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Joseph J. Skalicky

Publications and source records attributed to Joseph J. Skalicky.

10 recordsLinked to original sources
USGS2023

Synthesis of larval lamprey responses to dewatering: State of the science, critical uncertainties, and management implications

Objective Dewatering of fine sediments in rivers and streams can kill many thousands of larval lampreys (order Petromyzontiformes) that are burrowed in these habitats. The larval life stage for lampreys lasts 3–10 years, and because larvae often aggregate in large numbers, negative impacts from dewatering could potentially deplete local populations and affect multiple year-classes. Larval lampreys have not traditionally been considered during instream projects, but recent efforts to increase awareness of lamprey habitats have resulted in guidance on dewatering approaches to limit impacts to lampreys. Salvage efforts to rescue and relocate lampreys aim to mitigate losses, but a lack of understanding of lamprey responses limits the optimization of dewatering and salvage procedures. Methods We summarize the state of the science for nine factors that influence larval lamprey ( Entosphenus and Lampetra spp.) responses to dewatering, including burrowing depth, the prevalence and timing of emergence, movements, survival, shoreline slope, dewatering rate, light, and lamprey size. Result Research suggests that (1) shoreline slope influences movement capability, (2) hot and sunny conditions increase the risk of mortality, (3) salvage activities cause minimal direct mortality, and (4) smaller larvae are especially vulnerable to negative impacts from dewatering because they are more likely to emerge and are less capable of movement. Critical uncertainties associated with dewatering include cues that drive emergence, the influence of sediment composition and stratigraphy, vertical distribution of larvae in natural settings, use of the hyporheic zone, the scale of predation losses, and the effectiveness and impacts of salvage activities. Conclusion Balancing investments in salvage operations and lamprey exclusion efforts (e.g., screening) and developing field survey approaches to evaluate lamprey use of the hyporheic zone are identified management implications and research needs. Addressing the critical uncertainties discussed here and providing updated, science-based guidance on dewatering and salvage practices are suggested management actions to support lamprey conservation.

North American Journal of Fisheries Management↗
USGS2023

Salvage using electrofishing methods caused minimal mortality of burrowed and emerged larval lampreys in dewatered habitats

Objective Human-induced dewatering of freshwater habitats causes mortality of larval lampreys (family Petromyzontidae). Salvage by electrofishing at dewatering events is assumed to reduce this mortality, but to our knowledge this assumption remains unassessed. Methods We estimated mortality of salvaged larval lampreys ( Lampetra spp. and Pacific Lamprey Entosphenus tridentatus ) within 24 h following collection at field dewatering events in July and October. To assess when salvage may reduce mortality, we compared mortality of salvaged individuals from field dewatering events to mortality of burrowed and emerged individuals in dewatered habitats in the laboratory. Salvage protocols included electrofishing and foot pressure from walking in test enclosures before and after dewatering. Electrofishing after dewatering (“dry shocking”) involves positioning probes on moist sediment to entice burrowed larval lampreys to emerge. Result During the July salvage, air temperature averaged 36°C, bottom water temperature averaged 20°C, and many emerged larval lampreys were dead on the sediment surface. During two October events, air temperatures averaged 18 and 11°C, bottom water temperatures averaged 12 and 7°C, and only one dead emerged larval lamprey was observed. Estimated mortality of salvaged larval lampreys was 0.20 (90% credible interval = 0.09–0.37) in July and 0.00 (90% credible interval = 0.00–0.06) and 0.06 (90% credible interval = 0.01–0.18) in October. All larval lampreys that remained burrowed and were excavated from enclosures after salvage were dead in July but alive in October. Logistic regression suggested that mortality declined with increasing larval length. Mortality of salvaged 80-mm larval lampreys in October was lower than that of 80-mm individuals emerged for 1 h or burrowed for 8 h at similar water temperatures (8–10°C) in the laboratory. Conclusion In this study, electrofishing for salvage caused minimal mortality of burrowed and emerged larval lampreys in dewatered habitats. Thus, salvage using electrofishing methods could aid conservation of native lampreys by reducing mortality associated with human-induced dewatering events, especially when temperatures are elevated.

