Geology topics

Joanna B. Whittier

Publications and source records attributed to Joanna B. Whittier.

13 recordsLinked to original sources

USGS2023

Assessing impacts of human stressors on stream fish habitats across the Mississippi River basin

Effective conservation of stream fishes and their habitats is complicated by the fact that human stressors alter the way in which natural factors such as stream size, catchment geology, and regional climate influence stream ecosystems. Consequently, efforts to assess the condition of stream fishes and their habitats must not only attempt to characterize the effects of human stressors but must account for the effects of natural influences as well. This study is an assessment of all stream fish habitats in the Mississippi River basin, USA. The basin supports over 400 stream fish species, drains a land area of 3.2 M km 2 , and includes a myriad of human stressors such as intensive agriculture, urbanization, nutrient loading, and habitat fragmentation by dams and road/stream crossings. To effectively characterize types and levels of human stressors specifically impacting the basin’s stream fish species, our assessment approach first accounted for the influence of natural landscape conditions on species abundances with multiple steps, including stratifying our analyses by region and stream size and quantitatively modeling the influences of natural factors on stream fishes. We next quantified individual fish species responses to explicit human stressors for different measures of land use, fragmentation, and water quality, including summaries of measures in local vs. catchment extents. Results showed that many species had negative threshold responses to human stressors and that impacts varied by species, by region, and by the spatial extents in which stressors were summarized. Our spatially explicit results indicated the degree of stream reach impairment for specific stressor categories, for individual species, and for entire assemblages, all of which are types of information that can aid decision makers in achieving specific conservation goals in the region.

Mississippi River basin↗

USGS2022

Asking nicely: Best practices for requesting data

Compiling disparate datasets into publicly available composite databases helps natural resource communities explore ecological trends and effectively manage across spatiotemporal scales. Though some studies have reported on the database construction phase, fewer have evaluated the data acquisition and distribution process. To facilitate future data sharing collaborations, Louisiana State University surveyed data providers and requestors to understand the characteristics of effective data requests and sharing. Data providers were largely U.S. natural resource agency personnel, and they reported that unclear data requests, privacy issues, and rigid timelines and formats were the greatest barriers toward providing data, but that they were motivated by improving science and collaboration. Data requestors identified challenges such as evolving needs, standardization issues, and insufficient resources (time and funding) as barriers to compiling data for these types of efforts. In a time of big data, open access, and collaboration, significant scientific advances can be made with effective requests and inclusion of data sets into larger and more powerful databases.

Ecological Indicators↗

USGS2020

Use of multiple temperature logger models can alter conclusions

Remote temperature loggers are often used to measure water temperatures for ecological studies and by regulatory agencies to determine whether water quality standards are being maintained. Equipment specifications are often given a cursory review in the methods; however, the effect of temperature logger model is rarely addressed in the discussion. In a laboratory environment, we compared measurements from three models of temperature loggers at 5 to 40 °C to better understand the utility of these devices. Mean water temperatures recorded by logger models differed statistically even for those with similar accuracy specifications, but were still within manufacturer accuracy specifications. Maximum mean temperature difference between models was 0.4 °C which could have regulatory and ecological implications, such as when a 0.3 °C temperature change triggers a water quality violation or increases species mortality rates. Additionally, precision should be reported as the overall precision (including a consideration of significant digits) for combined model types which in our experiment was 0.7 °C, not the ≤0.4 °C for individual models. Our results affirm that analyzing data collected by different logger models can result in potentially erroneous conclusions when <1 °C difference has regulatory compliance or ecological implications and that combining data from multiple logger models can reduce the overall precision of results.

Water↗

USGS2018

Future southcentral US wildfire probability due to climate change

Globally, changing fire regimes due to climate is one of the greatest threats to ecosystems and society. In this paper, we present projections of future fire probability for the southcentral USA using downscaled climate projections and the Physical Chemistry Fire Frequency Model (PC2FM). Future fire probability is projected to both increase and decrease across the study region of Oklahoma, New Mexico, and Texas. Among all end-of-century projections, change in fire probabilities (CFPs) range from − 51 to + 240%. Greatest absolute increases in fire probability are shown for areas within the range of approximately 75 to 160 cm mean annual precipitation (MAP), regardless of climate model. Although fire is likely to become more frequent across the southcentral USA, spatial patterns may remain similar unless significant increases in precipitation occur, whereby more extensive areas with increased fire probability are predicted. Perhaps one of the most important results is illumination of climate changes where fire probability response (+, −) may deviate (i.e., tipping points). Fire regimes of southcentral US ecosystems occur in a geographic transition zone from reactant- to reaction-limited conditions, potentially making them uniquely responsive to different scenarios of temperature and precipitation changes. Identification and description of these conditions may help anticipate fire regime changes that will affect human health, agriculture, species conservation, and nutrient and water cycling.

