Geology topics

Lars G. Rudstam

Publications and source records attributed to Lars G. Rudstam.

At least 37 records · Page 2Linked to original sources

USGS2021

Hydroacoustic survey standardization: Inter-vessel differences in fish densities and potential effects of vessel avoidance

Hydroacoustics is used broadly to assess fish populations in marine and freshwater systems. Large-scale surveys often employ multiple vessels to complete a survey. Vessels can be a source of variation in multi-vessel surveys, and accounting for this variation is critical to precise and accurate assessments, whether as indices or measures of absolute abundance. We examined areal and volumetric density estimates, area backscattering coefficient (ABC), and mean target strength (TS) produced by three vessels in Lake Erie along three cross-lake transects in July 2014. Our study showed positive correlation in areal ABC, mean TS, and density among vessels; however, there was an almost 30 % higher density obtained with the largest vessel, on average. As a result, vessel choice could contribute to variation and/or bias in forage fish surveys deploying multi-vessels conducted on Lake Erie. Additionally, in some situations, differential depth patterns of fish contributed to vessel related differences in survey results suggesting a difference in vessel avoidance behaviors among targeted forage species, primarily emerald shiner Notropis atherinoides and rainbow smelt Osmerus mordax . This work demonstrates the potential magnitude of differences among vessels and highlights the need to identify and account for or otherwise control for these effects when monitoring or managing fisheries through standardized hydroacoustic assessments surveys.

Lake Erie↗

USGS2021

Lake-wide annual status of Mysis diluviana population in Lake Michigan in 2015

Mysis diluviana is one of the most abundant zooplankton by biomass in the Laurentian Great Lakes of North America, a predator of other zooplankton and an important prey for fishes. Studies of long-term trends in Lake Michigan have shown 2005–2016 densities to be 50–80% lower than 1990s densities, but these observations have been based on annual monitoring that is either spatially or seasonally limited. We combined Lake Michigan Mysis data from three annual programs and the 2015 Cooperative Science and Monitoring Initiative to achieve broad spatial coverage during spring, summer, and fall of 2015 and broad depth coverage during spring 2016. Lake-wide, annual density and biomass were 82 (SE: 10) Mysis /m 2 and 200 (SE: 36) mg dry mass/m 2 . Density and biomass estimates were highest offshore, generally higher in the north basin, and seasonally highest in summer. Annual lake-wide averages for depths >30 m were better captured by seasonally-extensive annual programs than spatially-extensive annual programs, although spring sampling may bias annual values low. Mysis cohorts grew 0.026 mm/d (age-0) and 0.007 to 0.027 mm/d (age-1). Annual mortality was 81–98%. Reproduction was fall-spring and seasonal lake-wide estimates ranged from 0.6 to 19.1% females brooding, 13–20 embryos/brood, and 3–46 embryos/m 2 . Annual production (423 mg dry mass/m 2 /yr, SE: 31) was lower than all but one previous estimate from lakes Michigan, Huron, and Ontario. While Mysis tend to persist, low Mysis production may be a concern for prey fishes that feed on Mysis .

Lake Michigan↗

USGS2021

Consequences of changing water clarity on the fish and fisheries of the Laurentian Great Lakes

Human-driven environmental change underlies recent changes in water clarity in many of the world’s great lakes, yet our understanding of the consequences of these changes on the fish and fisheries they support remains incomplete. Herein, we offer a framework to organize current knowledge, guide future research, and help fisheries managers understand how water clarity can affect their valued populations. Emphasizing Laurentian Great Lakes findings where possible, we describe how changing water clarity can directly affect fish populations and communities by altering exposure to ultraviolet radiation, foraging success, predation risk, reproductive behavior, or territoriality. We also discuss how changing water clarity can affect fisheries harvest and assessment through effects on fisher behavior and sampling efficiency (i.e., catchability). Finally, we discuss whether changing water clarity can affect understudied aspects of fishery performance, including economic and community benefits. We conclude by identifying generalized predictions and discuss their implications for priority research questions for the Laurentian Great Lakes. Even though the motivation for this work was regional, the breadth of the review and generality of the framework are readily transferable to other freshwater and marine habitats.