Washington↗
USGS2022

Collection of larval lampreys (Entosphenus tridentatus and Lampetra spp.) using a portable suction dredge—A pilot test

A portable suction-dredge and sluice-box system were used to collect larval lampreys ( Entosphenus tridentatus and Lampetra spp.) from fine and coarse sediment in field and laboratory tests. We evaluated the injury rate, survival, and burrowing capability of lamprey following passage through the dredge system and used collection of lamprey from water without sediment as a control. The system used a hydraulic eductor (also known as a Venturi valve) to create suction so that sediment and lamprey avoided passage through the pump impeller. For the field test, lamprey were tagged with visible elastomer implants based on small (89 millimeter [mm] or less) and large (92 mm or more) size categories and stocked into mesh enclosures over fine or coarse sediment. The dredge was used inside each enclosure to collect lamprey and they were transported to the laboratory for evaluation and holding. The mean time to burrow was recorded for each study group (3 fine, 3 coarse, 3 controls) on the day of the field test; injury was evaluated at 24 hours; and survival was evaluated at 24 hours, and at 7 and 14 days after the test. The suction dredge collected 32 lamprey in fine sediment, 21 lamprey in coarse sediment, and 28 lamprey in the control group, including 30 lamprey that were not initially stocked. One lamprey died the day of the test (fine sediment) and 24 hours later, three lamprey were found to be injured (2 in fine and 1 in coarse sediment). No injuries or mortalities occurred in the control group. Lamprey burrowing performance was similar across the two treatment groups and the controls. The mean time for all fish in a group to burrow was highly variable. For all groups in a treatment combined, the mean burrow times were fastest for the fine treatment (9.8 minutes), followed by the controls (11.4 minutes) and the coarse treatment (11.6 minutes). The mean times to burrow for the main group of fish in each treatment group (those that burrowed in quick succession) were similar: 4.3 minutes for the fine group, 4.4 minutes for the coarse group, and 4.5 minutes for the controls. The laboratory test collected 147 lamprey (73 small and 74 large size category) from coarse sediment using the same procedures as the field test. One fish (small) was killed the day of the test, and six lamprey (3 small and 3 large) were found with injuries during the 24-hour exams. No mortalities were recorded 7 days after the test, when monitoring was terminated. The overall injury rate for the laboratory test was 4.1 percent and the mortality rate was 0.7 percent. Injuries in the field and laboratory tests were localized minor hemorrhages or red, irritated areas. The suction- dredge system appears to be a safe option to collect larval lamprey from sediment and will be a useful addition to lamprey assessment and salvage tools.

