Julio R. Gutierrez | USGS Science

USGS2018

BioTIME: A database of biodiversity time series for the Anthropocene

Motivation The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene. Main types of variables included The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record. Spatial location and grain BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km 2 (158 cm 2 ) to 100 km 2 (1,000,000,000,000 cm 2 ). Time period and grain BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year. Major taxa and level of measurement BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates. Software format .csv and .SQL.

Global Ecology and Biogeography↗

USGS2018

Exclusion of small mammals and lagomorphs invasion interact with human-trampling to drive changes in topsoil microbial community structure and function in semiarid Chile

Species losses and additions can disrupt the relationship between resident species and the structure and functioning of ecosystems. Persistent human-trampling, on the other hand, can have similar effects through the disruption of biocrusts on surface soils of semiarid systems, affecting soil stability and fixation of carbon and nitrogen. Here, we tested the interactive and synergistic impacts of the exclusion of native mammalian herbivores and the effects of introduced lagomorphs in a semiarid thorn scrub ecosystem, where soils were subjected to two different trampling intensities (i.e., trampled and non-trampled). We postulated that because of their differential habitat use and fossorial activities, with respect to native small mammals, lagomorphs would have strong negative effects on soil structure, biocrust cover, and biocrust bacterial community structure. Our expectations were that changes in biocrust cover in response to trampling where native mammals were excluded, but exotic lagomorphs were present, will spread their impacts on soil chemical and physical features. To test our hypotheses, we measured changes in soil biogeochemical properties in four experimental plots where lagomorphs (L)/small mammals (SM) were experimentally manipulated to exclude them from the plots (−), or let them be present (+). The experimental combinations monitored were: -L/+SM, -L/-SM, +L/+SM, and +L/-SM. Results showed that human-trampling disturbance interacted with the loss of native small mammals and the presence of non-native lagomorphs to cause large changes on biological (i.e., biocrust cover, bacterial and nifH genes abundance), physical (i.e., soil moisture and soil stability) and chemical (i.e., TC and TN) soil features. The relative impacts of trampling disturbance on biological and physicochemical features were strongly influenced by the presence of non-native lagomorphs. For example, larger decreases in biocrust cover and bacterial abundance were observed in treatments without lagomorphs (-L/+SM; -L/-SM). In turn, losses of biocrust cover, in addition to trampling, determined decreases in soil stability in all treatments. These results suggest that non-native lagomorphs surpass the effects of the loss of native small mammals in reducing soil quality and productivity. Therefore, human-trampling has the potential to convert low disturbed soils, as those observed in non-trampled soils in treatments -L/+SM, -L/-SM into poor soils with low biocrusts cover and concomitant low stability, as observed in +L/+SM; +L/-SM treatments. These findings agree with previous observations that different components of global change act in synergic ways in fragile, water-limited environments. Because biological invasions and soil surface disturbance are becoming widespread in dryland regions globally, understanding the long-term consequences of these interactions is essential.

Fray Jorge National Park↗