Climate Change↗

USGS2017

Forecasted range shifts of arid-land fishes in response to climate change

Climate change is poised to alter the distributional limits, center, and size of many species. Traits may influence different aspects of range shifts, with trophic generality facilitating shifts at the leading edge, and greater thermal tolerance limiting contractions at the trailing edge. The generality of relationships between traits and range shifts remains ambiguous however, especially for imperiled fishes residing in xeric riverscapes. Our objectives were to quantify contemporary fish distributions in the Lower Colorado River Basin, forecast climate change by 2085 using two general circulation models, and quantify shifts in the limits, center, and size of fish elevational ranges according to fish traits. We examined relationships among traits and range shift metrics either singly using univariate linear modeling or combined with multivariate redundancy analysis. We found that trophic and dispersal traits were associated with shifts at the leading and trailing edges, respectively, although projected range shifts were largely unexplained by traits. As expected, piscivores and omnivores with broader diets shifted upslope most at the leading edge while more specialized invertivores exhibited minimal changes. Fishes that were more mobile shifted upslope most at the trailing edge, defying predictions. No traits explained changes in range center or size. Finally, current preference explained multivariate range shifts, as fishes with faster current preferences exhibited smaller multivariate changes. Although range shifts were largely unexplained by traits, more specialized invertivorous fishes with lower dispersal propensity or greater current preference may require the greatest conservation efforts because of their limited capacity to shift ranges under climate change.

Reviews in Fish Biology and Fisheries↗

USGS2017

Annual changes in seasonal river water temperatures in the eastern and western United States

Changes in river water temperatures are anticipated to have direct effects on thermal habitat and fish population vital rates, and therefore, understanding temporal trends in water temperatures may be necessary for predicting changes in thermal habitat and how species might respond to such changes. However, many investigations into trends in water temperatures use regression methods that assume long-term monotonic changes in temperature, when in fact changes are likely to be nonmonotonic. Therefore, our objective was to highlight the need and provide an example of an analytical method to better quantify the short-term, nonmonotonic temporal changes in thermal habitat that are likely necessary to determine the effects of changing thermal conditions on fish populations and communities. To achieve this objective, this study uses Bayesian dynamic linear models (DLMs) to examine seasonal trends in river water temperatures from sites located in the eastern and western United States, regions that have dramatically different riverine habitats and fish communities. We estimated the annual rate of change in water temperature and found little evidence of seasonal changes in water temperatures in the eastern U.S. We found more evidence of warming for river sites located in the western U.S., particularly during the fall and winter seasons. Use of DLMs provided a more detailed view of temporal dynamics in river thermal habitat compared to more traditional methods by quantifying year-to-year changes and associated uncertainty, providing managers with the information needed to adapt decision making to short-term changes in habitat conditions that may be necessary for conserving aquatic resources in the face of a changing climate.

Upper Colorado River Basin↗

USGS2017

Environmental niche models for riverine desert fishes and their similarity according to phylogeny and functionality

Environmental filtering and competitive exclusion are hypotheses frequently invoked in explaining species' environmental niches (i.e., geographic distributions). A key assumption in both hypotheses is that the functional niche (i.e., species traits) governs the environmental niche, but few studies have rigorously evaluated this assumption. Furthermore, phylogeny could be associated with these hypotheses if it is predictive of functional niche similarity via phylogenetic signal or convergent evolution, or of environmental niche similarity through phylogenetic attraction or repulsion. The objectives of this study were to investigate relationships between environmental niches, functional niches, and phylogenies of fishes of the Upper (UCRB) and Lower (LCRB) Colorado River Basins of southwestern North America. We predicted that functionally similar species would have similar environmental niches (i.e., environmental filtering) and that closely related species would be functionally similar (i.e., phylogenetic signal) and possess similar environmental niches (i.e., phylogenetic attraction). Environmental niches were quantified using environmental niche modeling, and functional similarity was determined using functional trait data. Nonnatives in the UCRB provided the only support for environmental filtering, which resulted from several warmwater nonnatives having dam number as a common predictor of their distributions, whereas several cool- and coldwater nonnatives shared mean annual air temperature as an important distributional predictor. Phylogenetic signal was supported for both natives and nonnatives in both basins. Lastly, phylogenetic attraction was only supported for native fishes in the LCRB and for nonnative fishes in the UCRB. Our results indicated that functional similarity was heavily influenced by evolutionary history, but that phylogenetic relationships and functional traits may not always predict the environmental distribution of species. However, the similarity of environmental niches among warmwater centrarchids, ictalurids, fundulids, and poeciliids in the UCRB indicated that dam removals could influence the distribution of these nonnatives simultaneously, thus providing greater conservation benefits. However, this same management strategy would have more limited effects on nonnative salmonids, catostomids, and percids with colder temperature preferences, thus necessitating other management strategies to control these species.