Washington↗
USGS2021

Evaluation of larval lamprey survival following salvage: A pilot study

Larval lampreys ( Entosphenus tridentatus and Lampetra spp.) are vulnerable to anthropogenic water-level fluctuations that can dewater their habitat. Dewatering events occur regularly in the Columbia River Basin for operation and management of hydropower facilities, seasonal or maintenance closures of irrigation diversions, and in-water construction projects, including for habitat restoration. Salvage efforts which can be initiated before, during, and after dewatering events are resource-intensive and are conducted based on the assumption that salvage will reduce lamprey mortality. This pilot study was the first formal assessment of the efficacy of salvage efforts, evaluating the survival and performance of larval lamprey following various salvage techniques. Lampreys were salvaged during dewatering events at three field sites under variable environmental conditions (summer and fall of 2020) and then held in the laboratory for 60 days to monitor survival, growth, and burrowing performance. Four salvage treatments were defined to represent combinations of typical salvage techniques and stressors, including multiple passes of standard electrofishing (SEF), lamprey-specific electrofishing (LEF), and modified lamprey-specific electrofishing (MLEF; probes in direct contact with dewatered, but moist substrate) as well as extended exposure on the surface and walking on sediment where lampreys were burrowed. Control groups did not experience dewatering and were collected using LEF in areas away from treatment groups. Treatments were designed to increase in intensity, from treatment 1 (walking and exposure) to treatment 4 (multiple passes of SEF, LEF and MLEF). Study sites included an earthen hatchery rearing pond (North Toutle Hatchery) dewatered in July, and two irrigation diversions (Wapato and Sunnyside diversions on Yakima River) dewatered at the end of the irrigation season in October. Treatments were executed inside circular 1 m2 enclosures that were randomly positioned in habitats expected to be dewatered. A solid, weighted ring at the bottom of the enclosure penetrated the sediment and netting extended through the water column to a floating upper ring. We deployed eight enclosures per treatment at each test site, executed the four salvage treatments, collected lamprey from within each enclosure and transported them to the laboratory, along with the control groups, for the 60-day holding period. Burrowing performance was tested in sand 1 day after the field effort and in field-collected sediment 30 days after the field effort. Mortality was documented and lamprey were measured at 1, 30, and 60 days in the laboratory and fish weights were used to calculate standard growth rate (SGR) for each site and treatment group. We collected 328 larval lampreys at our three test sites, including 71 controls and 257 larvae exposed to dewatering and salvage treatments. Overall mortality for the 60-day laboratory holding period was 11.9%. Most mortality occurred within 1-day after treatment (51.3%) and there was limited mortality past 30 days (2.6%). At the North Toutle Hatchery, we observed substantial mortality during the field tests in July, both inside and outside of our test enclosures. Mortality within our test enclosures ranged from 96.7 to 98.8% for treatment 1, 45.9 to 52.2% for treatment 3 and 6.7 to 7.1% for treatment 4. The elevated mortality at this site and logistical challenges with the execution of treatments 1 and 2 resulted in few fish (5 total for treatment 1) or no fish (treatment 2) available for testing in the laboratory. Only one larval lamprey died during field tests at the Wapato and Sunnyside irrigation diversions during testing in October. The single mortality was in treatment 1 (11.1%) and no mortalities were observed outside of the test enclosures. We used logistic regression to estimate survival of larval lampreys transported to the laboratory and held for 24 h. The Wapato and Sunnyside field sites were pooled for logistic regression and the North Toutle Hatchery site was analyzed separately due to dramatically different environmental conditions. We found that treatment 1 reduced larval survival more than any other treatment during both the summer and fall dewatering events. Trends among survival for treatments 2-4 were less clear. The unique stressor included in the first treatment, but not in other treatments, was a 2-hour exposure period during which larvae were left lying on the surface of the sediment. Treatment 1 also experienced a walking action (foot pressure on the surface of the exposed sediment). The walking action was also included in treatment 4, both before and after dewatering, along with multiple passes of various electrofishing techniques, as this treatment was designed to be a worst-case scenario for lamprey salvage. Despite what appeared to be significant stressors associated with treatment 4, the logistic regression for survival up to 24 hours in the laboratory showed that the odds of surviving treatment 4 were 16 times higher than the odds of surviving treatment 1 at Wapato and Sunnyside (combined). The same comparison at the North Toutle Hatchery showed the odds were 226 times higher for lamprey to survive treatment 4 compared to treatment 1. Lamprey from all study sites initiated burrowing activity with median times less than 10.5 seconds in both sand (day 1) and field-collected sediment (day 30). The fastest burrowing start times were less than 1.0 second and the slowest was 3.2 minutes. Lamprey behavioral responses during burrowing ability tests were variable. Some lampreys immediately moved from the release location near the surface of the water toward the sediment and began burrowing while others swam around the aquarium near the surface of the water before exploring the sediment to select a burrowing location. The median time to complete burrowing for all treatment groups and sample periods ranged from 9.9 to 48.1 seconds. No significant differences in SGR were detected between treatment and control groups at any test site. Laboratory water temperatures for the North Toutle Hatchery study groups were maintained at 15°C, giving lamprey a growth advantage compared to the Wapato and Sunnyside groups which were maintained at 10℃. SGR for lamprey collected at the North Toutle Hatchery ranged from 0.83% weight gain/day for controls to 2.04%/day for treatment 3. SGR at Wapato ranged from 0.27 to 0.67%/day and from 0.60 to 0.90 %/day at Sunnyside. Overall, SGR was consistently lower at every site for the controls compared to any of the treatment groups, although none of the differences were significant. The variability at some sites in initial lamprey size, combined with inherent variability in growth rates, limited our ability to make conclusions about how different salvage treatments influenced SGR. Treatment 1 stood out among the salvage treatments at all study sites. In this treatment, lampreys exposed on the surface of the sediment, awaiting salvage, were vulnerable to reduced survival, even under mild environmental conditions. The risk of mortality was greatest for the summer dewatering event at the North Toutle Hatchery. The remaining treatments, even with multiple passes of various electrofishing techniques, did not generally have large negative impacts on lamprey during our tests. Lamprey survival rates for these treatments were relatively high, especially at the fall dewatering sites when environmental conditions were mild. Thus, salvage efforts, despite being resource intensive, likely have limited negative outcomes for larval lamprey and make substantial contributions to lamprey conservation efforts.

