Geology topics

Krysten L. Schuler

Publications and source records attributed to Krysten L. Schuler.

At least 19 recordsLinked to original sources

USGS2026

Exploring management options for moose at their southern range limits considering growing disease risk

1. Populations of cold-adapted species are increasingly vulnerable along their low-latitude range limits due to shifting environmental conditions, biotic interactions, and anthropogenic pressures. Managing these populations is particularly challenging because of complex ecological dynamics, conflicting stakeholder interests, and decision-making under uncertainty. 2. We explored population growth (λ) of moose ( Alces alces ) under different hypothetical management scenarios, simulating combinations of five hypothetical harvest levels with three levels of disease impact. 3. Facing current disease, the population could support multiple levels of conservative harvest. Under elevated levels of disease-caused mortality, projections indicated declines for all harvest scenarios. We projected increases across all harvest scenarios when overlap with white-tailed deer ( Odocoileus virginianus ) was hypothetically reduced and disease mortality in moose minimized. We investigated whether uncertainty in moose demographic parameters altered population trajectory, and found changes in adult fecundity and calf survival could alter harvest decisions when λ<1. 4. Practical implication . While moose population trajectories may remain stable under current conditions, management of white-tailed deer that reduces moose exposure to lethal parasites may provide the greatest utility in sustaining moose in New York given the potential for increased disease. Continued monitoring of population size, growth, and disease prevalence would inform sustainable moose harvest levels that balance social and ecological management considerations.

New York↗

USGS2025

Moose survival and habitat‐associated risk of endoparasites

Parasite-induced morbidity and mortality can alter the trajectories of incidental host populations. Yet, parasites rarely act in isolation and may be one of a multitude of biotic and abiotic stressors that collectively shape mortality risk in vertebrate populations. We quantified sources of mortality in a low-density population of moose ( Alces alces ) in New York State and investigated factors including parasite infection, nutritional limitation, and thermal stress influencing mortality risk in calf moose. We observed high rates of annual survival (0.81–0.92) in adult ( n = 25) and calf ( n = 27) moose monitored 2015–2018 and 2022–2024, respectively. The majority of cause-specific mortality was attributed to disease induced by giant liver fluke ( Fascioloides magna ; 75% in adults, 67% in calves). Calf mortality risk increased by 72% for every unit increase in giant liver fluke infection risk, measured as cumulative monthly proportion of wetlands used by moose, and decreased by 16% with each additional unit of nutritional energy available. The combination of flukes, coinfecting parasites, and available nutritional energy is important to calf survival in this population, highlighting the importance of managing multiple stressors for species conservation, although the effects are hard to disentangle given the high rates of survival observed. Identifying causes of mortality and mechanisms underlying increased mortality risk contributes to the continued conservation of moose in fluctuating populations and highlights the importance of managing parasite-induced disease.

New York↗

USGS2025

Development of high-throughput genomic resources to inform white-tailed deer population and disease management

White-tailed deer ( Odocoileus virginianus ) are the most abundant and widespread cervid in North America. Genetic data are used as a tool to monitor populations and make management decisions for this game species. However, the development and use of genomic tools that can generate a set of markers suitable for longitudinal genomic data collection, whether for management purposes or to study the demographic and evolutionary processes of widely distributed species, have been challenging. This is mainly due to the cost required to fully implement and interpret the data produced. Here, we generated whole genome resequencing data for 44 free-ranging deer from three regions in their central and eastern North American range and identified over 89 million single nucleotide polymorphisms (SNPs). We used a subset of these SNPs to develop two nested SNP tools, a high-density array (702,183 SNPs) and a medium-density array (72,723 SNPs) to support deer and chronic wasting disease (CWD) management and research. SNPs were selected to ensure an even distribution across scaffolds of the reference genome and include SNPs associated with CWD susceptibility. Using genotyping results for 469 deer from 15 states in the US and Mexico generated by the high-density array and 1335 deer from 18 states generated by the medium-density array, we assessed genotyping success across different populations and explored some insights into population structure. These genomic tools offer a standard set of markers that will enable researchers and managers to address important questions related to white-tailed deer and CWD management. Our SNP arrays also offer the opportunity to examine aspects of white-tailed deer ecology and evolutionary history that were previously difficult to address.

