Geology topics
James L. Carter
Publications and source records attributed to James L. Carter.
Mercury accumulation by lower trophic-level organisms in lentic systems within the Guadalupe River watershed, California
The water columns of four reservoirs (Almaden, Calero, Guadalupe and Lexington Reservoirs) and an abandoned quarry pit filled by Alamitos Creek drainage for recreational purposes (Lake Almaden) were sampled on September 14 and 15, 2004 to provide the first measurements of mercury accumulation by phytoplankton and zooplankton in lentic systems (bodies of standing water, as in lakes and reservoirs) within the Guadalupe River watershed, California. Because of widespread interest in ecosystem effects associated with historic mercury mining within and downgradient of the Guadalupe Riverwatershed, transfer of mercury to lower trophic-level organisms was examined. The propensity of mercury to bioaccumulate, particularly in phytoplankton and zooplankton at the base of the food web, motivated this attempt to provide information in support of developing trophic-transfer and solute-transport models for the watershed, and hence in support of subsequent evaluation of load-allocation strategies. Both total mercury and methylmercury were examined in these organisms. During a single sampling event, replicate samples from the reservoir water column were collected and processed for dissolved-total mercury, dissolved-methylmercury, phytoplankton mercury speciation, phytoplankton taxonomy and biomass, zooplankton mercury speciation, and zooplankton taxonomy and biomass. The timing of this sampling event was coordinated with sampling and analysis of fish from these five water bodies, during a period of the year when vertical stratification in the reservoirs generates a primary source of methylmercury to the watershed. Ancillary data, including dissolved organic carbon and trace-metal concentrations as well as vertical profiles of temperature, dissolved oxygen, specific conductance and pH, were gathered to provide a water-quality framework from which to compare the results for mercury. This work, in support of the Guadalupe River Mercury Total Maximum Daily Load (TMDL) Study, provides the first measurements of mercury trophic transfer through planktonic communities in this watershed. It is worth reemphasizing that this data set represents a single ?snap shot? of conditions in water bodies within the Guadalupe River watershed to: (1) fill gaps in trophic transfer information, and (2) provide a scientific basis for future process-based studies with enhanced temporal and spatial coverage. This electronic document was unconventionally formatted to enhance the accessibility of information to a wide range of interest groups.
Sediment-water interactions affecting dissolved-mercury distributions in Camp Far West Reservoir, California
Field and laboratory studies were conducted in April and November 2002 to provide the first direct measurements of the benthic flux of dissolved (0.2-micrometer filtered) mercury species (total and methylated forms) between the bottom sediment and water column at three sampling locations within Camp Far West Reservoir, California: one near the Bear River inlet to the reservoir, a second at a mid-reservoir site of comparable depth to the inlet site, and the third at the deepest position in the reservoir near the dam (herein referred to as the inlet, midreservoir and near-dam sites, respectively; Background, Fig. 1). Because of interest in the effects of historic hydraulic mining and ore processing in the Sierra Nevada foothills just upstream of the reservoir, dissolved-mercury species and predominant ligands that often control the mercury speciation (represented by dissolved organic carbon, and sulfides) were the solutes of primary interest. Benthic flux, sometimes referred to as internal recycling, represents the transport of dissolved chemical species between the water column and the underlying sediment. Because of the affinity of mercury to adsorb onto particle surfaces and to form insoluble precipitates (particularly with sulfides), the mass transport of mercury in mining-affected watersheds is typically particle dominated. As these enriched particles accumulate at depositional sites such as reservoirs, benthic processes facilitate the repartitioning, transformation, and transport of mercury in dissolved, biologically reactive forms (dissolved methylmercury being the most bioavailable for trophic transfer). These are the forms of mercury examined in this study.