Great Lakes↗

USGS2021

2020 Status of the Lake Ontario lower trophic levels

Significant Findings for Year 2020: Note that due to covid-19 restrictions, offshore sampling was limited in 2020. 1) May – Oct total phosphorus (TP) in 2020 was 10.6 µg/L (offshore) and 7.7 µg/L (nearshore), higher than the long-term (1995-2019) average in the offshore (6.2 µg/L) and close to average in the nearshore (7.8 µg/L); mean TP values for the past decade (2010-2019) were 6.0 µg/L and 7.9 µg/L in the offshore and nearshore, respectively. In 2020, TP concentrations were significantly higher (p=0.03) in the offshore compared to the nearshore. Note that offshore duplicate samples had high relative percent difference (average 54%. 6-117%) making inferences for the offshore in 2020 uncertain. 2) May – Oct epilimnetic chlorophyll-a was similar at nearshore (1.9 µg/L) and offshore (2.1 µg/L) sites. These values were slightly higher than the average for 1995 – 2019 (1.7 µg/L, offshore; 1.5 µg/L, nearshore) and higher than for the last decade (1.4 µg/L, both offshore and nearshore). 3) May – Oct Secchi depth ranged from 3.5 m to 10.4 m (11 ft to 34 ft) at individual sites and was not significantly different between nearshore (6.3 m; 20.7 ft) and offshore (6.5 m; 21.3 ft) locations. Long-term (1995-2019) average was 7.2 m in the offshore and 6.4 m in the nearshore; means for the last decade were 7.8 m in the offshore and 6.2 m in the nearshore. 4) Despite higher TP values in 2020 than in recent years, TP, chlorophyll-a and Secchi depth are indicative of oligotrophic conditions in the offshore of Lake Ontario. 5) Nearshore summer zooplankton biomass was 10.5 µg/L, near the all-time low (9.4 µg/L, 2017) since monitoring began in 1995. Offshore epilimnetic summer zooplankton biomass was 11.7 µg/L. These values are similar to biomass in the last decade (2010-2019). 6) Peak (July) epilimnetic biomass of Cercopagis was 3.0 µg/L in the nearshore and represented 25% of the zooplankton community at that time; Cercopagis was absent from the July offshore epilimnetic samples in 2020 but was present in whole water column samples taken in August by other agencies. Epilimnetic biomass of Bythotrephes peaked in late-September in both the nearshore (1.0 µg/L) and offshore (1.8 µg/L) and represented 10% and 18% of the zooplankton community at those times, respectively. 7) Summer nearshore and offshore epilimnetic zooplankton density and biomass declined significantly 1995 – 2020. The declines were due mainly to reductions in cyclopoid copepods in both habitats.

Lake Ontario↗

USGS2020

Benthic habitat is an integral part of freshwater Mysis ecology

Diel vertical migration (DVM) is common in aquatic organisms. The trade‐off between reduced predation risk in deeper, darker waters during the day and increased foraging opportunities closer to the surface at night is a leading hypothesis for DVM behaviour. Diel vertical migration behaviour has dominated research and assessment frameworks for Mysis , an omnivorous mid‐trophic level macroinvertebrate that exhibits strong DVM between benthic and pelagic habitats and plays key roles in many deep lake ecosystems. However, some historical literature and more recent evidence indicate that mysids also remain on the bottom at night, counter to expectations of DVM. We surveyed the freshwater Mysis literature using Web of Science (WoS; 1945–2019) to quantify the frequency of studies on demographics, diets, and feeding experiments that considered, assessed, or included Mysis that did not migrate vertically but remained in benthic habitats. We supplemented our WoS survey with literature searches for relevant papers published prior to 1945, journal articles and theses not listed in WoS, and additional references known to the authors but missing from WoS (e.g. only 47% of the papers used to evaluate in situ diets were identified by WoS). Results from the survey suggest that relatively little attention has been paid to the benthic components of Mysis ecology. Moreover, the literature suggests that reliance on Mysis sampling protocols using pelagic gear at night provides an incomplete picture of Mysis populations and their role in ecosystem structure and function. We summarise current knowledge of Mysis DVM and provide an expanded framework that more fully considers the role of benthic habitat. Acknowledging benthic habitat as an integral part of Mysis ecology will enable research to better understand the role of Mysis in food web processes.

