Geology topics

Kathi Jo Jankowski

Publications and source records attributed to Kathi Jo Jankowski.

At least 19 recordsLinked to original sources

USGS2026

Seasonal environmental conditions and river morphology shape summer phytoplankton communities

1. Phytoplankton form the base of large river food webs but there are limited studies on the nature and drivers of communities over longer time scales. Further, climate change is projected to favor taxa associated with harmful algal blooms, but our knowledge of the timing, locations, and drivers of cyanobacteria in rivers lags that of lakes and marine environments. 2. We used a summer phytoplankton community dataset collected from 2010-2020 across main channel, side channel and backwater areas in the La Grange reach of the Illinois River to assess: 1) How much do summer phytoplankton communities across diverse aquatic areas within a large river vary from year to year?, 2) What environmental conditions are associated with that variation?, and 3) Do cyanobacteria respond differently than the full phytoplankton community? 3. We found greater differences in phytoplankton communities across years than among aquatic areas. Further, we showed that annual variation in phytoplankton communities was synchronous among taxa in the same aquatic area, rather than specific to each taxonomic group or taxa-area combination. After accounting for this spatial variation in annual dynamics, phytoplankton reflected river conditions across seasons, responding positively to summer total phosphorus and invasive carp abundance and negatively to winter discharge and spring silica to nitrogen ratio. Annual variation in cyanobacteria was similarly distinct among main channel, side channel and backwater areas but was best explained by the ratio of summer air temperature to discharge, representing conditions that favored growth over transport. 4. These results show that annual variation in summer phytoplankton and cyanobacterial communities both reflected the spatial diversity of the river landscape and responded to conditions that occurred at different spatial and temporal scales. Further, in this highly modified river basin, we showed that a mix of anthropogenic pressures including eutrophication, invasive species, and potential changes to winter and spring conditions affected the phytoplankton communities present in the summer. Thus, when evaluating long-term change and the potential for harmful algal blooms in rivers it is important to consider spatial diversity of phytoplankton communities, how their sensitivity to environmental change may vary across the river landscape, and the suite of human modifications acting on those communities.

Illinois↗

USGS2026

Thinking outside the rocks: Subsurface water storage, topography, and land cover are key modulators of large-scale riverine dissolved silicon dynamics

Riverine dissolved silicon (DSi) dynamics reflect integrated geologic, hydrologic, climatic, and ecological controls. We compiled annual DSi data for 337 rivers across four continents and trained interpretable machine-learning models to predict concentrations and yields from 28 watershed variables. Both models reproduced testing data ( R 2 = 0.85 for concentration and 0.96 for yield) and withheld-site validation ( R 2 = 0.91 and 0.93). Lithology, especially volcanic rock fraction, strongly controlled DSi while subsurface storage, topography, and land cover further shaped DSi dynamics. DSi concentrations and yields exhibited nonlinear responses to basin slope, recession-curve slope, proportion of open-water cover, and nutrient availability. Concentrations showed sharper threshold responses to hydrologic and biotic variables, whereas yields varied more gradually with climate and lithology. These results provide a framework for forecasting DSi under land cover and climate change and for embedding realistic, nonlinear processes in mechanistic models.

Geophysical Research Letters↗

USGS2025

GlASS - Global Aggregation of Stream Silica

Riverine silicon (Si) plays a vital role in governing primary production, water quality, and carbon cycling. Climate and land cover change have altered how dissolved Si (DSi) is processed on land, transported to rivers, and cycled through aquatic ecosystems. The Global Aggregation of Stream Silica (GlASS) database was constructed to assess changes in river Si concentrations and fluxes, their relationship to other nutrients (nitrogen (N) and phosphorus (P)), and to evaluate mechanisms driving the availability of Si. GlASS includes concentrations of DSi, dissolved inorganic N (NO 3 , NO x , and NH 4 ), and dissolved inorganic P (as soluble reactive P or PO 4 -P) at daily to quarterly time steps from 1963 to 2024; daily discharge; and watershed characteristics for 421 rivers spanning eight climate zones. Original data sources are cited, data quality assurance workflows are public, and input files to a common load model are provided. GlASS offers critical data to address questions about patterns, controls, and trajectories of global river Si biogeochemistry and stoichiometry.