Report↗
USGS2020

Effects of dewatering on behavior, distribution, and abundance of larval lampreys

Anthropogenic dewatering of aquatic habitats can cause stranding and mortality of burrowed larval lampreys; however, the effects of dewatering have not been quantified. We assessed: (a) changes in spatial distribution, abundance, and emergence of larvae dewatered at Leaburg Reservoir (OR); (b) emergence and mortality of larvae dewatered in a laboratory; and (c) bias, precision, and interpretation of field results by simulation and modeling of laboratory results. In the field, we examined the distribution, abundance (by N‐mixture model), and density of larvae by electrofishing at randomly selected sites before dewatering and after refill, and assessed the emergence rate by observation and excavation during dewatering. Due to dewatering in the field, about 42% of larvae emerged and spatial distribution changed toward sites dewatered less than 20 hours. Estimated average density decreased from 10.8 larvae/m 2 before dewatering to 2.3 larvae/m 2 after refilling, suggesting that abundance declined by 79%; simulation suggested this decline ranged 71–84% (interquartile range). In the laboratory, we examined the emergence and mortality rates of larvae dewatered 0–48 hrs. The emergence rate in the laboratory was similar to that in the field. Mortality rate increased with hours dewatered and was higher for emerged than burrowed larvae. Laboratory estimates of mortality rate predicted a 61% decline in abundance if only burrowed larvae survived and a 54% decline if both burrowed and emerged larvae survived. Abundance declines in the field could be from mortality (e.g., desiccation, predation) and relocation to watered habitat. Our results indicate dewatering can substantially affect spatial distribution and abundance of larval lampreys in freshwater ecosystems.

