Geology topics

Jingyuan Wang

Publications and source records attributed to Jingyuan Wang.

14 recordsLinked to original sources

USGS2012

Exploring similarities among many species distributions

Collecting species presence data and then building models to predict species distribution has been long practiced in the field of ecology for the purpose of improving our understanding of species relationships with each other and with the environment. Due to limitations of computing power as well as limited means of using modeling software on HPC facilities, past species distribution studies have been unable to fully explore diverse data sets. We build a system that can, for the first time to our knowledge, leverage HPC to support effective exploration of species similarities in distribution as well as their dependencies on common environmental conditions. Our system can also compute and reveal uncertainties in the modeling results enabling domain experts to make informed judgments about the data. Our work was motivated by and centered around data collection efforts within the Great Smoky Mountains National Park that date back to the 1940s. Our findings present new research opportunities in ecology and produce actionable field-work items for biodiversity management personnel to include in their planning of daily management activities.

Conference Paper↗

USGS2011

Gas hydrate transect across northern Cascadia margin

Gas hydrate is a solid compound mainly comprised of methane and water that is stable under low temperature and high pressure conditions. Usually found in offshore environments with water depths exceeding about 500 meters and in arctic regions associated with permafrost, gas hydrates form an efficient storage system for natural gas. Hence, they may represent an important future energy resource [e.g., Kvenvolden , 1988]. Gas hydrates also form a natural geo‐hazard, and may play a significant role in global climate change [e.g., Dillon et al. , 2001].

Eos, Transactions, American Geophysical Union↗

USGS2010

Bleached chondrules: Evidence for widespread aqueous processes on the parent asteroids of ordinary chondrites

We present the first detailed study of a population of texturally distinct chondrules previously described by Kurat (1969), Christophe Michel-Lévy (1976), and Skinner et al. (1989) that are sharply depleted in alkalis and Al in their outer portions. These “bleached” chondrules, which are exclusively radial pyroxene and cryptocrystalline in texture, have porous outer zones where mesostasis has been lost. Bleached chondrules are present in all type 3 ordinary chondrites and are present in lower abundances in types 4–6. They are most abundant in the L and LL groups, apparently less common in H chondrites, and absent in enstatite chondrites. We used x-ray mapping and traditional electron microprobe techniques to characterize bleached chondrules in a cross section of ordinary chondrites. We studied bleached chondrules from Semarkona by ion microprobe for trace elements and H isotopes, and by transmission electron microscopy. Chondrule bleaching was the result of low-temperature alteration by aqueous fluids flowing through finegrained chondrite matrix prior to thermal metamorphism. During aqueous alteration, interstitial glass dissolved and was partially replaced by phyllosilicates, troilite was altered to pentlandite, but pyroxene was completely unaffected. Calcium-rich zones formed at the inner margins of the bleached zones, either as the result of the early stages of metamorphism or because of fluid-chondrule reaction. The mineralogy of bleached chondrules is extremely sensitive to thermal metamorphism in type 3 ordinary chondrites, and bleached zones provide a favorable location for the growth of metamorphic minerals in higher petrologic types. The ubiquitous presence of bleached chondrules in ordinary chondrites implies that they all experienced aqueous alteration early in their asteroidal histories, but there is no relationship between the degree of alteration and metamorphic grade. A correlation between the oxidation state of chondrite groups and their degree of aqueous alteration is consistent with the source of water being either accreted ices or water released during oxidation of organic matter. Ordinary chondrites were probably open systems after accretion, and aqueous fluids may have carried volatile elements with them during dehydration. Individual radial pyroxene and cryptocrystalline chondrules were certainly open systems in all chondrites that experienced aqueous alteration leading to bleaching.

