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Geology topics

Julie D. Alexander

Publications and source records attributed to Julie D. Alexander.

2 recordsLinked to original sources

Discharge magnitude drives interannual variation in distribution of the invertebrate host Manayunkia occidentalis of the salmon parasite Ceratonova shasta

Objective The objective of this study was to evaluate statistical evidence for relationships between flow event characteristics and annelid host distribution, an important and necessary step toward providing and justifying management actions. Declines in Klamath River salmon have been attributed to infection and disease that are caused by the myxozoan parasite Ceratonova shasta . Flow manipulation has been used to manage risk of C. shasta for juvenile salmonids in this system. One mechanism by which flow-related disturbance can reduce the risk of C. shasta infection for salmon is by reducing populations of the obligate invertebrate host Manayunkia occidentalis . We previously demonstrated that hydraulic conditions during peak discharge events drive the distribution of M. occidentalis and suggested that high-magnitude flow events would be effective for reducing the distribution of the annelid host. However, evidence of the effects of flow events on M. occidentalis was needed to support the use of flow management. Methods To address this knowledge gap, we leveraged a multiyear data set to estimate relationships between the distribution the annelid host and the characteristics of each discharge event. We measured the presence or absence of M. occidentalis at spatially georeferenced sampling locations, stratified across the range of hydraulic and substrate conditions in three reaches annually from 2012 to 2020. Results During the study period, the magnitude of peak discharge ranged from 52.4 to 314.3 m 3 /s. The inclusion of seven additional years’ data in the base model (hierarchical; annual-level covariate + previous “single year” model) resulted in parameter estimates that were similar to those that were derived for the previous (2016) model, supporting that substrate, depth, and velocity during peak discharge predicted annelid distribution. The magnitude model (base model + annual-level covariate for peak discharge) showed evidence of a strong negative association with annelid presence (95% of all Markov chain–Monte Carlo draws were negative). Every 101.9 m 3 /s increase in peak discharge was associated with an estimated 39% decrease in the odds of annelid presence. The estimated effect of magnitude on the probability of annelid presence was illustrated in the contrast between low- and high-magnitude peak discharge scenarios. For both scenarios, the effects of depth, velocity at peak discharge, and substrate, consistent with the previous model (2016), were evident, as was the further reduction in probability of annelid presence at the higher peak discharge. However, under the low-magnitude discharge scenario, M. occidentalis were predicted to be present on smaller less stable substrates and at a wider range of depths and velocities than they were under the high-magnitude discharge scenario. In contrast to the covariate for magnitude, the inclusion of a duration covariate did not show a strong relationship with annelid distribution, which we attributed to the lack of variation in this covariate during the study period. Conclusions This work provides quantitative evidence that high-magnitude peak discharge flow events lead to lower probabilities of annelid host presence. Lower probabilities of annelid hosts are indicative of a reduced distribution of the M. occidentalis host and in turn reduced risk of C. shasta for salmon.

California

Extending the Stream Salmonid Simulator to accommodate the life history of coho salmon (Oncorhynchus kisutch) in the Klamath River Basin, Northern California

In this report, we apply the stream salmonid simulator (S3) to coho salmon ( Oncorhynchus kisutch ) in the Klamath River Basin by extending the original model to account for life history and disease dynamics specific to coho salmon. This version of S3 includes tracking of three separate life-history strategies representing the different time periods and ages at which fish leave natal tributaries such as the Scott and Shasta Rivers (age-0 spring, age-0 fall, or age-1 smolt). Once fish leave their natal tributaries and enter the Klamath River, the deterministic life-stage-structured population model simulates daily growth, movement, and survival. We extend the model to include non-natal tributary dynamics, where spring age-0 fish entry to non-natal tributaries is simulated based on environmental conditions in the main-stem Klamath River. Fish that use non-natal tributaries then reenter the Klamath River during the winter or spring as smolts and actively migrate downstream. We also consider the life history strategy where fish rear in natal tributaries and enter the Klamath River as age-1 smolts. In addition to simulating different life history pathways that coho salmon may take, we model disease dynamics, incorporating new information on Ceratonova shasta related infection and mortality. We incorporate competitive interactions between juvenile coho and Chinook salmon ( Oncorhynchus tshawytscha ) by simulating density-dependent movement dynamics in response to Chinook salmon abundance. Model simulations suggest that total abundance and survival to the ocean differed between life-history strategies. In general, spring age-0 fish that leave their natal tributaries in their first spring had lower survival compared with fish that remained in natal tributaries and out-migrated later. Spring age-0 fish also had higher disease related mortality, owing to their residence in the main-stem Klamath River overlapping with periods of elevated C. shasta spore concentrations. Age-0 fish leaving their natal tributaries in the fall had near-zero disease related mortality. Most non-natal tributary use occurred at upstream tributary locations and was variable between the brood years depending on passage timing and environmental conditions. The inclusion of Chinook salmon in simulations resulted in decreased abundance and survival of Coho salmon reaching the ocean. In addition, we developed an R package to facilitate use of and continued development of S3 as a tool to guide management of juvenile salmonid populations.

California