Oregon↗
USGS2020

Evaluating dewatering approaches to protect larval Pacific lamprey

Executive Summary Larval Pacific lamprey live for several years burrowed in nearshore sediments where they filter feed on detritus and organic matter. Dewatering of larval habitat can occur as a result of flow-management practices, construction projects, or seasonal closures of irrigation diversions. Effective management of dewatering events requires guidance on approaches to protect lamprey, such as dewatering rates and light conditions (day or night) that allow lamprey the best opportunity to relocate water and avoid being stranded. We conducted controlled laboratory experiments comparing five dewatering rates (1, 1.8, 4, 8, and 16 inches per hour [in/h]) and two light conditions (light and dark) to evaluate their effectiveness in protecting larval lamprey. We used a tank with a simulated shoreline at a 10-percent slope filled with river sediment and manipulated the outflow to control the rate of dewatering until water was covering only the sediment in the lowest tank section, at the bottom of the slope. Following dewatering, larvae were classified as either stranded (in or on the substrate outside the watered area) or safe (relocated to the wetted area at the lower end of the tank). All study groups experienced high rates of stranding. The lowest stranding rates were for 1 in/h, in both light (77 percent) and dark (80 percent). Faster dewatering rates generally produced higher percentages of stranded fish, and both the dark and light trials at 16 in/h stranded all larvae. At each of the five dewatering rates, trials conducted in the dark stranded the same or higher proportions of fish than the corresponding trial conducted in the light, so there was no clear advantage to dewatering during dark conditions. The largest contribution to stranding rates for all study groups was the high number of larvae (50–80 percent) that did not initiate movement in response to dewatering and remained in the uppermost tank section where they were stocked at the start of the trials. The proportion of larvae that emerged from the sediment during dewatering trials was approximately 30 percent, and fish that emerged were consistently smaller than those that remained burrowed. Combining all dewatering rates, emergence was 31.3 percent for groups under dark conditions and 30.7 percent for groups under light conditions. We recorded the timing of emergence for 58 larvae and their median time to emerge (after the surface of the sediment in the uppermost tank section was dewatered) was 0.62 hour (h) (range 0–4.5 h). We measured larval movement rates and found that large fish moved faster than small fish. Differences in larval movement rate based on light condition were significant only for large fish, which had a significantly faster rate during light conditions. Larval lamprey moved, over short distances, at rates that exceeded the fastest dewatering rate we tested. The mean movement rates for groups ranged from 19.0 to 44.4 centimeters per minute [cm/min]) and the fastest dewatering rate (16 in/h) is equivalent to less than 1 cm/min. Only the slowest movement rate measured, 6.6 cm/min for one individual lamprey, was slower than the fastest dewatering rate. We also investigated lamprey responses to a series of dewatering and rewatering events. Individual larvae were held in cylinders and exposed to four cycles of dewatering and rewatering using dewatering rates of 1 and 16 in/h and a rewatering rate of 2 in/h. Each dewatering rate was tested under both dark and light conditions. The location of fish, either on the surface of the sediment or burrowed, was recorded after each dewatering event for four rounds. The most common individual fish response for all study groups was to remain burrowed through all four rounds, and there were large differences in response between small and large larvae. Overall for small larvae, combining all groups, 14 of 28 fish emerged, and of those, 8 died and 1 was lethargic. The 1-in/h rate had 7 of the 8 mortalities, split about equally between the dark (3 fish) and light (4 fish) trials. All but one fish that died emerged from the sediment at some point during the four rounds of dewatering. Large larvae predominantly remained burrowed in all four rounds and did not experience any mortality. None of the large fish emerged for more than a single round, and emergence occurred only in the first and second rounds. Larvae emerged more quickly as the number of dewatering events increased. The mean time to emerge after the surface of the sediment in the tube was dewatered, combing all four groups, was 42 minutes (min) in round 1 (14 fish), 16 min in round 2 (5 fish), 11 min in round 3 (3 fish), and 8 minutes in round 4 (3 fish). When all groups and rounds of dewatering were combined, the overall mean time to emerge was 29 min (25 fish) and ranged from 1 min to 2 hours after the surface of the sediment was dewatered. Larvae burrowed deeper during the 1-in/h trials than the 16-in/h trials, and few fish were deeper than about 23 centimeters (cm). Large larvae burrowed deeper than small larvae. Small larvae were most concentrated from 0 to 7.6 cm (83.7 percent), and large fish were concentrated from 15.2 to 22.8 cm (43.3 percent). The second dewatering event resulted in greater mean burrowing depth than the first event, but trends after the second event were less clear. Larval size played a role in lamprey responses to dewatering, having a significant effect on emergence, movement rate, and vertical distribution. The sediment used for laboratory testing or occupied by lamprey in the field appears to affect lamprey response to dewatering and deserves greater attention in future studies. Larvae were more active in the dark, but darkness did not consistently provide better outcomes (e.g., more emergence or reduced stranding) compared to daylight. An improved understanding of the cues that prompt larvae to emerge from the sediment, combined with the ability to manage dewatering rates, would be useful to guide future dewatering events to minimize negative effects to lamprey.

Open-File Report↗
USGS2015

Effects of dam removal on Tule Fall Chinook salmon spawning habitat in the White Salmon River, Washington