Scientific Data↗

USGS2025

Variation and controls of sediment oxygen demand in backwater lakes of the Upper Mississippi River during winter

Many ecological processes affect the availability of winter dissolved oxygen (DO) concentrations in rivers, a key feature of overwintering fish habitat. Sediment oxygen demand (SOD) contributes to DO depletion, particularly during ice-covered periods, and may cause hypoxic conditions in backwater lakes, affecting the availability of suitable overwintering habitat. Understanding the drivers of SOD on habitat conditions during winter is critical for the management of the Upper Mississippi River System (UMRS). We measured SOD rates in three different habitat types (shallow, non-vegetated; deep, non-vegetated; and vegetated) within 12 backwater lakes in Pools 4, Pool 8, and Pool 13 of the UMRS in January and February 2022. Sediment physicochemical characteristics were measured to identify potential drivers of winter SOD rates. Measured SOD rates ranged from 0.04–0.44 g O 2 /(m 2 d) at in situ temperatures, and 0.14–1.46 g O 2 /(m 2 d) when corrected to 20°C. There were no statistically significant relations between in situ SOD and most sediment characteristics. SOD was positively associated with aquatic vegetation presence and negatively associated with sediment pH, water depth, flow velocity, and ice depth. SOD was typically higher at vegetated sites with lower flow velocity, with four of the five highest SOD rates measured at vegetated sites. Vegetation presence, depth, and flow velocity played greater roles in controlling SOD rates than sediment characteristics. Additionally, DO concentrations near the sediment–water interface at deep sites (> 1.5 m) were much lower than DO concentrations 0.2 m under the water surface, indicating that SOD was influencing DO concentrations and may be affecting overwintering habitat in backwater lakes.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗

USGS2025

Climate and connectivity mediate overwintering habitat suitability for centrarchids in a large floodplain river network

Availability of suitable overwintering habitat is crucial for the survival of centrarchids in large floodplain rivers. However, there remains uncertainty in the spatiotemporal drivers of suitable conditions. We paired hydrogeomorphic characteristics with environmental data from 1994 to 2018 in individual lentic areas to (1) assess overwintering habitat availability throughout the Upper Mississippi River System using existing habitat suitability indices (HSIs) and (2) explore potential drivers of overall habitat suitability (HSI O ) and its components (dissolved oxygen, temperature, and flow). We found that flow velocities that exceeded suitable thresholds were independently responsible for 53% of nonsuitable habitats, and connectivity with lotic channels and river discharge increased velocity within lentic habitats. Additionally, colder winter conditions reduced water temperature, reducing availability of highly suitable habitat. Our results indicate that although warmer winters could increase the availability of highly suitable habitat for centrarchids, changes in flow regimes could lead to more connected areas becoming unsuitable. Our results provide critical information on factors that can be prioritized to manage centrarchid habitat, which is especially important in the context of uncertain future climate.

upper Mississippi River↗

USGS2024

Climate, hydrology, and nutrients control the seasonality of Si concentrations in rivers

The seasonal behavior of fluvial dissolved silica (DSi) concentrations, termed DSi regime , mediates the timing of DSi delivery to downstream waters and thus governs river biogeochemical function and aquatic community condition. Previous work identified five distinct DSi regimes across rivers spanning the Northern Hemisphere, with many rivers exhibiting multiple DSi regimes over time. Several potential drivers of DSi regime behavior have been identified at small scales, including climate, land cover, and lithology, and yet the large-scale spatiotemporal controls on DSi regimes have not been identified. We evaluate the role of environmental variables on the behavior of DSi regimes in nearly 200 rivers across the Northern Hemisphere using random forest models. Our models aim to elucidate the controls that give rise to (a) average DSi regime behavior, (b) interannual variability in DSi regime behavior (i.e., Annual DSi regime), and (c) controls on DSi regime shape (i.e., minimum and maximum DSi concentrations). Average DSi regime behavior across the period of record was classified accurately 59% of the time, whereas Annual DSi regime behavior was classified accurately 80% of the time. Climate and primary productivity variables were important in predicting Average DSi regime behavior, whereas climate and hydrologic variables were important in predicting Annual DSi regime behavior. Median nitrogen and phosphorus concentrations were important drivers of minimum and maximum DSi concentrations, indicating that these macronutrients may be important for seasonal DSi drawdown and rebound. Our findings demonstrate that fluctuations in climate, hydrology, and nutrient availability of rivers shape the temporal availability of fluvial DSi.