Flux of dissolved forms of mercury across the sediment-water interface in Lahontan Reservoir, Nevada
Field and laboratory studies were conducted between April 30, 2001 and July 19, 2001 to provide the first direct measurements of the benthic flux of dissolved (0.2-micrometer filtered) mercury species (total and methylated forms) between the bottom sediment and water column at three sites: two in the southern lobe and one in the northern lobe of Lahontan Reservoir, Nevada (Background, Fig. 1). Dissolved-mercury species and predominant ligands (represented by dissolved organic carbon, and sulfides) were the solutes of primary interest. Benthic flux, sometimes referred to as internal recycling, represents the transport of dissolved chemical species between the water column and the underlying sediment. Water-quality managers often assess and prioritize remediation strategies for aquatic systems, in particular Super Fund sites that have been adversely affected by anthropogenic activities. In the case of the Lahontan Reservoir along the Carson River, mercury associated with historic gold and silver extraction has been fluvially transported and accumulated in the bottom sediments. Frequent demands have been made by Super Fund site managers and the general public to quantify the connections between fluxes of contaminants and the health, abundance, and distribution of biological resources (Kuwabara and others, 1999). As part of a comprehensive examination of transport processes affecting mercury dynamics in Lahontan Reservoir, this study focuses on a poorly understood, yet potentially predominant, source of mercury to the reservoir water column, which is internal recycling, or benthic flux of mercury species and associated ligands. Mobilization, flux, and biological availability of mercury into the water column of the reservoir are affected by physical (e.g., advection and diffusion), chemical (i.e., oxidationreduction reactions, complexation and repartitioning) and biological processes (Flegal and others, 1991; Kuwabara and others, 1996; Grenz and others, 2000, Topping and others, 2001). The results described herein followed from the integration of current project studies with information needs identified by the U.S. Environmental Protection Agency, Region 9 (USEPA) to provide initial determinations of dissolved total and methyl-mercury fluxes from the sediments into the water column of Lahontan Reservoir. Recent mercury distribution and transformation studies in the Carson River system by Marvin-Dipasquale and others (2001) indicated the potential importance of sediment-water interactions in describing mercury speciation, its sources and sinks. Quantifying and understanding the magnitude and variability of these interactions are critical to the accurate assessment of contaminant sources and loads as well as to the development of process-integrated water-quality models for this mining-affected system. With a variety of strategies under consideration to determine how to most efficiently improve the water quality in the Carson River system, the primary question posed in this study was, “What processes regulate the fate and transport of mercury species in Lahontan Reservoir? In particular, are sources and sinks of dissolved total and methyl mercury associated with the bottom sediment within Lahontan Reservoir significant relative to major surface-water inputs from the Carson River?” The question was motivated by a number of factors. First, extraction of precious metals up gradient of the reservoir provide a historic source of elemental mercury that continues to be fluvially transported in dissolved and particulate phases (Hoffman and Taylor, 1998; Carroll and others, 2000; Carroll and Warwick, 2001). Elevated total and methyl mercury concentrations into the reservoir have been well documented (Priessler and others, 1999; Jones and others, 1999; Allander and others, 2001, Marvin-Dipasquale and others, 2001). Therefore, determining whether some fraction of this sediment-associated mercury can remobilize for transport to the overlying water and subsequently to down-stream portions of the Carson River is necessary. Second, elevated concentrations of mercury species in reservoir water, sediment, and fish have prompted a compilation, and comparison of dominant contaminant sources so that appropriate remedial strategies can be designed and implemented. Third, changes in oxidizing or reducing (redox) conditions and nutrient availability near the sediment-water interface (e.g., during phytoplankton blooms) can dramatically alter the mobility of metals and ligands associated with the bottom sediment as episodic sources of carbon settle out and accumulate (Thompson and others, 1981). Finally, there is a growing body of evidence from other aquatic systems that benthic flux or internal recycling of contaminants and nutrients is an important process to consider in developing appropriate ecosystem water-quality models (Wood and others, 1995; Kuwabara and others, 2000). The need for more refined numerical and conceptual models for mercury dynamics within the Carson River system thus clearly exists. This report is formatted unconventionally in a pyramid-like structure to effectively serve the needs of diverse parties interested in reviewing or acquiring information at various levels of detail (Appendix 1). The report enables quick transitions between the initial summary information (figuratively at the top of the pyramid) and later details of methods or results (that is, figuratively towards the base) using hyperlinks to supporting figures and tables, and an electronically linked Table of Contents.