Molecular Ecology Resources↗

USGS2025

Strategic planning of prevention and surveillance for emerging diseases and invasive species

Emerging infectious diseases and biological invasions pose increasing threats to public and ecosystems health. Proactive measures—such as prevention and surveillance taken before initial detection of the pathogen or species—are essential to ensure minimal spread prior to first detection. We developed an optimization model to determine where, when, and how much effort should be allocated to prevention versus surveillance. The model accounts for imperfect detection, system dynamics, spatial heterogeneity in risk and costs and is scalable to large landscapes. We found that the most cost-effective strategy is to maintain the prevention and surveillance efforts at stable equilibrium for the majority of the time, with deviations occurring only initially to steer the system toward the equilibrium. The equilibrium effort is jointly determined by the introduction risk, management costs, and total budget. Application of this model to chronic wasting disease in New York State suggests that the optimal strategy could reduce the cumulative disease cases before initial detection by an average of 22% compared to current practice. The optimal surveillance strategy could detect the disease on average over 8 mo earlier than the current strategy.

PNAS↗

USGS2025

Parasite‐mediated competition limits dominant cervid competitor

Species interactions structure ecological communities through direct and indirect pathways with ecosystem-wide implications. Despite mounting interest in the importance of indirect interactions, empirical evidence remains limited. Here, we demonstrate the critical role of parasite-mediated competition in driving community outcomes in a multi-species system of conservation and management concern. We leveraged 2 years of detection/non-detection data of moose ( Alces alces ) and white-tailed deer ( Odocoileus virginianus ) and parasite loads in faecal samples within a hierarchical abundance-mediated interaction model to test hypotheses regarding interactions between these cervids and their shared parasites ( Parelaphostrongylus tenuis , Fascioloides magna ). We demonstrate that moose occupancy was limited by parasite-mediated competition, with no evidence of population-level effects of direct competitive interactions between moose and white-tailed deer. Such evidence of the importance of indirect interactions and resulting community outcomes is critical for species conservation and managing range contractions due to increasing pressures from habitat loss, disease and climate change.

New York↗

USGS2025

Highly pathogenic avian influenza virus exposure and infection in free-ranging bobcats (Lynx rufus) in New York, USA

Highly pathogenic H5N1 influenza A virus (HP H5N1) cases in wild mammals have been increasing globally. Carnivora has been the most affected mammal order; however, the extent of morbidity and mortality in carnivores exposed to HP H5N1 remains undefined. We assessed the presence of antibodies to H5 and N1 in the sera of 16 live-captured bobcats ( Lynx rufus ) in New York State, USA; reported on postcapture outcomes of HP H5N1-exposed bobcats; and reported on a case of HP H5N1 infection in one bobcat. In 2024, 4/16 bobcats (25%) tested positive for antibodies to H5 and N1. Two bobcats were confirmed alive as of November 2024 according to GPS data; the other two were alive as of June 2024, when their GPS collars stopped communicating. Another bobcat, which was negative for HP H5N1 antibodies at capture, died from HP H5N1 infection within 5 wks of capture. Our results provide evidence of bobcats both surviving and succumbing to HP H5N1 infection and highlight the importance of focused health studies paired with monitoring data to better understand exposure, infection, and outcomes for novel pathogens and species.

New York↗

USGS2024

Large-scale assessment of genetic structure to assess risk of populations of a large herbivore to disease