Journal of Geophysical Research Biogeosciences↗

USGS2024

U.S. Geological Survey Mississippi River Science Forum—Summary of data and science needs and next steps

The U.S. Geological Survey hosted a Mississippi River Science Forum with Federal agencies; Tribal, State, and local governments located in States that border the Mississippi River; academia; and other interested stakeholders. The purpose of the forum was to share current (2023) science; identify data gaps and areas of concern; and to prioritize next steps needed to advance the goals of improving water quality, restoring habitat and natural systems, improving navigation, eliminating aquatic invasive species, and building local resilience to natural disasters along the Mississippi River. The forum was a directive for the U.S. Geological Survey in the Consolidated Appropriations Act of 2022 (Public Law 117—103, 136 Stat. 49). Participants and stakeholders that attended the Mississippi River Science Forum indicated the following. A Mississippi River Science Committee could bring together the voices of all stakeholders, including Federal agencies; State, local, and Tribal governments; academia; nongovernmental organizations; business and industry; and other interested parties. This committee would also work with (but not replace) Mississippi River Basin entities already in place and establish effective communication to identify and address Basin-wide management needs and to develop holistic solutions for those needs. A Mississippi River science plan could expand on the science and data gaps identified by the Forum. This plan could guide data collection and help resource managers develop and implement restoration initiatives within the Basin, recognizing that addressing these needs will require substantial resources. The science committee, working with other entities in the basin, should develop data standards for the Mississippi River Basin that allow stakeholders to utilize comparable data to address their needs. These standards would include data findability, accessibility, interoperability, and reusability. This report highlights data gaps and areas of concern discussed during the forum, and it identifies needs to advance the goals of improving water quality, restoring habitat and natural systems, improving navigation, eliminating aquatic invasive species, and building local resilience to natural disasters with specific emphasis on data collection and measurement, and scientific investigation. The report also summarizes stakeholder input and feedback and outlines next steps identified by forum participants.

Open-File Report↗

USGS2024

The where and why of large wood occurrence in the Upper Mississippi and Illinois Rivers

Large wood (LW) plays important geomorphic and ecological roles in rivers and is widely used as a restoration tool. Changes to floodplain land use and historical removal have altered wood dynamics in fluvial systems globally. We know little about the distribution and dynamics of LW in great rivers (approximately >10 5 km 2 ) like the Upper Mississippi and Illinois Rivers despite its ecosystem importance and use in restoration projects. We assessed LW occurrence data collected by the fisheries component of the Upper Mississippi River Restoration Program's Long Term Resource Monitoring element. We analysed 25 years of data collected across six reaches of the Upper Mississippi and Illinois Rivers that represented contrasting physiographic settings, and across four aquatic area types comprising gradients of hydrology, connectivity and geomorphology. We tested hypotheses on drivers of LW occurrence using generalised linear mixed effects models, where occurrence was predicted by reach- and local-scale environmental variables. Occurrence varied significantly across reaches and aquatic area types. In general, wood occurred more frequently upriver and in side channels compared to other aquatic areas. Large wood was most strongly predicted systemically by reach identity but not local-scale variables, underscoring the importance of broad-scale physiographic gradients in defining hydrogeomorphic processes. Floodplain forests and shoreline revetment were consistently important predictors across reaches. Our findings show that the spatial variability of LW occurrence reflects the physical variability of the Upper Mississippi and Illinois Rivers. They also reveal the value in using geomorphic classifications as frameworks for understanding physical processes like LW dynamics because of their ability to contextualise site-scale conditions. The baseline understanding of LW abundance across different hydrogeomorphic gradients and scales presented here can give insight into how to more effectively target restoration efforts in great rivers and contribute to a broader understanding of LW dynamics where such studies have been lacking.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗

USGS2024

Intrinsic and extrinsic regulation of water clarity in a large, floodplain-river ecosystem