Meteoritics and Planetary Science↗

USGS2010

The lack of potassium-isotopic fractionation in Bishunpur chondrules

In a search for evidence of evaporation during chondrule formation, the mesostases of 11 Bishunpur chondrules and melt inclusions in olivine phenocrysts in 7 of them have been analyzed for their alkali element abundances and K-isotopic compositions. Except for six points, all areas of the chondrules that were analyzed had δ 41 K compositions that were normal within error (typically ±3%, 2s̀). The six “anomalous” points are probably all artifacts. Experiments have shown that free evaporation of K leads to large 41 K enrichments in the evaporation residues, consistent with Rayleigh fractionation. Under Rayleigh conditions, a 3% enrichment in δ 41 K is produced by ∼12% loss of K. The range of L-chondrite-normalized K/Al ratios (a measure of the K-elemental fractionation) in the areas analyzed vary by almost three orders of magnitude. If all chondrules started out with L-chondrite-like K abundances and the K loss occurred via Rayleigh fractionation, the most K-depleted chondrules would have had compositions of up to δ 41 K ≅ 200%. Clearly, K fractionation did not occur by evaporation under Rayleigh conditions. Yet experiments and modeling indicate that K should have been lost during chondrule formation under currently accepted formation conditions (peak temperature, cooling rate, etc.). Invoking precursors with variable alkali abundances to produce the range of K/Al fractionation in chondrules does not explain the K-isotopic data because any K that was present should still have experienced sufficient loss during melting for there to have been a measurable isotopic fractionation. If K loss and isotopic fractionation was inevitable during chondrule formation, the absence of K-isotopic fractionation in Bishunpur chondrules requires that they exchanged K with an isotopically normal reservoir during or after formation. There is evidence for alkali exchange between chondrules and rim-matrix in all unequilibrated ordinary chondrites. However, melt inclusions can have alkali abundances that are much lower than the mesostases of the host chondrules, which suggests that they at least remained closed since formation. If it is correct that some or all melt inclusions remained closed since formation, the absence of K-isotopic fractionation in them requires that the K-isotopic exchange took place during chondrule formation, which would probably require gas-chondrule exchange. Potassium evaporated from fine-grained dust and chondrules during chondrule formation may have produced sufficient K-vapor pressure for gas-chondrule isotopic exchange to be complete on the timescales of chondrule formation. Alternatively, our understanding of chondrule formation conditions based on synthesis experiments needs some reevaluation.

Meteoritics and Planetary Science↗

USGS2010

Strong nonlinear photonic responses from microbiologically synthesized tellurium nanocomposites

A new class of nanomaterials, namely microbiologically-formed nanorods composed of elemental tellurium [Te(0)] that forms unusual nanocomposites when combined with poly(m-phenylenevinylene-co-2,5-dioctoxy-phenylenevinylene) (PmPV) is described. These bio-nanocomposites exhibit excellent broadband optical limiting at 532 and 1064 nm. Nonlinear scattering, originating from the laser induced solvent bubbles and microplasmas, is responsible for this nonlinear behavior. The use of bacterially-formed Te(0) when combined with an organic chemical host (e.g., PmPV) is a new green method of nanoparticle syntheses. This opens the possibilities of using unique, biologically synthesized materials to advance future nanoelectronic and nanophotonic applications.

Chemical Physics Letters↗

USGS2009

Developing collaborative classifiers using an expert-based model

This paper presents a hierarchical, multi-stage adaptive strategy for image classification. We iteratively apply various classification methods (e.g., decision trees, neural networks), identify regions of parametric and geographic space where accuracy is low, and in these regions, test and apply alternate methods repeating the process until the entire image is classified. Currently, classifiers are evaluated through human input using an expert-based system; therefore, this paper acts as the proof of concept for collaborative classifiers. Because we decompose the problem into smaller, more manageable sub-tasks, our classification exhibits increased flexibility compared to existing methods since classification methods are tailored to the idiosyncrasies of specific regions. A major benefit of our approach is its scalability and collaborative support since selected low-accuracy classifiers can be easily replaced with others without affecting classification accuracy in high accuracy areas. At each stage, we develop spatially explicit accuracy metrics that provide straightforward assessment of results by non-experts and point to areas that need algorithmic improvement or ancillary data. Our approach is demonstrated in the task of detecting impervious surface areas, an important indicator for human-induced alterations to the environment, using a 2001 Landsat scene from Las Vegas, Nevada.