After site selection and before data analysis: sampling, sorting, and laboratory procedures used in stream benthic macroinvertebrate monitoring programs by USA state agencies
A survey of methods used by US state agencies for collecting and processing benthic macroinvertebrate samples from streams was conducted by questionnaire; 90 responses were received and used to describe trends in methods. The responses represented an estimated 13,000-15,000 samples collected and processed per year. Kicknet devices were used in 64.5% of the methods; other sampling devices included fixed-area samplers (Surber and Hess), artificial substrates (Hester-Dendy and rock baskets), grabs, and dipnets. Regional differences existed, e.g., the 1-m kicknet was used more often in the eastern US than in the western US. Mesh sizes varied among programs but 80.2% of the methods used a mesh size between 500 and 600 (mu or u)m. Mesh size variations within US Environmental Protection Agency regions were large, with size differences ranging from 100 to 700 (mu or u)m. Most samples collected were composites; the mean area sampled was 1.7 m 2 . Samples rarely were collected using a random method (4.7%); most samples (70.6%) were collected using "expert opinion", which may make data obtained operator-specific. Only 26.3% of the methods sorted all the organisms from a sample; the remainder subsampled in the laboratory. The most common method of subsampling was to remove 100 organisms (range = 100-550). The magnification used for sorting ranged from 1 (sorting by eye) to 30x, which results in inconsistent separation of macroinvertebrates from detritus. In addition to subsampling, 53% of the methods sorted large/rare organisms from a sample. The taxonomic level used for identifying organisms varied among taxa; Ephemeroptera, Plecoptera, and Trichoptera were generally identified to a finer taxonomic resolution (genus and species) than other taxa. Because there currently exists a large range of field and laboratory methods used by state programs, calibration among all programs to increase data comparability would be exceptionally challenging. However, because many techniques are shared among methods, limited testing could be designed to evaluate whether procedural differences affect the ability to determine levels of environmental impairment using benthic macroinvertebrate communities.
Metal exposure in a benthic macroinvertebrate, Hydropsyche californica, related to mine drainage in the Sacramento River
A biomonitoring technique was employed to complement studies of metal transport in the upper Sacramento River affected by acid mine drainage. Metals (Al, Cd, Cu, Fe, Hg, Pb, and Zn) were determined in a resident invertebrate, Hydropsyche californica (Insecta: Trichoptera), and streambed sediments (<62 µm) to assess metal contamination within a 111-km section of the river downstream of the mining area. Metals in H. californica also were interpreted to be broadly indicative of metal exposure in fish. Total Hg was determined in the whole body of the insect, whereas Al, Cd, Cu, Fe, Pb, and Zn were additionally separated into operationally defined cytosolic (used as an indicator of exposure to bioavailable metal) and particulate fractions. Total concentrations of Cd, Cu, Hg, Pb, and Zn in sediments were consistent with documented upstream sources of acid mine drainage. Metal distribution patterns in H. californica and sediments were generally consistent for Cd, Cu, and Pb but inconsistent for Hg and Zn. Concentrations in H. californica indicated that bioavailable Cd, Cu, Pb, and Zn was transported at least 120 km downstream of the mine sources. Zinc in H. californica was elevated, but unlike sediments, did not decrease downstream. Mercury in H. californica was not elevated.
Methods of analysis by the U.S. Geological Survey National Water Quality Laboratory-Processing, taxonomy, and quality control of benthic macroinvertebrate samples
Qualitative and quantitative methods to process benthic macroinvertebrate (BMI) samples have been developed and tested by the U.S. Geological Survey?s National Water Quality Laboratory Biological Group. The qualitative processing method is based on visually sorting a sample for up to 2 hours. Sorting focuses on attaining organisms that are likely to result in taxonomic identifications to lower taxonomic levels (for example, Genus or Species). Immature and damaged organisms are also sorted when they are likely to result in unique determinations. The sorted sample remnant is scanned briefly by a second person to determine if obvious taxa were missed. The quantitative processing method is based on a fixed-count approach that targets some minimum count, such as 100 or 300 organisms. Organisms are sorted from randomly selected 5.1- by 5.1-centimeter parts of a gridded subsampling frame. The sorted remnant from each sample is resorted by a second individual for at least 10 percent of the original sort time. A large-rare organism search is performed on the unsorted remnant to sort BMI taxa that were not likely represented in the sorted grids. After either qualitatively or quantitatively sorting the sample, BMIs are identified by using one of three different types of taxonomic assessment. The Standard Taxonomic Assessment is comparable to the U.S. Environmental Protection Agency Rapid Bioassessment Protocol III and typically provides Genus- or Species-level taxonomic resolution. The Rapid Taxonomic Assessment is comparable to the U.S. Environmental Protection Agency Rapid Bioassessment Protocol II and provides Familylevel and higher taxonomic resolution. The Custom Taxonomic Assessment provides Species-level resolution whenever possible for groups identified to higher taxonomic levels by using the Standard Taxonomic Assessment. The consistent use of standardized designations and notes facilitates the interpretation of BMI data within and among water-quality studies. Taxonomic identifications are quality assured by verifying all referenced taxa and randomly reviewing 10 percent of the taxonomic identifications performed weekly by Biological Group taxonomists. Taxonomic errors discovered during this review are corrected. BMI data are reviewed for accuracy and completeness prior to release. BMI data are released phylogenetically in spreadsheet format and unprocessed abundances are corrected for laboratory and field subsampling when necessary.