Ecosystem processes in rivers are thought to be controlled more by extrinsic than intrinsic factors, that is, the result of processes that occur upstream or within their watersheds. However, large floodplain rivers have a diverse assemblage of aquatic areas spanning gradients of connectivity with the main channel and internal controls may at times regulate long-term dynamics. When and where internal controls are important has not been widely explored in rivers. The Upper Mississippi River System (UMRS) provides a unique opportunity to assess regulation of ecosystem processes in a large floodplain river as water clarity has increased in several reaches over the last two decades. To better understand when and where intrinsic variables (for example , aquatic vegetation and common carp) and extrinsic variables (for example , upstream main channel total suspended solids (TSS) concentration and discharge) regulate water clarity, we describe 24-year trends of TSS in six study reaches of the UMRS. We evaluated the degree to which trends were shared across aquatic areas within each study reach and identified potential drivers of long-term TSS dynamics. Results varied across and within UMRS reaches, but common carp abundance was the strongest predictor in nearly all study reaches. Several models indicated associations with both intrinsic and extrinsic factors, and the marginal model r 2 values (0.26–0.61) suggest that additional environmental factors may have influenced water clarity. Knowledge of the degree to which intrinsic and extrinsic processes regulate water clarity is important for understanding and managing large, floodplain rivers worldwide.

Ecosystems↗

USGS2024

Establishing fluvial silicon regimes and their stability across the Northern Hemisphere

Fluvial silicon (Si) plays a critical role in controlling primary production, water quality, and carbon sequestration through supporting freshwater and marine diatom communities. Geological, biogeochemical, and hydrological processes, as well as climate and land use, dictate the amount of Si exported by streams. Understanding Si regimes—the seasonal patterns of Si concentrations—can help identify processes driving Si export. We analyzed Si concentrations from over 200 stream sites across the Northern Hemisphere to establish distinct Si regimes and evaluated how often sites moved among regimes over their period of record. We observed five distinct regimes across diverse stream sites, with nearly 60% of sites exhibiting multiple regime types over time. Our results indicate greater spatial and interannual variability in Si seasonality than previously recognized and highlight the need to characterize the watershed and climate variables that affect Si cycling across diverse ecosystems.

Limnology and Oceanography Letters↗

USGS2024

Reduction of large vessel traffic improves water quality and alters fish habitat-use throughout a large river

Rivers are increasingly used as superhighways for the continental-scale transportation of freight goods, but the ecological impact of large vessel traffic on river ecosystems is difficult to study. Recently, the temporary maintenance closure of lock and dam systems on the Illinois Waterway (USA) brought commercial vessel traffic to a halt along the river's length, offering a rare opportunity to study the response of the ecosystem before, during, and after an extended pause of this persistent anthropogenic disturbance. We observed improvements in main- and side-channel water quality and a redistribution of fish habitat-use during a months-long, near-complete reduction of large vessel traffic. Over 3600 water quality and 1300 fish community samples indicate that large vessel traffic reduction coincided with a 33 % reduction in turbidity as well as increased use of sampling strata near vessel navigation corridors by sound-sensitive and rheophilic fishes. Gizzard shad ( Dorosoma cepedianum ), the most abundant species in the system, also expanded their use of these ‘impact’ areas. Though inland waterway transport is an economically- and climate-friendly alternative to trucking and rail for the shipment of freight, our data suggest that intense vessel traffic may have profound physical and biological impacts across a large river. Monitoring and mitigation of ecological impacts of the ongoing expansion of inland waterway transport around the world will be critical to balancing large rivers as both useful navigation corridors and functional ecosystems.

Illinois↗

USGS2023

Long-term changes in concentrations and yield of riverine dissolved silicon from the poles to the tropics

Riverine exports of silicon (Si) influence global carbon cycling through the growth of marine diatoms, which account for ∼25% of global primary production. Climate change will likely alter river Si exports in biome-specific ways due to interacting shifts in chemical weathering rates, hydrologic connectivity, and metabolic processes in aquatic and terrestrial systems. Nonetheless, factors driving long-term changes in Si exports remain unexplored at local, regional, and global scales. We evaluated how concentrations and yields of dissolved Si (DSi) changed over the last several decades of rapid climate warming using long-term data sets from 60 rivers and streams spanning the globe (e.g., Antarctic, tropical, temperate, boreal, alpine, Arctic systems). We show that widespread changes in river DSi concentration and yield have occurred, with the most substantial shifts occurring in alpine and polar regions. The magnitude and direction of trends varied within and among biomes, were most strongly associated with differences in land cover, and were often independent of changes in river discharge. These findings indicate that there are likely diverse mechanisms driving change in river Si biogeochemistry that span the land-water interface, which may include glacial melt, changes in terrestrial vegetation, and river productivity. Finally, trends were often stronger in months outside of the growing season, particularly in temperate and boreal systems, demonstrating a potentially important role of shifting seasonality for the flux of Si from rivers. Our results have implications for the timing and magnitude of silica processing in rivers and its delivery to global oceans.