Colorado River Basin↗

USGS2014

Importance of understanding landscape biases in USGS gage locations: Implications and solutions for managers

Flow and water temperature are fundamental properties of stream ecosystems upon which many freshwater resource management decisions are based. U.S. Geological Survey (USGS) gages are the most important source of streamflow and water temperature data available nationwide, but the degree to which gages represent landscape attributes of the larger population of streams has not been thoroughly evaluated. We identified substantial biases for seven landscape attributes in one or more regions across the conterminous United States. Streams with small watersheds (<10 km 2 ) and at high elevations were often underrepresented, and biases were greater for water temperature gages and in arid regions. Biases can fundamentally alter management decisions and at a minimum this potential for error must be acknowledged accurately and transparently. We highlight three strategies that seek to reduce bias or limit errors arising from bias and illustrate how one strategy, supplementing USGS data, can greatly reduce bias.

Fisheries↗

USGS2011

Development and assessment of a landscape-scale ecological threat index for the Lower Colorado River Basin

Anthropogenic disturbances impact freshwater biota but are rarely incorporated into conservation planning due to the difficulties in quantifying threats. There is currently no widely accepted method to quantify disturbances, and determining how to measure threats to upstream catchments using disturbance metrics can be time consuming and subjective. We compared four watershed-scale ecological threat indices for the Lower Colorado River Basin (LCRB) using landscape-level threats of land use (e.g., agricultural and urban lands), waterway development and diversions (e.g., number of canals, dams), and human development (e.g., road and railroads density, pollution sites). The LCRB is an ideal region to assess ecological threat indices because of the increasing need for conservation to ensure the persistence of native fishes in highly altered habitat. Each threat was measured for severity (i.e., level of influence on the upstream watershed) and frequency throughout each watershed; both severity and frequency were measured using two different methods. Severity values were based either on peer-reviewed literature and weighted in accordance to their published ecological impact, or assumed equal severity across stressors. Threat frequency was calculated according to either the presence/absence of each stressor, or on the relative density of each stressor in the watershed. Each measure of severity was combined with a measure of frequency, creating four ecological threat indices, and transformed to a 0–100 scale. Threat indices were highly correlated (slopes of 0.94–1.63; R 2 of 0.82–0.98), and were highest for watersheds close to urban centers, including Phoenix, Tucson, and Flagstaff, Arizona, and Las Vegas, Nevada. Road crossings and density appeared to be the most influential stressors in the index, but the removal of any individual stressor only changed the index by <5.1 units. Our results indicate that a simpler index with less subjectivity (i.e., presence/absence of a stressor in a watershed) provides similar results to the more subjective measure of threats (i.e., peer-reviewed threat severity). Because these threats have been linked to ecological health, the development of the index should be a useful tool to identify regions of greatest potential threat to aquatic biota and can aid in conservation planning for the Lower Colorado River Basin.

Ecological Indicators↗

USGS2011

Scale-dependent factors affecting North American river otter distribution in the midwest

The North American river otter ( Lontra canadensis ) is recovering from near extirpation throughout much of its range. Although reintroductions, trapping regulations and habitat improvements have led to the reestablishment of river otters in the Midwest, little is known about how their distribution is influenced by local- and landscape-scale habitat. We conducted river otter sign surveys from Jan. to Apr. in 2008 and 2009 in eastern Kansas to assess how local- and landscape-scale habitat factors affect river otter occupancy. We surveyed three to nine 400-m stretches of stream and reservoir shorelines for 110 sites and measured local-scale variables ( e.g., stream order, land cover types) within a 100 m buffer of the survey site and landscape-scale variables ( e.g., road density, land cover types) for Hydrological Unit Code 14 watersheds. We then used occupancy models that account for the probability of detection to estimate occupancy as a function of these covariates using Program PRESENCE. The best-fitting model indicated river otter occupancy increased with the proportion of woodland cover and decreased with the proportion of cropland and grassland cover at the local scale. Occupancy also increased with decreased shoreline diversity, waterbody density and stream density at the landscape scale. Occupancy was not affected by land cover or human disturbance at the landscape scale. Understanding the factors and scale important to river otter occurrence will be useful in identifying areas for management and continued restoration.