Freshwater Biology↗

USGS2020

Storm impacts on phytoplankton community dynamics in lakes

In many regions across the globe, extreme weather events such as storms have increased in frequency, intensity, and duration due to climate change. Ecological theory predicts that such extreme events should have large impacts on ecosystem structure and function. High winds and precipitation associated with storms can affect lakes via short‐term runoff events from watersheds and physical mixing of the water column. In addition, lakes connected to rivers and streams will also experience flushing due to high flow rates. Although we have a well‐developed understanding of how wind and precipitation events can alter lake physical processes and some aspects of biogeochemical cycling, our mechanistic understanding of the emergent responses of phytoplankton communities is poor. Here we provide a comprehensive synthesis that identifies how storms interact with lake and watershed attributes and their antecedent conditions to generate changes in lake physical and chemical environments. Such changes can restructure phytoplankton communities and their dynamics, as well as result in altered ecological function (e.g., carbon, nutrient and energy cycling) in the short‐ and long‐term. We summarize the current understanding of storm‐induced phytoplankton dynamics, identify knowledge gaps with a systematic review of the literature, and suggest future research directions across a gradient of lake types and environmental conditions.

Global Change Biology↗

USGS2020

Differentiation between lake whitefish and cisco eggs based on diameter

Cisco ( Coregonus artedi ) and lake whitefish ( Coregonus clupeaformis ) are native fish species of management concern in the Laurentian Great Lakes that often overlap in spawning locations and timing. Thus, species-level inference from in situ sampling requires methods to differentiate their eggs. Genetic barcoding and hatching eggs to visually identify larvae are used but can be time and cost intensive. Observations in published literature indicate that lake whitefish eggs may be larger than cisco eggs in the Great Lakes, but this has not yet been substantiated. Samples from shared spawning grounds are unlikely to contain similarly sized or colored eggs from other species. Thus, we assessed whether lake whitefish and cisco eggs could be separated based on size alone. Fertilized, hardened eggs were collected in situ during spawning at Elk Rapids, Lake Michigan and Chaumont Bay, Lake Ontario and preserved in ethanol. Individual eggs were measured and genetically identified. Mean diameter for cisco (2.45 mm, SD = 0.22, n = 444) was smaller than for lake whitefish (3.21 mm, SD = 0.20, n = 99). We used classification trees to identify a species-separating size threshold of 2.88 mm (95% bootstrap CI = [2.877, 2.976]), which classified eggs with an accuracy rate of 96%. Differences between species across other samples from the same locations were mostly consistent with the threshold size, but we suggest validation if applying this method to other populations. Separation of cisco and lake whitefish eggs by diameter can be accurate, efficient, and especially suitable for large sample sizes.