Global Biogeochemical Cycles↗

USGS2023

Intraspecific trait variability facilitates tree species persistence along riparian forest edges in Southern Amazonia

Tropical forest fragmentation from agricultural expansion alters the microclimatic conditions of the remaining forests, with effects on vegetation structure and function. However, little is known about how the functional trait variability within and among tree species in fragmented landscapes influence and facilitate species’ persistence in these new environmental conditions. Here, we assessed potential changes in tree species’ functional traits in riparian forests within six riparian forests in cropland catchments (Cropland) and four riparian forests in forested catchments (Forest) in southern Amazonia. We sampled 12 common functional traits of 123 species across all sites: 64 common to both croplands and forests, 33 restricted to croplands, and 26 restricted to forests. We found that forest-restricted species had leaves that were thinner, larger, and with higher phosphorus (P) content, compared to cropland-restricted ones. Tree species common to both environments showed higher intraspecific variability in functional traits, with leaf thickness and leaf P concentration varying the most. Species turnover contributed more to differences between forest and cropland environments only for the stem-specific density trait. We conclude that the intraspecific variability of functional traits (leaf thickness, leaf P, and specific leaf area) facilitates species persistence in riparian forests occurring within catchments cleared for agricultural expansion in Amazonia.

Scientific Reports↗

USGS2023

River geomorphology affects biogeochemical responses to hydrologic events in a large river ecosystem

Shifts in the frequency and intensity of high discharge events due to climate change may have important consequences for the hydrology and biogeochemistry of rivers. However, our understanding of event-scale biogeochemical dynamics in large rivers lags that of small streams. To fill this gap, we used high-frequency sensor data collected during four consecutive summers from a main channel and backwater site of the Upper Mississippi River. We identified high discharge events and calculated event concentration-discharge responses for both physical-chemical (nitrate, turbidity, and fluorescent dissolved organic matter) and biological (chlorophyll-a and cyanobacteria) constituents using metrics of hysteresis and slope. We found a range of responses across events, particularly for nitrate. Although fluorescent dissolved organic matter (FDOM) and turbidity exhibited more consistent responses across events, contrasting hysteresis metrics indicated that FDOM was flushed to the river from more distant sources than turbidity. Biological responses (chlorophyll a and cyanobacteria) differed more between sites than physical and chemical constituents. Lastly, we found that the event characteristics best explaining concentration responses differed between sites, with event magnitude more frequently related to responses in the main channel, and antecedent wetness conditions associated with response variation in the backwater. Our results indicate that event responses in large rivers are distinct across the diverse habitats and biogeochemical components of a large floodplain river, which has implications for local and downstream ecosystems as the climate shifts.

Minnesota, Wisconsin↗

USGS2023

Bridging the gap between mathematical biology and undergraduate education using applicable natural resource modeling

Mathematical biology is a wide field of study with many venues that undergraduate students can access through research. However, the topics of study for these students can be overwhelming, and many topics of study yield either only trivial results or abstract outcomes that are nonintuitive and diffcult to understand. We have used natural resource modeling, and more specifically, a partnership between academic researchers and federal scientists, as a bridge between undergraduate research and mathematical biology. Our collaboration is an interdisciplinary team that combines biology, mathematics, and statistics professors with government research scientists. As a team, we have mentored students through opportunities such as a Research Experiences for Undergraduates and other projects. In this article, we provide an overview of how we develop questions for undergraduates and outline two case studies, both of which resulted in peer reviewed journal articles. Last, we describe how we also transfer the results from these undergraduate projects to resource managers so the results may be applied to real world problems.