Nevada↗

USGS2008

Mineralogical and compositional characteristics of Late Permian coals from an area of high lung cancer rate in Xuan Wei, Yunnan, China: Occurrence and origin of quartz and chamosite

Some townships in Xuan Wei County, Yunnan Province, have one of the highest lung cancer mortality rates in China and the epidemic disease in the area has generally been attributed to the polycyclic aromatic hydrocarbons (PAHs) released from domestic coal burning. However, the cancer-causing culprit is not settled as Tian [Tian, L., 2005. Coal Combustion Emissions and Lung Cancer in Xuan Wei, China. Ph.D. thesis, University of California, Berkeley.] found nanometer quartz in these coals, soot emissions, and lung cancer tissues. We have conducted mineralogical and geochemical studies of the coals from Xuan Wei for the purpose of shedding light on the minerals which may be related to the epidemic lung cancer. In this paper, abundances, modes of occurrence, and origins of minerals and elements in the coals from two mines in Xuan Wei have been studied using optical microscope, low-temperature ashing, X-ray diffraction analysis, scanning electron microscope equipped with energy-dispersive X-ray spectrometer, and inductively-coupled plasma mass spectrometry. The minerals in the coals are mainly composed of quartz, chamosite, kaolinite, and calcite. The particle size of quartz is rather small, mostly less than 20????m and it is of authigenic origin. Chamosite occurs mainly as cell-fillings. The occurrence of quartz and chamosite indicates that they were derived from the hydrothermal fluids. Epigenetic calcite is derived from calcic fluids. Kaolinite is derived mainly from sediment source region of Kangdian Oldland to the west of coal basin. The composition of Xuan Wei coal is high in SiO2, Fe2O3, TiO2, CaO, MnO, V, Co, Ni, Cu, and Zn. The high SiO2 content is attributed to quartz, and the Fe2O3 content to chamosite. The high Mn and low Mg contents in the coal indicate the inputs of hydrothermal fluids. CaO occurs mainly in epigenetic calcite. Elements Ti, Co, Ni, Cu, Zn, and rare earth elements were derived from the basaltic rocks at sediment source region. ?? 2008 Elsevier B.V. All rights reserved.

International Journal of Coal Geology↗

USGS2008

Distribution of toxic trace elements in soil/sediment in post-Katrina New Orleans and the Louisiana Delta

This study provided a comprehensive assessment of seven toxic trace elements (As, Pb, V, Cr, Cd, Cu, and Hg) in the soil/sediment of Katrina affected greater New Orleans region 1 month after the recession of flood water. Results indicated significant contamination of As and V and non-significant contamination of Cd, Cr, Cu, Hg and Pb at most sampling sites. Compared to the reported EPA Region 6 soil background inorganic levels, except As, the concentrations of other six elements had greatly increased throughout the studied area; St. Bernard Parish and Plaquemines Parish showed greater contamination than other regions. Comparison between pre- and post-Katrina data in similar areas, and data for surface, shallow, and deep samples indicated that the trace element distribution in post-Katrina New Orleans was not obviously attributed to the flooding. This study suggests that more detailed study of As and V contamination at identified locations is needed. ?? 2008 Elsevier Ltd.

Environmental Pollution↗

USGS2007

Chemical quality of depositional sediments and associated soils in New Orleans and the Louisiana peninsula following Hurricane Katrina

Hurricane Katrina made landfall on the Louisiana peninsula south of New Orleans on Aug 29, 2005. The resulting storm surge caused numerous levy breaches in the parishes of New Orleans as well as on the Louisiana peninsula. This study was conducted to determine the concentrations of inorganic and organic constituents in sediments and associated soils in New Orleans parishes and the Louisiana peninsula after the floodwaters had been removed and/or receded following Hurricane Katrina. A total of 46 sediment and soil samples were analyzed that were collected throughout New Orleans and the Louisiana peninsula. Approximately 20% of the sediment samples were analyzed, including shallow sediment samples from locations that included the top and beneath automobiles, in residential and commercial areas, and near refineries. Gasoline constituents, pesticides, and leachable heavy metals were analyzed using headspace gas chromatography/mass spectrometry (GC/MS), organic extraction GC/MS, and inductively coupled plasma/mass spectrometry, respectively. A significant number of samples had leachable As and Pb concentrations in excess of drinking water standards. The remaining metals analyzed (i.e., Cd, Cr, Cu, Hg, and V) generally had much lower leachable levels. Of the gasoline constituents, only benzene was observed above the limit of detection (of 5 ??g/kg), with no samples observed as being above the method detection limits of 10 ??g/kg. For the 18 pesticides analyzed, most were in the nondetectable range and all were in trace amounts that were orders of magnitude below regulatory guidelines. ?? 2007 American Chemical Society.