Lake Michigan, Lake Ontario↗

USGS2020

2019 Status of the Lake Ontario Lower Trophic Levels

Spring total phosphorus (TP) in 2019 was 3.2 µg/L (offshore) and 4.7 µg/L (nearshore), both all-time lows; however, there is no significant time trend in our data series (1995-2019 for nearshore; 2002-2019 for offshore). Apr/May – Oct mean TP concentrations were low at both nearshore and offshore locations (range, 3.7 – 6.5 µg/L). TP and SRP concentrations were not significantly different between nearshore and offshore habitats. Chlorophyll- a and Secchi depth values are indicative of oligotrophic conditions in nearshore and offshore habitats. Offshore summer chlorophyll-a declined significantly 1995 – 2019. Nearshore chlorophyll- a increased 1995 – 2004 and then stabilized 2005 – 2019. In 2019, epilimnetic chlorophyll-a averaged between 1.3 and 2.9 μg/L across sites, and Apr/May – Oct concentrations were not significantly different between nearshore and offshore sites. Summer Secchi depth increased significantly in the offshore 1995 – 2019 from ~6 m to ~8 m. In the nearshore Secchi depth increased 1995 – 2004 but has remained around 6 m since 1999. Apr/May – Oct Secchi depth ranged from 3.8 m to 9.1 m (12 ft to 30 ft) at individual sites and was significantly higher offshore (7.6 m; 25 ft) than nearshore (5.7 m; 19 ft). In 2019, nearshore summer zooplankton biomass increased to 16.7 mg/m 3 after an all-time low (10.3 mg/m 3 ) in 2017. Offshore biomass (12.0 mg/m 3 ) was near the all-time low (8.1 mg/m 3 , 2006). Apr/May – Oct epilimnetic zooplankton density and biomass were not different between nearshore and offshore sites. However, zooplankton average size was significantly higher in the offshore (0.72 mm) than the nearshore (0.61 mm). Peak (July) epilimnetic biomass of Cercopagis was 2.4 mg/m 3 in the nearshore and 1.4 mg/m 3 in the offshore. Peak (September) epilimnetic biomass of Bythotrephes was 2.0 mg/m 3 in the nearshore and 2.9 mg/m 3 in the offshore. Summer nearshore zooplankton density and biomass declined significantly 1995 – 2004 and then remained stable 2005 – 2019. The decline was due mainly to reductions in cyclopoids copepods. Summer epilimnetic daytime offshore zooplankton density decreased significantly 1995 – 2004, but biomass did not. Density and biomass declined significantly 1995 – 2019. Density was 3885/m 3 in 2019, about one-fourth the level observed the previous year. Offshore summer epilimnetic zooplankton biomass in 2019 was 12 mg/m 3 —well below the mean from 2005 – 2018 (20 mg/m 3 ). Most offshore zooplankton biomass was found in the metalimnion in July and early-October, and in the hypolimnion in September. Limnocalanus dominated the metalimnion in July while daphnids comprised most of the biomass in October. In September, Limnocalanus dominated the hypolimnion.

New York, Ontario↗

USGS2019

Long-term population dynamics of dreissenid mussels (Dreissena polymorpha and D. rostriformis): A cross-system analysis

Dreissenid mussels (including the zebra mussel Dreissena polymorpha and the quagga mussel D. rostriformis ) are among the world's most notorious invasive species, with large and widespread ecological and economic effects. However, their long‐term population dynamics are poorly known, even though these dynamics are critical to determining impacts and effective management. We gathered and analyzed 67 long‐term (>10 yr) data sets on dreissenid populations from lakes and rivers across Europe and North America. We addressed five questions: (1) How do Dreissena populations change through time? (2) Specifically, do Dreissena populations decline substantially after an initial outbreak phase? (3) Do different measures of population performance (biomass or density of settled animals, veliger density, recruitment of young) follow the same patterns through time? (4) How do the numbers or biomass of zebra mussels or of both species combined change after the quagga mussel arrives? (5) How does body size change over time? We also considered whether current data on long‐term dynamics of Dreissena populations are adequate for science and management. Individual Dreissena populations showed a wide range of temporal dynamics, but we could detect only two general patterns that applied across many populations: (1) Populations of both species increased rapidly in the first 1–2 yr after appearance, and (2) quagga mussels appeared later than zebra mussels and usually quickly caused large declines in zebra mussel populations. We found little evidence that combined Dreissena populations declined over the long term. Different measures of population performance were not congruent; the temporal dynamics of one life stage or population attribute cannot generally be accurately inferred from the dynamics of another. We found no consistent patterns in the long‐term dynamics of body size. The long‐term dynamics of Dreissena populations probably are driven by the ecological characteristics (e.g., predation, nutrient inputs, water temperature) and their temporal changes at individual sites rather than following a generalized time course that applies across many sites. Existing long‐term data sets on dreissenid populations, although clearly valuable, are inadequate to meet research and management needs. Data sets could be improved by standardizing sampling designs and methods, routinely collecting more variables, and increasing support.