The distribution and abundance of lotic macroinvertebrates during Spring 1997 in seven streams of the western Santa Clara Valley area, California
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The interannual distribution and abundance of lotic invertebrates from five habitats of the Merced River in Yosemite Valley, Yosemite National Park, 1992-1995
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The relationship of habitat characteristics to the distribution of chironomidae (Diptera) as measured by pupal exuviae collections in a large river system
Floating chironomid pupal exuviae were collected throughout the Yakima River (Washington, USA) and tributaries in 1989 and 1990. All samples were taken during the October-November low-flow season and most sites were visited once with a sampling effort of approximately 10 minutes. Sampled stream segments ranged from 3rd to 7th order and elevation ranged from 140–1200 m. The total number of taxa distinguished in 77 samples was 150 with a mean of 24 per site. Species richness was not highly correlated with stream order or elevation. An ecological gradient defined by ordinating the taxa by site data was highly correlated with site elevation (r=.93). Comparison with published attributes of chironomid genera suggested that temperature regime was a dominant environmental variable controlling chironomid distribution in this basin. However, since most measured habitat variables were associated with altitude, their effects could not be separated. Cluster analysis of taxa by site data resulted in groupings that distinguished montane from valley sites and agricultural drains from other valley sites. Differences in species composition between moderately enriched agricultural drains and less-impacted sites were minor compared with the underlying elevation gradient.
Understanding the toxicity of contaminants in sediments: beyond the bioassay-based paradigm
No abstract available.
Use of detrended correspondence analysis to evaluate factors controlling spatial distribution of benthic insects
Detrended correspondence analysis (DCA) was evaluated for its effectiveness in displaying factors controlling the spatial distribution of benthic insects in an oligotrophic stream where an experimental gradient (copper) that selectively affects population abundances was imposed. DCA proved to be highly sensitive to differences among samples and consistently provided ecologically meaningful species ordinations. Seasonality of taxa was the major gradient displayed by DCA prior to copper exposure when data for all sampling dates were included. Sensitivity of taxa to copper was a more important factor affecting community structure than was seasonality during periods of continuous exposure to copper (2.5 to 15 µg l -1 Cu T ; approximately 12 to 75 ng l -1 Cu 2+ . When pre-dose data for each sampling date were ordinated independently, substratum composition and biological interactions were the major gradients displayed in species ordinations. During periods of exposure, sensitivity of taxa to copper was the primary gradient. This gradient also reflected a generally greater sensitivity to copper of herbivorous than of detritivorous or predatory benthic insects. DCA revealed the persistence, eleven months after dosing ceased, of differences in community structure between the control and high treatment (5 and 10 µg l -1 Cu T ) sections. Differences between sections were not evident on this sampling date from total biomass or total density (numerical) estimates.
Use of detrended correspondence analysis in evaluating factors controlling species composition of periphyton
Detrended correspondence analysis (DCA) was evaluated for its usefulness in elucidating relationships among samples and among species of periphyton in an oligotrophic stream, and for its effectiveness in displaying major gradients where an experimental gradient (copper) affecting species composition was imposed. It was highly sensitive to differences among samples and consistently provided ecologically meaningful species ordinations. Gradients related to seasonality of taxa and year-to-year differences in population densities were evident in DCA ordinations if data for all sampling dates were included, and these gradients complicated interpretation of the copper gradient. Stage of succession was a secondary gradient during exposure and complicated interpretation of the copper gradient after a major disturbance event (flooding).