Environmental Science & Technology↗

USGS2005

Tidal and seasonal effects on transport of pink shrimp postlarvae

Transport simulations were conducted to investigate a large seasonal peak in postlarvae of the pink shrimp Farfantepenaeus duorarum that occurs every summer on the northwestern border of Florida Bay. Daily vertical migration, a known behavior in pink shrimp postlarvae, was assumed in all scenarios investigated. A Lagrangian trajectory model was developed using a current field derived from a 3 yr ADCP (Acoustic Doppler Current Profiler) time series. To fit the estimated planktonic development time of pink shrimp, the model simulated larvae traveling at night over a 30 d period. We investigated 2 types of effects: (1) the effect of mismatch periodicity between tidal constituents and daily migration, and (2) the effect of seasonal changes in night length. The maximum eastward displacement with the semidiurnal lunar tidal constituent (M2) was 4 km, with periods of enhanced transport in both summer and winter. In contrast, eastward displacement with the semidiurnal solar tidal constituent (S2) and the lunisolar diurnal K1 was 65 km and the period of maximum distance occurred in summer every year. Because the periods of S2 and K1 are so close to the 24 h vertical migration period, and the eastward current (flood) of these constituents matches the diel cycle over extended intervals, they can induce strong horizontal transport during summer. Thus, diel vertical migration can interact with the S2 and the K1 tidal constituents and with the annual cycle of night length to produce a distinct annual cycle that may enhance transport of pink shrimp and other coastal species during summer in shallow areas of the Gulf of Mexico. ?? Inter-Research 2005.

Marine Ecology Progress Series↗

USGS2004

The freshwater transport and dynamics of the western Maine coastal current

Observations in the Gulf of Maine, USA, were used to characterize the freshwater transport, temporal variability and dynamics of the western Maine coastal current. These observations included moored measurements, multiple hydrographic surveys, and drifter releases during April–July of 1993 and 1994. There is a strong seasonal signal in salinity and along-shore velocity of the coastal current, caused by the freshwater inputs of the rivers entering the western Gulf. Surface salinity within the coastal current during the spring freshet is typically 2 psu below ambient, and along-shore currents in the surface layer are directed southwestward at speeds of 0.10–0.20 m s −1 , occasionally reaching 0.50 m s −1 . The plume thickness is typically 10–20 m in water depths of 50–100 m, thus it is well isolated from the bottom over most of its areal extent. The along-coast freshwater transport within the plume varies considerably due to variations in wind stress, but on time scales of weeks to months it follows the variations of riverine input, with a time lag consistent with the advective velocity. Less than half of the transport of the coastal current is explained by the baroclinic gradient; the barotropic forcing associated with the larger-scale dynamics of the Gulf of Maine accounts for about 60% of the transport. The volume of freshwater transport in the coastal current exceeds the local riverine input of fresh water by 30%, suggesting a significant contribution of freshwater transport from the St. John River, 500 km northeastward. The measurements within the western Maine coastal current, however, indicate a significant decrease in the baroclinic transport of fresh water along the coast, with an e-folding scale of approximately 200 km.

Gulf of Maine↗

USGS2003

Diagnostic and molecular evaluation of three iridovirus-associated salamander mortality events