Ecosphere↗

USGS2019

Assessing the spawning ecology of fish in situ using a benthic pump sampler

In situ observations of incubating fish eggs can identify spawning sites and spawning habitat preferences, informing the ecology of fishes with benthic eggs. Suction pumps have been used to sample benthic-incubating, non-adhesive fish eggs, yet their sampling efficiency is not well known. Imperfect or systematically variable egg detection could bias resulting ecological inference if left unaddressed. Here we present results from replicate field trials and examine the effects of varying substrate type, intake design, sampling effort, and egg density on the ability of a gasoline-powered diaphragm pump, rated for 66 gal/min (approx. 250 L/min), to detect egg presence and estimate relative or absolute abundance. A wider box-shaped intake was effective at detecting the presence of eggs on fine, silty substrates, but had limited effectiveness on larger-grained substrates. A narrower cone-shaped intake consistently detected the presence of eggs on silt, gravel, and shallow cobble, and demonstrated potential to measure relative and absolute egg abundance. Neither intake design was able to collect eggs from deep interstitial spaces (e.g. several layers of cobble), indicating that there are limitations to the types of substrates on which benthic sampling pumps can operate. Both intake designs often collected eggs from outside the edge of the intake opening. Most eggs were collected within a two minute period, but increasing pumping time to four minutes produced better egg detection outcomes. Our results suggest that stationary benthic sampling pumps are viable tools for directly sampling incubating eggs on most substrates, but have imperfect and varying sampling efficiency resulting from intake design and substrate type.

Fisheries Research↗

USGS2019

Status of Mysis diluviana in Lake Ontario in 2013: lower abundance but higher fecundity than in the 1990s

Mysis diluviana is a major component of prey fish diets in the Great Lakes, so annual production of M. diluviana is important for understanding and modeling energy flow through Great Lakes food webs. However, only three lake-wide measurements of M. diluviana annual production in Lake Ontario are currently available (1971, 1990, 1995). During 2013, lake-wide coverage of Lake Ontario was achieved during four periods from April to November. Annual mean density and biomass of M. diluviana in 2013 were 99 #/m 2 (SE: 8) and 318 mg dw/m 2 (SE: 28) – approximately half of values observed in 1990s. M. diluviana comprised 13–30% of offshore zooplankton biomass in each period. Reproduction peaked in fall, with mean brood size of 32 embryos (range: 11–49), at least 10% larger than in 1990s. Generation time was two years from embryo to initial reproduction. Growth rates were 0.052 mm/d for the age-0 cohort and 0.027 mm/d for the age-1 cohort. Age-0 growth rate was significantly higher than in 1980s–90s (0.035 mm/d). Annual production in 2013 was 0.85 g dw/m 2 /yr (SE: 0.03) which was 30–40% of values observed in 1990 and 1995 (2.23 and 2.53 g/m 2 /yr). Annual production to biomass ratio (P/B) in 2013 was 2.65 /yr which was 80–85% of values observed in 1990 and 1995 (3.24 and 3.11 /yr), but this difference was not statistically significant. Our results suggest that changes in annual production over time can be estimated using changes in biomass over time and a mean P/B ratio.

Lake Ontario↗

USGS2019

First record of the non-indigenous parasitic copepod Neoergasilus japonicus (Harada, 1950) in the Lake Ontario Watershed: Oneida Lake, New York

Four specimens of the Asiatic parasitic copepod Neoergasilus japonicus (Harada, 1930) were collected from Oneida Lake, New York in September 2018; one specimen was from a white sucker Catostomus commersonii , another from a green sunfish Lepomis cyanellus , and two from a bluegill Lepomis macrochirus . The four adult female specimens were found attached to the base of the gills of their respective hosts along with other ergasilid species. The average total length of the adult female N. japonicus specimens we found was 0.609 mm. These detections represent the first known occurrence of this non-native species in the state of New York, extends the easternmost distribution of this parasite over 400 miles, and now includes the Lake Ontario watershed for the first time. It is commonly believed that the international aquaculture industry and aquarium fish trade are the most likely vectors of dispersal for N. japonicus . Monitoring the spread of non-indigenous aquatic species is an important step towards the development of management plans and mitigation efforts with regards to the anthropogenic causes of dispersal, and fish parasites are no exception.