Chronic wasting disease (CWD) can spread among cervids by direct and indirect transmission, the former being more likely in emerging areas. Identifying subpopulations allows the delineation of focal areas to target for intervention. We aimed to assess the population structure of white-tailed deer ( Odocoileus virginianus ) in the northeastern United States at a regional scale to inform managers regarding gene flow throughout the region. We genotyped 10 microsatellites in 5701 wild deer samples from Maryland, New York, Ohio, Pennsylvania, and Virginia. We evaluated the distribution of genetic variability through spatial principal component analysis and inferred genetic structure using non-spatial and spatial Bayesian clustering algorithms (BCAs). We simulated populations representing each inferred wild cluster, wild deer in each state and each physiographic province, total wild population, and a captive population. We conducted genetic assignment tests using these potential sources, calculating the probability of samples being correctly assigned to their origin. Non-spatial BCA identified two clusters across the region, while spatial BCA suggested a maximum of nine clusters. Assignment tests correctly placed deer into captive or wild origin in most cases (94%), as previously reported, but performance varied when assigning wild deer to more specific origins. Assignments to clusters inferred via non-spatial BCA performed well, but efficiency was greatly reduced when assigning samples to clusters inferred via spatial BCA. Differences between spatial BCA clusters are not strong enough to make assignment tests a reliable method for inferring the geographic origin of deer using 10 microsatellites. However, the genetic distinction between clusters may indicate natural and anthropogenic barriers of interest for management.

Maryland, New York, Ohio, Pennsylvania, West Virgi↗

USGS2024

Predicting the odds of chronic wasting disease with Habitat Risk software

Chronic wasting disease (CWD) is a transmissible spongiform encephalopathy that was first detected in captive cervids in Colorado, United States (US) in 1967, but has since spread into free-ranging white-tailed deer ( Odocoileus virginianus ) across the US and Canada as well as to Scandinavia and South Korea. In some areas, the disease is considered endemic in wild deer populations, and governmental wildlife agencies have employed epidemiological models to understand long-term environmental risk. However, continued rapid spread of CWD into new regions of the continent has underscored the need for extension of these models into broader tools applicable for wide use by wildlife agencies. Additionally, efforts to semi-automate models will facilitate access of technical scientific methods to broader users. We introduce software (Habitat Risk) designed to link a previously published epidemiological model with spatially referenced environmental and disease testing data to enable agency personnel to make up-to-date, localized, data-driven predictions regarding the odds of CWD detection in surrounding areas after an outbreak is discovered. Habitat Risk requires pre-processing publicly available environmental datasets and standardization of disease testing (surveillance) data, after which an autonomous computational workflow terminates in a user interface that displays an interactive map of disease risk. We demonstrated the use of the Habitat Risk software with surveillance data of white-tailed deer from Tennessee, USA.

Tennessee↗

USGS2022

Informing surveillance through the characterization of outbreak potential of chronic wasting disease in white-tailed deer

Understanding the role that an environmental prion reservoir plays in the outbreak dynamics of chronic wasting disease (CWD) in free ranging white-tailed deer ( Odocoileus virginianus ) is critical for the allocation of disease surveillance resources by state and provincial wildlife agencies. We hypothesized that demographic, ecological, and epidemiological configurations naturally attenuate epidemic risk despite the introduction of infectious prions into a susceptible population of deer, but the magnitude of infectious prions in the environmental prion reservoir complicate outbreak expectations. We developed a Susceptible-Latent-Exposed-Infective (SLEI) compartment model to represent the dynamics of CWD epidemics in free-ranging white-tailed deer, then used the basic reproductive ratio ( R 0 "> R0 ) to pinpoint counties under which pathogenic introduction (transport of infectious bodily fluids, tissues, and carcasses through natural or anthropogenic means) naturally produced (or failed to produce) an epidemic. We found that the outlook for an epidemic hinged on transmission rates, the magnitude of environmental contamination, and system type (density-, frequency-, or density/frequency-dependent). CWD can persistently infect individuals living in a contaminated environment even if direct transmission is insufficient to sustain circulation. Theoretical results show that transmission of CWD cannot be exclusively density dependent, and must behave as either a mix between frequency and density dependent, or strictly frequency dependent. While the compartment model is a simplistic representation of reality and did not contain many complicating biological considerations, it was immediately useful in hypothesis generation, motivating the collection of additional data for use in more biologically detailed models, and in the allocation of finite surveillance resources to place emphasis on data collection in areas where an introduction of infectious prions is comparatively more likely to result in an epidemic.

