USGS ScienceSearch

Geology topics

Joshua A. Gage

Publications and source records attributed to Joshua A. Gage.

3 recordsLinked to original sources

Can big data inform invasive dreissenid mussel risk assessments of habitat suitability?

Invasion risk assessments of habitat suitability provide insight on early detection effort allocation; however, sufficient data are rarely available to inform assessments. We explored tradeoffs of leveraging big data from the National Water Quality Portal (WQP), a standardized water quality database in the United States, to inform calcium- and pH-based risk assessments of invasive mussel ( Dreissena polymorpha and Dreissena rostriformis bugensis ) habitat suitability in the Pacific Northwest’s Columbia River Basin. We evaluated risk assessment sensitivity to alternative metrics of summarizing WQP data, tested if the large number of WQP observations resulted in accurate risk prediction of sites lacking WQP data, and characterized the spatial distribution of suitable habitat. Risk assessments were insensitive to how data were summarized at a site. Predictive accuracy was low when interpolating risk to sites lacking data. High-risk sites based on calcium clustered in two water basins, whereas high-risk sites based on pH were at similarly high frequencies. Finally, we found that data gaps still exist in the Columbia River Basin despite the large volumes of WQP data. We conclude that WQP-based risk assessments of habitat suitability could be considered as a starting place for estimating dreissenid invasion risk within an adaptive framework, rather than as a final solution.

Hydrobiologia

Migration Mapper: Identifying movement corridors and seasonal ranges for large mammal conservation

Modern tracking technology has facilitated a novel understanding of terrestrial mammal movement while revealing that movements are being truncated and lost. The first step towards conserving mobile animals is identifying movement corridors and key seasonal ranges. Yet, the identification and subsequent mapping of these important areas has remained a challenge due to the analytical skills necessary to conduct such analyses. Migration Mapper (MM) is a user-friendly software that provides tools to analyse global positioning system (GPS) collar data to create season-specific, population-level polygons representing areas where most of a population moves (i.e. movement corridors) and areas where most of a population spends time (e.g. high-use areas, seasonal ranges). MM consists of six standalone modules including data cleaning and review, seasonal movement delineation, movement model application, calculation of population-level outputs and visualization of results. Analysis of GPS data using MM can provide the spatial polygons necessary to facilitate conservation and policy planning. New initiatives at the local and global levels are already beginning to use MM to facilitate conservation of large, terrestrial mammals.

Methods in Ecology and Evolution

Integrating environmental DNA results with diverse data sets to improve biosurveillance of river health

Autonomous, robotic environmental (e)DNA samplers now make it possible for biological observations to match the scale and quality of abiotic measurements collected by automated sensor networks. Merging these automated data streams may allow for improved insight into biotic responses to environmental change and stressors. Here, we merged eDNA data collected by robotic samplers installed at three U.S. Geological Survey (USGS) streamgages with gridded daily weather data, and daily water quality and quantity data into a cloud-hosted database. The eDNA targets were a rare fish parasite and a more common salmonid fish. We then used computationally expedient Bayesian hierarchical occupancy models to evaluate associations between abiotic conditions and eDNA detections and to simulate how uncertainty in result interpretation changes with the frequency of autonomous robotic eDNA sample collection. We developed scripts to automate data merging, cleaning and analysis steps into a chained-step, workflow. We found that inclusion of abiotic covariates only provided improved insight for the more common salmonid fish since its DNA was more frequently detected. Rare fish parasite DNA was infrequently detected, which caused occupancy parameter estimates and covariate associations to have high uncertainty. Our simulations found that collecting samples at least once per day resulted in more detections and less parameter uncertainty than less frequent sampling. Our occupancy and simulation results together demonstrate the advantages of robotic eDNA samplers and how these samples can be combined with easy to acquire, publicly available data to foster real-time biosurveillance and forecasting.

Idaho, Wyoming, Montana