Kansas↗

USGS2011

Defining conservation priorities for freshwater fishes according to taxonomic, functional, and phylogenetic diversity

To date, the predominant use of systematic conservation planning has been to evaluate and conserve areas of high terrestrial biodiversity. Although studies in freshwater ecosystems have received recent attention, research has rarely considered the potential trade-offs between protecting different dimensions of biodiversity and the ecological processes that maintain diversity. We provide the first systematic prioritization for freshwaters (focusing on the highly threatened and globally distinct fish fauna of the Lower Colorado River Basin, USA) simultaneously considering scenarios of: taxonomic, functional, and phylogenetic diversity; contemporary threats to biodiversity (including interactions with nonnative species); and future climate change and human population growth. There was 75% congruence between areas of highest conservation priority for different aspects of biodiversity, suggesting that conservation efforts can concurrently achieve strong complementarity among all types of diversity. However, sizable fractions of the landscape were incongruent across conservation priorities for different diversity scenarios, underscoring the importance of considering multiple dimensions of biodiversity and highlighting catchments that contribute disproportionately to taxonomic, functional, and phylogenetic diversity in the region. Regions of projected human population growth were not concordant with conservation priorities; however, higher human population abundance will likely have indirect effects on native biodiversity by increasing demand for water. This will come in direct conflict with projected reductions in precipitation and warmer temperatures, which have substantial overlap with regions of high contemporary diversity. Native and endemic fishes in arid ecosystems are critically endangered by both current and future threats, but our results highlight the use of systematic conservation planning for the optimal allocation of limited resources that incorporates multiple and complementary conservation values describing taxonomic, functional, and phylogenetic diversity.

Ecological Applications↗

USGS2010

Environmental drivers of fish functional diversity and composition in the Lower Colorado River Basin

Freshwater conservation efforts require an understanding of how natural and anthropogenic factors shape the present-day biogeography of native and non-native species. This knowledge need is especially acute for imperiled native fishes in the highly modified Lower Colorado River Basin (LCRB), USA. In the present study we employed both a taxonomic and functional approach to explore how natural and human-related environmental drivers shape landscape-scale patterns of fish community composition in the LCRB. Our results showed that hydrologic alteration, watershed land use, and regional climate explained 30.3% and 44.7% of the total variation in fish community taxonomic and functional composition, respectively. Watersheds with greater dam densities and upstream storage capacity supported higher non-native functional diversity, suggesting that dams have provided additional "niche opportunities" for non-native equilibrium life-history strategists by introducing new reservoir habitat and modifying downstream flow and thermal regimes. By contrast, watersheds characterized by greater upstream land protection, lower dam densities, and higher variation in spring and summer precipitation supported fish communities with a strong complement of native species (opportunistic-periodic strategists). In conclusion, our study highlights the utility of a life-history approach to better understand the patterns and processes by which fish communities vary along environmental gradients.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2006

Genetic variation among subspecies of Least Tern (Sterna antillarum): Implications for conservation

DNA sequence variation from two nuclear introns and part of the mitochondrial cytochrome-b gene were used to Evaluate population structure among three subspecies of Least Term that nest in the United States (California [Sterna antillarum browni], Interior [S. a. athalassos], Eastern [S. a. antillarum]). Sequence variation was highest for nuclear intron XI (Gadp) within the glyceraldehyde-3-phosphate dehydrogenase gene. The second nuclear intron was fixed for the same allele in all subspecies. Fixation indices, FST and MST, for Gadp indicated genetic divergence between California and Interior subspecies. Estimates of nuclear gene flow were <4 individuals/generation, except between the Interior and Eastern subspecies (4 individuals/generation). Genetic indices for mitochondrial DNA did not differ among subspecies, and gene flows (reflecting female dispersal) ranged from 10 to 83 individuals/generation. Reservations are expressed about the validity of the current subspecific divisions and further research is required, including their taxonomic relationship to the Little Tern (Sterna albifrons).

Waterbirds↗