Ecological Modelling↗

USGS2021

Sentinel coyote pathogen survey to assess declining black-footed ferret (Mustela nigripes) population in South Dakota, USA

As part of the national recovery effort, endangered black-footed ferrets ( Mustela nigripes ) were reintroduced to the Cheyenne River Sioux Reservation in South Dakota, US in 2000. Despite an encouraging start, numbers of ferrets at the site have declined. In an effort to determine possible causes of the population decline, we undertook a pathogen survey in 2012 to detect exposure to West Nile virus (WNV), canine distemper virus (CDV), plague ( Yersinia pestis ), tularemia ( Francisella tularensis ), and heartworm ( Dirofilaria immitis ) using coyotes ( Canis latrans ) as a sentinel animal. The highest seroprevalence was for WNV with 71% (20/28) of coyotes testing antibody-positive. Seroprevalence of CDV and plague were lower, 27% and 13%, respectively. No evidence of active infection with tularemia or heartworm was seen in the coyotes sampled. As this study did not sample black-footed ferrets themselves, the definitive cause for the decline of this population cannot be determined. However, the presence of coyotes seropositive for two diseases, plague and CDV, lethal to black-footed ferrets, indicated the potential for exposure and infection. The high seroprevalence of WNV in the coyotes indicated a wide exposure to the virus; therefore, exposure of black-footed ferrets to the virus is also likely. Due to the ability of WNV to cause fatal disease in other species, studies may be useful to elucidate the impact that WNV could have on the success of reintroduced black-footed ferrets as well as factors influencing the spread and incidence of the disease in a prairie ecosystem.

South Dakota↗

USGS2020

Canine distemper virus in the sea otter population (Enhydra lutris) in Washington State, USA

Before 2001, all serosurveys for morbilliviruses in sea otters ( Enhydra lutris ) in California, Washington, and Alaska, USA, documented a 0% seroprevalence. The first published serologic detections of morbillivirus in sea otters occurred in 2001–02 in live-captured Washington sea otters, with a documented 80% seroprevalence. We conducted a retrospective study of sea otter cases from 1989 to 2010 compiled at the US Geological Survey, National Wildlife Health Center to identify cases of morbilliviral disease in Washington sea otters and to characterize the disease using immunohistochemistry, reverse transcription (RT)-PCR, genetic sequencing, virus isolation, and serology. We identified six cases of morbilliviral disease and 12 cases of morbilliviral infection in this population of sea otters during 2000–10. Significant histologic findings included inflammation in the white and gray matter of the brain characterized by lymphoplasmacytic perivascular cuffing, neuronal necrosis, and satellitosis in gray matter and by spongiosis, myelin degeneration, spheroids, and gemistocytes in white matter. Intranuclear and intracytoplasmic viral inclusion bodies were found in neurons, Purkinje cells, and glia. Immunohistochemistry for canine distemper virus (CDV) showed positive staining in neurons, glial cells, and cell processes. A pan-morbillivirus RT-PCR with subsequent restriction endonuclease digestion or sequencing identified CDV. Virus isolation was not successful. Two sea otters with morbilliviral encephalitis showed greater antibody titers to CDV than phocine distemper virus. Histologic changes were confined to the central nervous system and resembled neurologic canine distemper in domestic dogs. Cases of sea otters with morbilliviral infection without histologic changes could represent early infections or incompletely cleared sublethal infections. We found that morbillivirus was present in the Washington sea otter population as early as 2000, and we provide a description of the pathology of canine distemper in sea otters.

Washington↗

USGS2018

Chronic wasting disease detection and mortality sources in semi-protected deer population