In 1998 viruses were isolated from tiger salamander larvae (Ambystoma tigrinum diaboli and A. tigrinum melanostictum) involved in North Dakota and Utah (USA) mortality events and spotted salamander (A. maculatum) larvae in a third event in Maine (USA). Although sympatric caudates and anurans were present at all three sites only ambystomid larvae appeared to be affected. Mortality at the North Dakota site was in the thousands while at the Utah and Maine sites mortality was in the hundreds. Sick larvae were lethargic and slow moving. They swam in circles with obvious buoyancy problems and were unable to remain upright. On the ventral surface, near the gills and hind limbs, red spots or swollen areas were noted. Necropsy findings included: hemorrhages and ulceration of the skin, subcutaneous and intramuscular edema, swollen and pale livers with multifocal hemorrhage, and distended fluid-filled intestines with areas of hemorrhage. Light microscopy revealed intracytoplasmic inclusions, suggestive of a viral infection, in a variety of organs. Electron microscopy of ultra thin sections of the same tissues revealed iridovirus-like particles within the inclusions. These viruses were isolated from a variety of organs, indicating a systemic infection. Representative viral isolates from the three mortality events were characterized using molecular assays. Characterization confirmed that the viral isolates were iridoviruses and that the two tiger salamander isolates were similar and could be distinguished from the spotted salamander isolate. The spotted salamander isolate was similar to frog virus 3, the type species of the genus Ranavirus, while the tiger salamander isolates were not. These data indicate that different species of salamanders can become infected and die in association with different iridoviruses. Challenge assays are required to determine the fish and amphibian host range of these isolates and to assess the susceptibility of tiger and spotted salamanders to heterologous virus isolates.

Maine, North Dakota, Utah↗

USGS1997

Seasonal Sea-Level Variations in San Francisco Bay in Response to Atmospheric Forcing, 1980

The seasonal response of sea level in San Francisco Bay (SFB) to atmospheric forcing during 1980 is investigated. The relations between sea-level data from the Northern Reach, Central Bay and South Bay, and forcing by local wind stresses, sea level pressure (SLP), runoff and the large scale sea level pressure field are examined in detail. The analyses show that the sea-level elevations and slopes respond to the along-shore wind stress T(V) at most times of the year, and to the cross-shore wind stress T(N) during two transition periods in spring and autumn. River runoff raises the sea-level elevation during winter. It is shown that winter precipitation in the SFB area is mainly attributed to the atmospheric circulation associated with the Alcutian Low, which transports the warm, moist air into the Bay area. A multiple linear regression model is employed to estimate the independent contributions of barometric pressure and wind stress to adjusted sea level. These calculations have a simple dynamical interpretation which confirms the importance of along-shore wind to both sea level and north-south slope within the Bay.

Estuarine, Coastal and Shelf Science↗

USGS1994

A precise 232Th-208Pb chronology of fine-grained monazite: Age of the Bayan Obo REE-Fe-Nb ore deposit, China

We have obtained precise Th-Pb internal isochron ages on monazite and bastnaesite for the world's largest known rare earth elements (REE)-Fe-Nb ore deposit, the Bayan Obo of Inner Mongolia, China. The monazite samples, collected from the carbonate-hosted ore zone, contain extremely small amounts of uranium (less than 10 ppm) but up to 0.7% ThO 2 . Previous estimates of the age of mineralization ranged from 1.8 to 0.255 Ga. Magnetic fractions of monazite and bastnaesite samples (<60-μm size) showed large ranges in 232 Th 204 Pb "> 232 Th 204 Pb values (900–400,000) and provided precise Th-Pb internal isochron ages for paragenetic monazite mineralization ranging from 555 to 398 Ma within a few percent error (0.8% for two samples). These results are the first indication that REE mineralization within the giant Bayan Obo ore deposit occurred over a long period of time. The initial lead isotopic compositions (low 206 Pb 204 Pb "> 206 Pb 204 Pb and high 208 Pb 204 Pb) "> 208 Pb 204 Pb) and large negative ϵ Nd values for Bayan Obo ore minerals indicate that the main source(s) for the ores was the lower crust which was depleted in uranium, but enriched in thorium and light rare earth elements for a long period of time. Zircon from a quartz monzonite, located 50 km south of the ore complex and thought to be related to Caledonian subduction, gave an age of 451 Ma, within the range of monazite ages. Textural relations together with the mineral ages favor an epigenetic rather than a syngenetic origin for the orebodies. REE mineralization started around 555 Ma (disseminated monazite in the West, the Main, and south of the East Orebody), but the main mineralization (banded ores) was related to the Caledonian subduction event ca. 474-400 Ma.

Bayan Obo, Kuanggou Fault↗