Letters in Biomathematics↗

USGS2021

Warmer winters increase the biomass of phytoplankton in a large floodplain river

Winters are changing rapidly across the globe but the implications for aquatic productivity and food webs are not well understood. In addition, the degree to which winter dynamics in aquatic systems respond to large-scale climate versus ecosystem-level factors is unclear but important for understanding and managing potential changes. We used a unique winter data set from the Upper Mississippi River System to explore spatial and temporal patterns in phytoplankton biomass (chlorophyll a , CHL) and associated environmental covariates across 25 years and ∼1,500 river km. To assess the role of regional climate versus site-specific drivers of winter CHL, we evaluated whether there were coherent long-term CHL dynamics from north to south and across lotic-lentic areas. We then estimated the degree to which these patterns were associated with climate variability (i.e., the Multivariate El Nino-Southern Oscillation Index), winter severity (freezing degree days), river discharge, or site-specific environmental variables (ice depth, snow depth, and nutrient concentrations). We found that winter CHL was typically highest in ice-free reaches and backwater lakes, occasionally exceeding summer values. We did not find highly synchronous CHL dynamics across the basin, but instead show that temporal trends were independent among river reaches and lotic-lentic areas of the river. Moreover, after accounting for these spatial dynamics, we found that CHL was most responsive to winter air temperature, being consistently higher in years with warmer winters across the basin. These results indicate that although productivity dynamics are highly dynamic within large river ecosystems, changes in the duration and severity of winter may uniformly increase wintertime productivity.

Minnesota, Missouri, Illinois, Iowa, Wisconsin↗

USGS2021

The ecology of river ice

Many of the world's rivers are ice-covered during winter months but increasing evidence indicates that the extent of river ice will shift substantially as winters warm. However, our knowledge of rivers during winter lags far behind that of the growing season, limiting our understanding of how ice loss will affect rivers. Physical, chemical, and biological processes change from headwaters to large rivers; thus, we expect ice processes and resulting effects on the ecology of rivers could also vary with river size, as a result of the associated changes in geomorphology, temperature regimes, and connectivity. To conceptualize these relationships, we review typically disparate literature on ice processes and winter ecology and compare what is known in the smallest and largest rivers. In doing so, we show that our ability to link ice with ecology across river networks is made difficult by a primary focus on ice processes in larger rivers and a lack of study of ecosystem processes during winter. To address some of these gaps, we provide new scenarios of river ice loss and analyses of how the annual importance of winter gross primary productivity (GPP) varies with river size. We show projected ice loss varied with large-scale watershed characteristics such as north-south orientation and that the importance of winter to annual GPP was greatest in the smallest rivers. Finally, we highlight information needed to fill knowledge gaps on winter across river networks and improve our understanding of how rivers may change as climate and ice regimes shift.

JGR Biogeosciences↗

USGS2021

Land use change influences ecosystem function in headwater streams of the Lowland Amazon Basin

Intensive agriculture alters headwater streams, but our understanding of its effects is limited in tropical regions where rates of agricultural expansion and intensification are currently greatest. Riparian forest protections are an important conservation tool, but whether they provide adequate protection of stream function in these areas of rapid tropical agricultural development has not been well studied. To address these gaps, we conducted a study in the lowland Brazilian Amazon, an area undergoing rapid cropland expansion, to assess the effects of land use change on organic matter dynamics (OM), ecosystem metabolism, and nutrient concentrations and uptake (nitrate and phosphate) in 11 first order streams draining forested ( n = 4) or cropland ( n = 7) watersheds with intact riparian forests. We found that streams had similar terrestrial litter inputs, but OM biomass was lower in cropland streams. Gross primary productivity was low and not different between land uses, but ecosystem respiration and net ecosystem production showed greater seasonality in cropland streams. Although we found no difference in stream concentrations of dissolved nutrients, phosphate uptake exceeded nitrate uptake in all streams and was higher in cropland than forested streams. This indicates that streams will be more retentive of phosphorus than nitrogen and that if fertilizer nitrogen reaches streams, it will be exported in stream networks. Overall, we found relatively subtle differences in stream function, indicating that riparian buffers have thus far provided protection against major functional shifts seen in other systems. However, the changes we did observe were linked to watershed scale shifts in hydrology, water temperature, and light availability resulting from watershed deforestation. This has implications for the conservation of tens of thousands of stream kilometers across the expanding Amazon cropland region.

Tanguro Ranch↗