Surveillance for wildlife diseases is essential for assessing population dynamics of ungulates, especially in free-ranging populations where infected animals are difficult to sample. Chronic wasting disease (CWD) is an emerging infectious disease of concern because of the potential for substantial negative effects on populations of cervids. Variability in the likelihood that CWD is detected could invalidate traditional estimators for prevalence. In some instances, deer located after death cannot be tested for infectious diseases, including CWD, because of lack of availability or condition of appropriate tissues. We used various methods to detect infectious diseases that could cause mortality for deer Odocoileus spp. residing in Wind Cave National Park, South Dakota, USA, and we report survival estimates for animals in this population. We included 34 monthly encounters of deer resightings and 67 mortalities. We tested live deer by tonsillar biopsy for CWD and estimated pooled prevalence (mean ± SE) at 5.6 ± 3.0% over the three-year study. Live deer potentially had exposure to several infectious diseases, including bluetongue, epizootic hemorrhagic disease, bovine viral diarrhea, West Nile virus, and malignant catarrhal fever, but no apparent morbidity or mortality from those diseases. We tested survival and influence of covariates, including age and sex, using known-fate analysis in Program MARK. Those data best supported a model with time-invariant encounter probability and an annual survival of 72.8%. Even without direct pressure from hunting within the park, average life expectancy in this population was 3.2 years. Only 68% of mortalities contained sufficient material for CWD sampling (because of predation and scavenger activity) and >42% of these were CWD-positive. These findings underscore the possible biases in postmortem surveillance estimates of disease prevalence because of potential for subclinical infected animals to be removed by predators and not tested.

South Dakota↗

USGS2018

Refining aging criteria for northern sea otters in Washington State

Measurement of skull ossification patterns is a standard method for aging various mammalian species and has been used to age sea otters Enhydra lutris from Russia, California, and Alaska. Cementum annuli counts have also been verified as an accurate aging method for sea otters in Alaska. In this study, we compared cementum annuli count results and skull ossification patterns as methods for aging the northern sea otter, E. l. kenyoni, in Washington State. We found significant agreement between the two methods, suggesting that either method could be used to age sea otters in Washington. We found that ossification of the squamosal–jugal suture at the ventral glenoid fossa can be used to differentiate male subadults from adults. To assist field biologists or others without access to cementum annuli or skull ossification analysis techniques, we analyzed a suite of morphologic, physiologic, and developmental characteristics to assess whether a set of these more easily accessible parameters could also predict age class. We identified tooth condition score, evidence of reproductive activity in females, and tooth eruption pattern as the most useful criteria for classifying sea otters in Washington. We created a simple decision tree based on characteristics accessible in the field or at necropsy, which can be used to reliably predict age class of Washington sea otters as determined by cementum annuli. These techniques offer field biologists and marine mammal stranding networks a replicable, cost-conscious methodology to gather useful biological information from sea otters.

Washington↗

USGS2018

Mortality trends in northern sea otters (Enhydra lutris kenyoni) collected from the coasts of Washington and Oregon (2002–15)

During 2002−15 we examined the causes of mortality in a population of northern sea otters ( Enhydra lutris kenyoni ). Beachcast sea otters were collected primarily from the coast of Washington. Although there are no permanent sea otter residents in Oregon, several beachcast otters were collected from the Oregon coast. Infectious diseases were the primary cause of death (56%) for otters we examined. Sarcocystosis was the leading infectious cause of death (54%) and was observed throughout the study period. Some infectious diseases, such as morbilliviral encephalitis and leptospirosis, were documented for a limited number of years and then not detected again despite continued testing for these pathogens in necropsied animals. Trauma was the second most common cause of death (14%) during the study period. The continued stable growth of the Washington population of otters suggests they are able to tolerate current mortality rates.

Oregon, Washington↗

USGS2016

Snake fungal disease: An emerging threat to wild snakes

Since 2006, there has been a marked increase in the number of reports of severe and often fatal fungal skin infections in wild snakes in the eastern USA. The emerging condition, referred to as snake fungal disease (SFD), was initially documented in rattlesnakes, where the infections were believed to pose a risk to the viability of affected populations. The disease is caused by Ophidiomyces ophiodiicola , a fungus recently split from a complex of fungi long referred to as the Chrysosporium anamorph of Nannizziopsis vriesii (CANV). Here we review the current state of knowledge about O. ophiodiicola and SFD. In addition, we provide original findings which demonstrate that O. ophiodiicola is widely distributed in eastern North America, has a broad host range, is the predominant cause of fungal skin infections in wild snakes and often causes mild infections in snakes emerging from hibernation. This new information, together with what is already available in the scientific literature, advances our knowledge of the cause, pathogenesis and ecology of SFD. However, additional research is necessary to elucidate the factors driving the emergence of this disease and develop strategies to mitigate its impacts.