New York↗

USGS2019

Early mortality and freshwater forage fish recruitment: Nonnative alewife and native rainbow smelt interactions in Lake Champlain

We studied the consequences of a nonnative species introduction and changes in temperature on early mortality and recruitment of native rainbow smelt ( Osmerus mordax ) and nonnative alewife ( Alosa pseudoharengus ) in Lake Champlain using a simulation model. Distribution patterns of adults and young-of-the-year (YOY) fish were predicted using a model based on observed distribution of different age groups as a function of temperature and light profiles simulated on a daily basis. Mortality rates averaged over the growing season were calculated as a function of fish densities and overlap between adults and YOY. Survival of YOY rainbow smelt and alewife depended on which predator was most abundant. Rainbow smelt YOY mortality rates are highest when rainbow smelt adults are abundant, and alewife YOY mortality rates are highest when alewife adults are abundant, potentially allowing coexistence. August and September mortality rates were higher in the climate change scenario because of increased overlap of adults and YOY of both species. These results indicate that accounting for spatiotemporal fish distribution patterns can be important when forecasting the interacting effects of climate change and aquatic invasive species on fish recruitment.

New York, Quebec, Vermont↗

USGS2019

2018 Status of the Lake Ontario lower trophic levels

Significant Findings for Year 2018: 1) Offshore spring total phosphorus (TP) in 2018 was 7.0 µg/L; values have remained stable since 2001. Offshore soluble reactive phosphorus (SRP) remained low (1.3 µg/L) in 2018; Apr/May – Oct mean values have been stable in nearshore and offshore habitats since 1998 (range, 0.4 – 3.3 µg/L). Apr/May – Oct mean TP concentrations were low at both nearshore and offshore locations (range, 3.9 – 7.8 µg/L). TP and SRP concentrations were not significantly different between nearshore and offshore habitats. 2) Chlorophyll-a and Secchi depth values are indicative of oligotrophic conditions in nearshore and offshore habitats. Offshore summer chlorophyll-a was stable 2000 – 2018. Nearshore chlorophyll-a increased 1995 - 2004 and then stabilized 2005 – 2018; values were below the long-term mean in 2018. In 2018, epilimnetic chlorophyll-a averaged between 0.9 and 1.8 μg/L across sites, and offshore and nearshore Apr/May – Oct concentrations were not significantly different. Summer Secchi depth increased significantly in the offshore 2000 – 2018 and in the nearshore 1995 – 2004. Apr/May – Oct Secchi depth ranged from 4.7 m to 13.5 m (15 ft to 44 ft) at individual sites and was not significantly different between offshore (8.6 m; 28 ft) and nearshore (6.3 m; 21 ft) locations. 3) In 2018, nearshore summer zooplankton biomass increased slightly to 10.7 mg/m3 after an all-time low (10.3 mg/m 3 ) in 2017. Apr/May – Oct epilimnetic zooplankton density was significantly higher in the offshore than the nearshore, but zooplankton size and biomass were not different. Cyclopoid copepods were primarily responsible for the higher density in the offshore. 4) Peak (July) epilimnetic biomass of Cercopagis was 1.3 mg/m 3 in the nearshore and 1.9 mg/m 3 in the offshore. Peak (September-October) epilimnetic biomass of Bythotrephes was 0.4 mg/m 3 in the nearshore and 0.6 mg/m3 in the offshore. Bythotrephes biomass has increased significantly in the nearshore, 1995 – 2018. 5) Summer nearshore zooplankton density and biomass declined significantly 1995 – 2004 and then remained stable 2005 – 2018. The decline was due mainly to reductions in cyclopoids copepods. 6) Summer epilimnetic daytime offshore zooplankton density and biomass decreased significantly 2000 – 2018, but density increased marginally since 2005. Density was 16000/m 3 in 2018, three times the levels seen 2015 – 2017. Offshore summer epilimnetic zooplankton biomass in 2018 was 11 mg/m 3 — well below the mean from 2005 – 2017 (20 mg/m 3 ). 7) Most offshore zooplankton biomass was found in the metalimnion in July and early-September, and in the hypolimnion in late-September and October. Cyclopoids dominated the metalimnion in July while daphnids and cyclopoids comprised most of the biomass in September. Daphnids dominated the October hypolimnion.