Condit Dam is one of the largest hydroelectric dams ever removed in the USA. Breached in a single explosive event in October 2011, hundreds-of-thousands of cubic metres of sediment washed down the White Salmon River onto spawning grounds of a threatened species, Columbia River tule fall Chinook salmon Oncorhynchus tshawytscha. We investigated over a 3-year period (2010–2012) how dam breaching affected channel morphology, river hydraulics, sediment composition and tule fall Chinook salmon (hereafter ‘tule salmon’) spawning habitat in the lower 1.7 km of the White Salmon River (project area). As expected, dam breaching dramatically affected channel morphology and spawning habitat due to a large load of sediment released from Northwestern Lake. Forty-two per cent of the project area that was previously covered in water was converted into islands or new shoreline, while a large pool near the mouth filled with sediments and a delta formed at the mouth. A two-dimensional hydrodynamic model revealed that pool area decreased 68.7% in the project area, while glides and riffles increased 659% and 530%, respectively. A spatially explicit habitat model found the mean probability of spawning habitat increased 46.2% after dam breaching due to an increase in glides and riffles. Shifting channels and bank instability continue to negatively affect some spawning habitat as sediments continue to wash downstream from former Northwestern Lake, but 300 m of new spawning habitat (river kilometre 0.6 to 0.9) that formed immediately post-breach has persisted into 2015. Less than 10% of tule salmon have spawned upstream of the former dam site to date, but the run sizes appear healthy and stable. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.

Washington↗
USGS2010

Diel behavior of rearing fall Chinook salmon

In fisheries science, habitat use is often inferred when fish are sampled or observed in a particular location. Physical habitat is typically measured where fish are found, and thus deemed important to habitat use. Although less common, a more informative approach is to measure or observe fish behavior within given habitats to more thoroughly assess their use of those locations. While this approach better reflects how fish use habitat, fish behavior can be difficult to quantify, particularly at night. For example, Tiffan and others (2002, 2006) were able to quantify habitat availability and characteristics that were important for rearing juvenile fall Chinook Salmon (Oncorhynchus tshawytscha) in the Hanford Reach of the Columbia River. The authors, however, could only speculate as to how juvenile salmon use habitat and respond to changes in water level fluctuations. Conversely, in this study we provide data on the diel activities of rearing juvenile wild fall Chinook Salmon which provides a better understanding of how fish “use” these rearing habitats. Diel behavior patterns are important because fish in the Hanford Reach are often stranded on shorelines when the water level rapidly recedes because of hydroelectric power generation at upriver dams (Nugent and others 2002; Anglin and others 2006). We hypothesize that juvenile salmon are at greater risk of stranding at night because they are less active and occupy habitat differently than during the day. We used underwater videography to collect behavioral information during the day and night to determine if juvenile fall Chinook Salmon are more susceptible to stranding when water level fluctuations occur at night.

Northwestern Naturalist↗
USGS2009

A spatial model to assess the effects of hydropower operations on Columbia River fall Chinook Salmon spawning habitat

Priest Rapids Dam on the Columbia River produces large daily and hourly streamflow fluctuations throughout the Hanford Reach during the period when fall Chinook salmon Oncorhynchus tshawytscha are selecting spawning habitat, constructing redds, and actively engaged in spawning. Concern over the detrimental effects of these fluctuations prompted us to quantify the effects of variable flows on the amount and persistence of fall Chinook salmon spawning habitat in the Hanford Reach. Specifically, our goal was to develop a management tool capable of quantifying the effects of current and alternative hydrographs on predicted spawning habitat in a spatially explicit manner. Toward this goal, we modeled the water velocities and depths that fall Chinook salmon experienced during the 2004 spawning season, plus what they would probably have experienced under several alternative (i.e., synthetic) hydrographs, using both one- and two-dimensional hydrodynamic models. To estimate spawning habitat under existing or alternative hydrographs, we used cell-based modeling and logistic regression to construct and compare numerous spatial habitat models. We found that fall Chinook salmon were more likely to spawn at locations where velocities were persistently greater than 1 m/s and in areas where fluctuating water velocities were reduced. Simulations of alternative dam operations indicate that the quantity of spawning habitat is expected to increase as streamflow fluctuations are reduced during the spawning season. The spatial habitat models that we developed provide management agencies with a quantitative tool for predicting, in a spatially explicit manner, the effects of different flow regimes on fall Chinook salmon spawning habitat in the Hanford Reach. In addition to characterizing temporally varying habitat conditions, our research describes an analytical approach that could be applied in other highly variable aquatic systems.

North American Journal of Fisheries Management↗