Philosophical Transactions of the Royal Society B:↗

USGS2016

Bald Eagle nestling mortality associated with Argas radiatus and Argas ricei tick infestation and successful management with nest removal in Arizona, USA

Eight Bald Eagle ( Haliaeetus leucocephalus ) nestlings heavily infested with larval ticks were found in or under a nest near the confluence of the Verde and Salt rivers in Arizona in 2009-11. The 8-12-wk-old nestlings were slow to respond to stimuli and exhibited generalized muscle weakness or paresis of the pelvic limbs. Numerous cutaneous and subcutaneous hemorrhages were associated with sites of tick attachment. Ticks were identified as Argas radiatus and Argas ricei . Treatment with acaricides and infection with West Nile virus (WNV) may have confounded the clinical presentation in 2009 and 2010. However, WNV-negative birds exhibited similar signs in 2011. One nestling recovered from paresis within 36 h after the removal of all adult and larval ticks (>350) and was released within 3 wk. The signs present in the heavily infested Bald Eagle nestlings resembled signs associated with tick paralysis, a neurotoxin-mediated paralytic syndrome described in mammals, reptiles, and wild birds (though not eagles). Removal of the infested nest and construction of a nest platform in a different tree was necessary to break the cycle of infection. The original nesting pair constructed a new nest on the man-made platform and successfully fledged two Bald Eagles in 2012.

Arizona↗

USGS2014

Surveillance and monitoring of white-tailed deer for chronic wasting disease in the northeastern United States

Chronic wasting disease (CWD) is a prion disease that affects both wild and captive cervid populations. In the past 45 y, CWD has spread from northern Colorado to all bordering states, as well as the midwestern United States (Midwest) and northeastern United States (Northeast), Canada, and South Korea. Because CWD is a relatively new issue for wildlife management agencies in the Northeast, we surveyed a representative (e.g., cervid biologist, wildlife veterinarian) from 14 states to gain a better understanding of state-specific surveillance measures. Between 2002 and 2012, New York (37,093) and Pennsylvania (35,324) tested the greatest number of harvested white-tailed deer Odocoileus virginianus in the Northeast. Additionally, the 14 states surveyed have tested 121,730 harvested deer, or approximately 15,216/y, since CWD was first detected in 2005. The most common tissues used by agencies in the Northeast for testing were retropharyngeal lymph nodes, which have been determined to be the most reliable in detecting CWD in cervids. Understanding CWD surveillance efforts at a regional scale can help to provide guidance for the development of new surveillance plans or the improvement of existing ones. Furthermore, collaborations among state and regional agencies in the Northeast may attempt to identify deficiencies in surveillance by state or subregion.

Connecticut, Delaware, Maine, Maryland, Massachuse↗

USGS2013

A review of episodes of zinc phosphide toxicosis in wild geese (Branta spp.) in Oregon (2004−2011)

Epizootic mortality in several geese species, including cackling geese (Branta hutchinsii) and Canada geese (Branta canadensis), has been recognized in the Willamette Valley of Oregon for over a decade. Birds are generally found dead on a body of water or are occasionally observed displaying neurologic clinical signs such as an inability to raise or control the head prior to death. Investigation of these epizootic mortality events has revealed the etiology to be accidental poisoning with the rodenticide zinc phosphide (Zn 3 P 2 ). Gross and histologic changes are restricted to acute pulmonary congestion and edema, sometimes accompanied by distension of the upper alimentary tract by fresh grass. Geese are unusually susceptible to this pesticide; when combined with an epidemiologic confluence of depredation of specific agricultural crops by rodents and seasonal avian migration pathways, epizootic toxicosis may occur. Diagnosis requires a high index of suspicion, appropriate sample collection and handling, plus specific test calibration for this toxicant. Interagency cooperation, education of farmers regarding pesticide use, and enforcement of regulations has been successful in greatly decreasing these mortality events since 2009.

Oregon↗