Lake Ontario↗

USGS2019

2017 Status of the Lake Ontario Lower Trophic Levels

Significant Findings for Year 2017: 1) Offshore spring total phosphorus (TP) in 2017 was 4.4 µg/L; values remained stable since 2001. Offshore soluble reactive phosphorus (SRP) remained low (1.1 µg/L) in 2017; Apr/May – Oct mean values have been stable in nearshore and offshore habitats since 1998 (range, 0.4 – 3.3 µg/L). Apr/May – Oct mean TP concentrations were low at both nearshore and offshore locations (range, 3.7 – 9.0 µg/L). TP and SRP concentrations were significantly higher in nearshore compared to offshore habitats (7.9 µg/L vs 5.3 µg/L, TP; 1.7 µg/L vs 1.0 µg/L, SRP). 2) Chlorophyll-a and Secchi depth values are indicative of oligotrophic conditions in nearshore and offshore habitats. Offshore summer chlorophyll-a was stable 2000 – 2017. Nearshore chlorophyll-a increased 1995 - 2004 but then declined 2005 – 2015; values were above the long-term mean for 2016 and 2017. In 2017, epilimnetic chlorophyll-a averaged between 1.2 and 2.6 μg/L across sites, and offshore and nearshore Apr/May – Oct concentrations were not significantly different. Summer Secchi depth increased significantly in the offshore 2005 – 2017 and in the nearshore 1995 – 2004. There was no trend in either habitat 1995 – 2017. Apr/May – Oct Secchi depth ranged from 4.4 m to 12.5 m at individual sites and was not significantly different between offshore (8.9 m) and nearshore (5.7 m) locations. 3) In 2017, nearshore summer zooplankton biomass was at an all-time low (10.3 mg/m3). Apr/May – Oct epilimnetic zooplankton density was not different between the offshore and the nearshore, but zooplankton size and biomass were significantly higher in the offshore. (0.7 mm vs 0.52 mm and 14.2 mg/m3 vs 7.7 mg/m3). Daphnid, calanoid copepod, and cyclopoid biomass were all higher in the offshore. 4) Peak (July) epilimnetic biomass of Cercopagis was 2.5 mg/m3 in the nearshore and 1.6 mg/m3 in the offshore. Peak (September/October) epilimnetic biomass of Bythotrephes was 0.9 mg/m3 in the nearshore and 0.5 mg/m3 in the offshore. Bythotrephes biomass has increased significantly in the nearshore, 1995 – 2017. 5) Summer nearshore zooplankton density and biomass declined significantly 1995 – 2004 and then remained stable 2005 – 2017. The decline was due mainly to reductions cyclopoids. 6) Summer epilimnetic offshore zooplankton density and biomass increased significantly 2005 – 2017, due mainly to increases in cyclopoids and daphnids. In 2017, offshore summer epilimnetic zooplankton biomass was 14 mg/m3—well below the mean from 2005 – 2016 (21 mg/m3). 7) Most offshore zooplankton biomass was found in the metalimnion in July and September, and in the hypolimnion in October. Limnocalanus and cyclopoids dominated the metalimnion in July while daphnids and cyclopoids comprised most of the biomass in September. Daphnids dominated the October hypolimnion. Whole water column samples show a declining zooplankton biomass 2015 – 2017. Bythotrephes biomass in whole water column tows is the highest it has been, 2010 – 2017.

