfite, to sulfide. These results suggest that reduction of selenite to Se 0 may proceed, in part, by some of the components of a dissimilatory system for sulfur oxyanions.

Nevada↗
USGS1993

Aspects of the biogeochemistry of methane in Mono Lake and the Mono Basin of California

Above-ambient levels of methane and higher hydrocarbons were detected in the atmosphere of the Mono Basin. These gases emanated from several different sources, including natural gas seeps (thermogenic and biogenic), and methanogenic activity in sediments. Seeps were distributed over nearly 33% of the lake bottom and were also present in the exposed former lakebed. They originated from one or more natural gas deposits that underlie the basin. Seeps associated with hot springs had a thermogenic character, whereas the others had the characteristics of bacterially formed gases. The radiocarbon content of methane in all seep gases was low (5-11% modern carbon), indicating an age of greater than about 20,000 years. Dissolved methane increased with depth in the sediments, ultimately reaching saturation levels (1-3 mM). The outward diffusive flux of methane into the anoxic bottom waters elevated concentrations to 60 µM during the 1984-1988 meromictic interval. The radiocarbon content of hypolimnion methane was equivalent to that of the dissolved inorganic carbon (~80% modern carbon), indicating derivation from current methanogenic activity. Oxidation by anaerobic bacteria was the major sink for this methane. Methane that escaped oxidation transited to the epilimnion where it attained supersaturation (0.1-3.0 µM) relative to the atmosphere. Measured outward fluxes over a 2-year period were highly variable, ranging from 0.01 to 4.82 mmoles CH 4 m -2 d -1 . Bacterial activity was detected in the sediments of the hypolimnion High rates of sulfate reduction (~200 µmoles L -1 d -1 ) were measured in the upper 5-cm interval but decreased > 10-fold with depth. The highest rate of methanogenic activity was ~1 µmole L -1 d -1 , as measured by reduction of 14 CO 2 . Bacteria metabolized dimethylsulfide, trimethylamine, acetate, and glucose to primarily CO 2 and some CH 4 . Turnovers of glucose (k = 0.16 d -1 ) and trimethylamine (k = 0.09 d -1 ) were highest in the upper 2.5-cm interval and decreased as much as 10-fold with depth. These results confirm that a low rate of methanogenic activity occurs in this extreme environment and is the source of methane to the hypolimnion.

California↗
USGS1989

Selenate reduction to elemental selenium by anaerobic bacteria in sediments and culture: Biogeochemical significance of a novel, sulfate-independent respiration

Interstitial water profiles of SeO 4 2− , SeO 3 2− , SO 4 2− , and Cl − in anoxic sediments indicated removal of the seleno-oxyanions by a near-surface process unrelated to sulfate reduction. In sediment slurry experiments, a complete reductive removal of SeO 4 2− occurred under anaerobic conditions, was more rapid with H 2 or acetate, and was inhibited by O 2 , NO 3 − , MnO 2 , or autoclaving but not by SO 4 2− or FeOOH. Oxidation of acetate in sediments could be coupled to selenate but not to molybdate. Reduction of selenate to elemental selenium was determined to be the mechanism for loss from solution. Selenate reduction was inhibited by tungstate and chromate but not by molybdate. A small quantity of the elemental selenium precipitated into sediments from solution could be resolublized by oxidation with either nitrate or FeOOH, but not with MnO 2 . A bacterium isolated from estuarine sediments demonstrated selenate-dependent growth on acetate, forming elemental selenium and carbon dioxide as respiratory end products. These results indicate that dissimilatory selenate reduction to elemental selenium is the major sink for selenium oxyanions in anoxic sediments. In addition, they suggest application as a treatment process for removing selenium oxyanions from wastewaters and also offer an explanation for the presence of selenite in oxic waters.

California↗
USGS1986

Metabolism of reduced methylated sulfur compounds in anaerobic sediments and by a pure culture of an estuarine methanogen

Addition of dimethylsulfide (DMS), dimethyldisulfide (DMDS), or methane thiol (MSH) to a diversity of anoxic aquatic sediments (e.g., fresh water, estuarine, alkaline/hypersaline) stimulated methane production. The yield of methane recovered from DMS was often 52 to 63%, although high concentrations of DMS (as well as MSH and DMDS) inhibited methanogenesis in some types of sediments. Production of methane from these reduced methylated sulfur compounds was blocked by 2-bromoethanesulfonic acid. Sulfate did not influence the metabolism of millimolar levels of DMS, DMDS, or MSH added to sediments. However, when DMS was added at ∼2-μM levels as [ 14 C]DMS, metabolism by sediments resulted in a 14 CH 4 / 14 CO 2 ratio of only 0.06. Addition of molybdate increased the ratio to 1.8, while 2-bromoethanesulfonic acid decreased it to 0, but did not block 14 CO 2 production. These results indicate the methanogens and sulfate reducers compete for DMS when it is present at low concentrations; however, at high concentrations, DMS is a “noncompetitive” substrate for methanogens. Metabolism of DMS by sediments resulted in the appearance of MSH as a transient intermediate. A pure culture of an obligately methylotrophic estuarine methanogen was isolated which was capable of growth on DMS. Metabolism of DMS by the culture also resulted in the transient appearance of MSH, but the organism could grow on neither MSH nor DMDS. The culture metabolized [ 14 C]-DMS to yield a 14 CH 4 / 14 CO 2 ratio of ∼2.8. Reduced methylated sulfur compounds represent a new class of substrates for methanogens and may be potential precursors of methane in a variety of aquatic habitats.

California↗