Lake Ontario↗

USGS2018

Piscivore diet shifts and trophic level change after Alewife establishment in Lake Champlain

Invasions and deliberate introductions of new prey species are likely to affect prey choice and trophic level of resident predators. Rainbow Smelt ( Osmerus mordax ) and Alewife ( Alosa pseudoharengus ) are common prey fish species in lakes throughout North America either as native or non‐native species. The establishment of Alewife in the 2000s in a lake with a native Rainbow Smelt population (Lake Champlain) presented an opportunity to study changes in the diet and trophic level of fish already established in the system. Using stable isotope analysis, we found that Alewife became a major component of predator diets, in particular of the diets of Atlantic Salmon ( Salmo salar ) and Walleye ( Sander vitreus ). Lake Trout ( Salvelinus namaycush ) consumed relatively few Alewives. For Walleye (the predator with both pre‐ and post‐Alewife isotope ratios available), the δ 15 N values decreased significantly from the pre‐Alewife period of the late 1990s, indicating that Walleye feed at lower trophic levels when Alewife are present. Predation on Alewife was correlated with the amount of spatial overlap of predators and prey. Our results show that the introduction of Alewife has altered the predator‐prey linkages in Lake Champlain; alterations that can have major effects on food web structure and trophic cascades.

Transactions of the American Fisheries Society↗

USGS2018

Comparison of genetic and visual identification of cisco and lake whitefish larvae from Chaumont Bay, Lake Ontario

Cisco Coregonus artedi are an important component of native food webs in the Great Lakes, and their restoration is instrumental to the recovery of lake trout Salvelinus namaycush and Atlantic salmon Salmo salar . Difficulties with visual identification of larvae can confound early life history surveys, as cisco are often difficult to distinguish from lake whitefish C. clupeaformis . We compared traditional visual species identification methods to genetic identifications based on barcoding of the mitochondrial cytochrome C oxidase I gene for 726 coregonine larvae caught in Chaumont Bay, Lake Ontario. We found little agreement between the visual characteristics of cisco identified by genetic barcoding and the most widely used dichotomous key, and the considerable overlap in ranges of traditionally utilized metrics suggest that visual identification of coregonine larvae from Chaumont Bay is impractical. Coregonines are highly variable and plastic species, and often display wide variations in morphometric characteristics across their broad range. This study highlights the importance of developing accurate, geographically appropriate larval identification methods in order to best inform cisco restoration and management efforts.

New York↗

USGS2017

Using variance structure to quantify responses to perturbation in fish catches

We present a case study evaluation of gill-net catches of Walleye Sander vitreus to assess potential effects of large-scale changes in Oneida Lake, New York, including the disruption of trophic interactions by double-crested cormorants Phalacrocorax auritus and invasive dreissenid mussels. We used the empirical long-term gill-net time series and a negative binomial linear mixed model to partition the variability in catches into spatial and coherent temporal variance components, hypothesizing that variance partitioning can help quantify spatiotemporal variability and determine whether variance structure differs before and after large-scale perturbations. We found that the mean catch and the total variability of catches decreased following perturbation but that not all sampling locations responded in a consistent manner. There was also evidence of some spatial homogenization concurrent with a restructuring of the relative productivity of individual sites. Specifically, offshore sites generally became more productive following the estimated break point in the gill-net time series. These results provide support for the idea that variance structure is responsive to large-scale perturbations; therefore, variance components have potential utility as statistical indicators of response to a changing environment more broadly. The modeling approach described herein is flexible and would be transferable to other systems and metrics. For example, variance partitioning could be used to examine responses to alternative management regimes, to compare variability across physiographic regions, and to describe differences among climate zones. Understanding how individual variance components respond to perturbation may yield finer-scale insights into ecological shifts than focusing on patterns in the mean responses or total variability alone.

Transactions of the American Fisheries Society↗